MS001157 (gene) Bitter gourd (TR) v1

Overview


Name	MS001157
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Cytochrome C assembly protein
Location	scaffold36: 1889221 .. 1889364 (-)
RNA-Seq Expression	MS001157
Synteny	MS001157

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTATTCTATATGTACATGTTCCTGCGGCTCGAATGAGTATTCTTGTTTATATCGCTATGGCTATAAACACTTTCTTGTTCCTATTAACAAAACATCCCCTTTTTCTTCGCTCTTCCGGAATCGGTACAGAAATGGGTGCGTTC

mRNA sequence

CGTATTCTATATGTACATGTTCCTGCGGCTCGAATGAGTATTCTTGTTTATATCGCTATGGCTATAAACACTTTCTTGTTCCTATTAACAAAACATCCCCTTTTTCTTCGCTCTTCCGGAATCGGTACAGAAATGGGTGCGTTC

Coding sequence (CDS)

CGTATTCTATATGTACATGTTCCTGCGGCTCGAATGAGTATTCTTGTTTATATCGCTATGGCTATAAACACTTTCTTGTTCCTATTAACAAAACATCCCCTTTTTCTTCGCTCTTCCGGAATCGGTACAGAAATGGGTGCGTTC

Protein sequence

RILYVHVPAARMSILVYIAMAINTFLFLLTKHPLFLRSSGIGTEMGAF

Homology

[Close]

BLAST of MS001157 vs. NCBI nr
Match: XP_025646917.1 (uncharacterized protein LOC112741938 [Arachis hypogaea] >RYR13612.1 hypothetical protein Ahy_B04g070516 isoform A [Arachis hypogaea])

HSP 1 Score: 91.7 bits (226), Expect = 1.9e-15
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 1  RILYVHVPAARMSILVYIAMAINTFLFLLTKHPLFLRSSGIGTEMGAF 49
          RILYVHVPAARMSILVYIAMAINTFLFLLTKHPLFLRSSG GTEMGAF
Sbjct: 52 RILYVHVPAARMSILVYIAMAINTFLFLLTKHPLFLRSSGTGTEMGAF 99

[Close]

BLAST of MS001157 vs. NCBI nr
Match: QUO98208.1 (cytochrome c biogenesis C [Dalbergia odorifera])

HSP 1 Score: 91.7 bits (226), Expect = 1.9e-15
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 1  RILYVHVPAARMSILVYIAMAINTFLFLLTKHPLFLRSSGIGTEMGAF 49
          RILYVHVPAARMSILVYIAMAINTFLFLLTKHPLFLRSSG GTEMGAF
Sbjct: 52 RILYVHVPAARMSILVYIAMAINTFLFLLTKHPLFLRSSGTGTEMGAF 99

[Close]

BLAST of MS001157 vs. NCBI nr
Match: QHN95462.1 (Putative cytochrome c biosynthesis ccmC-like mitochondrial protein [Arachis hypogaea] >QWX88057.1 cytochrome c biogenesis C [Arachis hypogaea])

HSP 1 Score: 91.7 bits (226), Expect = 1.9e-15
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 1  RILYVHVPAARMSILVYIAMAINTFLFLLTKHPLFLRSSGIGTEMGAF 49
          RILYVHVPAARMSILVYIAMAINTFLFLLTKHPLFLRSSG GTEMGAF
Sbjct: 52 RILYVHVPAARMSILVYIAMAINTFLFLLTKHPLFLRSSGTGTEMGAF 99

[Close]

BLAST of MS001157 vs. NCBI nr
Match: YP_009498146.1 (cytochrome c biogenesis C [Senna tora] >AWW13948.1 cytochrome c biogenesis C [Senna tora])

HSP 1 Score: 89.4 bits (220), Expect = 9.4e-15
Identity = 46/48 (95.83%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 1  RILYVHVPAARMSILVYIAMAINTFLFLLTKHPLFLRSSGIGTEMGAF 49
          RILYVHVPAARMSILVYIA AINTFLFLLTKHPLFLRSSG GTEMGAF
Sbjct: 52 RILYVHVPAARMSILVYIATAINTFLFLLTKHPLFLRSSGTGTEMGAF 99

[Close]

BLAST of MS001157 vs. NCBI nr
Match: XP_027331742.1 (uncharacterized protein LOC113847080 [Abrus precatorius])

HSP 1 Score: 89.4 bits (220), Expect = 9.4e-15
Identity = 46/48 (95.83%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 1  RILYVHVPAARMSILVYIAMAINTFLFLLTKHPLFLRSSGIGTEMGAF 49
          RILYVHVPAARMSILVYIA AINTFLFLLTKHPLFLRSSG GTEMGAF
Sbjct: 52 RILYVHVPAARMSILVYIATAINTFLFLLTKHPLFLRSSGTGTEMGAF 99

