MS001158 (gene) Bitter gourd (TR) v1

Overview
NameMS001158
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionInterferon-related developmental regulator, Armadillo-type fold protein
Locationscaffold36: 1889548 .. 1889643 (+)
RNA-Seq ExpressionMS001158
SyntenyMS001158
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAACTAGCTAATCAGACGCGAGCCCCTCCTCAGGCGGATTCCTCCTTTTGCTCCTCAGCGTACGGGGTATTAGCAGCCGTTTCCAGTTGTTGTTCT

mRNA sequence

CAACTAGCTAATCAGACGCGAGCCCCTCCTCAGGCGGATTCCTCCTTTTGCTCCTCAGCGTACGGGGTATTAGCAGCCGTTTCCAGTTGTTGTTCT

Coding sequence (CDS)

CAACTAGCTAATCAGACGCGAGCCCCTCCTCAGGCGGATTCCTCCTTTTGCTCCTCAGCGTACGGGGTATTAGCAGCCGTTTCCAGTTGTTGTTCT

Protein sequence

QLANQTRAPPQADSSFCSSAYGVLAAVSSCCS
Homology
[Close]
BLAST of MS001158 vs. NCBI nr
Match: KAG4909459.1 (hypothetical protein JHK87_055575 [Glycine soja])

HSP 1 Score: 61.6 bits (148), Expect = 1.4e-06
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 1   QLANQTRAPPQADSSFCSSAYGVLAAVSSCCS 33
           QLANQTRAPP+ADSSFCSSAYGVLAAVSSCCS
Sbjct: 157 QLANQTRAPPRADSSFCSSAYGVLAAVSSCCS 188

[Close]
BLAST of MS001158 vs. NCBI nr
Match: CDY45547.1 (BnaCnng13060D [Brassica napus])

HSP 1 Score: 61.6 bits (148), Expect = 1.4e-06
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 1   QLANQTRAPPQADSSFCSSAYGVLAAVSSCCS 33
           QLANQTRAPP+ADSSFCSSAYGVLAAVSSCCS
Sbjct: 179 QLANQTRAPPRADSSFCSSAYGVLAAVSSCCS 210

[Close]
BLAST of MS001158 vs. NCBI nr
Match: GEV46790.1 (carotenoid cleavage dioxygenase 1 [Tanacetum cinerariifolium])

HSP 1 Score: 61.6 bits (148), Expect = 1.4e-06
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 1   QLANQTRAPPQADSSFCSSAYGVLAAVSSCCS 33
           QLANQTRAPP+ADSSFCSSAYGVLAAVSSCCS
Sbjct: 221 QLANQTRAPPRADSSFCSSAYGVLAAVSSCCS 252

[Close]
BLAST of MS001158 vs. NCBI nr
Match: CDY63600.1 (BnaUnng00870D [Brassica napus])

HSP 1 Score: 61.6 bits (148), Expect = 1.4e-06
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 1   QLANQTRAPPQADSSFCSSAYGVLAAVSSCCS 33
           QLANQTRAPP+ADSSFCSSAYGVLAAVSSCCS
Sbjct: 179 QLANQTRAPPRADSSFCSSAYGVLAAVSSCCS 210

[Close]
BLAST of MS001158 vs. NCBI nr
Match: RYR67198.1 (hypothetical protein Ahy_A03g013506 isoform B [Arachis hypogaea])

HSP 1 Score: 61.6 bits (148), Expect = 1.4e-06
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 1  QLANQTRAPPQADSSFCSSAYGVLAAVSSCCS 33
          QLANQTRAPP+ADSSFCSSAYGVLAAVSSCCS
Sbjct: 63 QLANQTRAPPRADSSFCSSAYGVLAAVSSCCS 94

[Close]
BLAST of MS001158 vs. ExPASy TrEMBL
Match: A0A2N9I7M3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS48006 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-07
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 1   QLANQTRAPPQADSSFCSSAYGVLAAVSSCCS 33
           QLANQTRAPPQADSSFCSSAYGVLAAVSSCCS
Sbjct: 155 QLANQTRAPPQADSSFCSSAYGVLAAVSSCCS 186

[Close]
BLAST of MS001158 vs. ExPASy TrEMBL
Match: A0A2N9FRF2 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17704 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-07
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 1    QLANQTRAPPQADSSFCSSAYGVLAAVSSCCS 33
            QLANQTRAPPQADSSFCSSAYGVLAAVSSCCS
Sbjct: 1033 QLANQTRAPPQADSSFCSSAYGVLAAVSSCCS 1064

[Close]
BLAST of MS001158 vs. ExPASy TrEMBL
Match: A0A6A5N1F4 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00035386 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.8e-07
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 1  QLANQTRAPPQADSSFCSSAYGVLAAVSSCCS 33
          QLANQTRAPP+ADSSFCSSAYGVLAAVSSCCS
Sbjct: 43 QLANQTRAPPRADSSFCSSAYGVLAAVSSCCS 74

[Close]
BLAST of MS001158 vs. ExPASy TrEMBL
Match: A0A3P6D4D0 (Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRASC143T45666Z PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.8e-07
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 1   QLANQTRAPPQADSSFCSSAYGVLAAVSSCCS 33
           QLANQTRAPP+ADSSFCSSAYGVLAAVSSCCS
Sbjct: 187 QLANQTRAPPRADSSFCSSAYGVLAAVSSCCS 218

[Close]
BLAST of MS001158 vs. ExPASy TrEMBL
Match: A0A6D2LA75 (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS25398 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.8e-07
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 1   QLANQTRAPPQADSSFCSSAYGVLAAVSSCCS 33
           QLANQTRAPP+ADSSFCSSAYGVLAAVSSCCS
Sbjct: 150 QLANQTRAPPRADSSFCSSAYGVLAAVSSCCS 181

The following BLAST results are available for this feature:
BLAST of MS001158 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG4909459.11.4e-0696.88hypothetical protein JHK87_055575 [Glycine soja][more]
CDY45547.11.4e-0696.88BnaCnng13060D [Brassica napus][more]
GEV46790.11.4e-0696.88carotenoid cleavage dioxygenase 1 [Tanacetum cinerariifolium][more]
CDY63600.11.4e-0696.88BnaUnng00870D [Brassica napus][more]
RYR67198.11.4e-0696.88hypothetical protein Ahy_A03g013506 isoform B [Arachis hypogaea][more]
BLAST of MS001158 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS001158 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2N9I7M32.3e-07100.00Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS48006 PE=4 SV=1[more]
A0A2N9FRF22.3e-07100.00Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17704 PE=4 SV=1[more]
A0A6A5N1F46.8e-0796.88Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00035386 PE=3 SV=1[more]
A0A3P6D4D06.8e-0796.88Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRASC143T45666Z PE=4 S... [more]
A0A6D2LA756.8e-0796.88Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS25398 ... [more]
BLAST of MS001158 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS001158.1MS001158.1mRNA