[Close]

BLAST of MS001157 vs. ExPASy Swiss-Prot
Match: P92527 (Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Arabidopsis thaliana OX=3702 GN=CCMC PE=2 SV=4)

HSP 1 Score: 77.4 bits (189), Expect = 4.9e-14
Identity = 40/48 (83.33%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 1  RILYVHVPAARMSILVYIAMAINTFLFLLTKHPLFLRSSGIGTEMGAF 49
          RILYVHVP A MSI+VYIA AINTFLFLLTKHPL+L SSG G EMGAF
Sbjct: 52 RILYVHVPVAWMSIIVYIATAINTFLFLLTKHPLYLCSSGTGIEMGAF 99

[Close]

BLAST of MS001157 vs. ExPASy Swiss-Prot
Match: P38453 (Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Marchantia polymorpha OX=3197 GN=CCMC PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 6.2e-09
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 1  RILYVHVPAARMSILVYIAMAINTFLFLLTKHPLFLRSSGIGTEMGA 48
          RI+YVHVPAA MS+L+YIAMAI++ LFLLTKHPLF   S    ++GA
Sbjct: 52 RIIYVHVPAAWMSLLIYIAMAISSVLFLLTKHPLFQLFSKTAAKIGA 98

[Close]

BLAST of MS001157 vs. ExPASy TrEMBL
Match: A0A444ZHG3 (Cytochrom_C_asm domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_B04g070516 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 9.2e-16
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 1  RILYVHVPAARMSILVYIAMAINTFLFLLTKHPLFLRSSGIGTEMGAF 49
          RILYVHVPAARMSILVYIAMAINTFLFLLTKHPLFLRSSG GTEMGAF
Sbjct: 52 RILYVHVPAARMSILVYIAMAINTFLFLLTKHPLFLRSSGTGTEMGAF 99

[Close]

BLAST of MS001157 vs. ExPASy TrEMBL
Match: A0A385G2C3 (Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Ammopiptanthus mongolicus OX=126911 GN=ccmc PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.6e-15
Identity = 46/48 (95.83%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 1  RILYVHVPAARMSILVYIAMAINTFLFLLTKHPLFLRSSGIGTEMGAF 49
          RILYVHVPAARMSILVYIA AINTFLFLLTKHPLFLRSSG GTEMGAF
Sbjct: 52 RILYVHVPAARMSILVYIATAINTFLFLLTKHPLFLRSSGTGTEMGAF 99

[Close]

BLAST of MS001157 vs. ExPASy TrEMBL
Match: R4IUH3 (Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Vicia faba OX=3906 GN=ccmC PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.6e-15
Identity = 46/48 (95.83%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 1   RILYVHVPAARMSILVYIAMAINTFLFLLTKHPLFLRSSGIGTEMGAF 49
           RILYVHVPAARMSILVYIA AINTFLFLLTKHPLFLRSSG GTEMGAF
Sbjct: 54  RILYVHVPAARMSILVYIATAINTFLFLLTKHPLFLRSSGTGTEMGAF 101

[Close]

BLAST of MS001157 vs. ExPASy TrEMBL
Match: A0A2H4V4M5 (Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Olea europaea subsp. europaea OX=158383 GN=ccmC PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.6e-15
Identity = 46/48 (95.83%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 1  RILYVHVPAARMSILVYIAMAINTFLFLLTKHPLFLRSSGIGTEMGAF 49
          RILYVHVPAARMSILVYIA AINTFLFLLTKHPLFLRSSG GTEMGAF
Sbjct: 52 RILYVHVPAARMSILVYIATAINTFLFLLTKHPLFLRSSGTGTEMGAF 99

[Close]

BLAST of MS001157 vs. ExPASy TrEMBL
Match: A0A2H4V4Q4 (Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Olea europaea subsp. guanchica OX=158384 GN=ccmC PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.6e-15
Identity = 46/48 (95.83%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 1  RILYVHVPAARMSILVYIAMAINTFLFLLTKHPLFLRSSGIGTEMGAF 49
          RILYVHVPAARMSILVYIA AINTFLFLLTKHPLFLRSSG GTEMGAF
Sbjct: 52 RILYVHVPAARMSILVYIATAINTFLFLLTKHPLFLRSSGTGTEMGAF 99

[Close]

BLAST of MS001157 vs. TAIR 10
Match: AT2G07681.1 (Cytochrome C assembly protein )

HSP 1 Score: 85.1 bits (209), Expect = 1.7e-17
Identity = 43/48 (89.58%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1   RILYVHVPAARMSILVYIAMAINTFLFLLTKHPLFLRSSGIGTEMGAF 49
           RILYVHVPAARMSI+VYIA AINTFLFLLTKHPL+LRSSG G EMGAF
Sbjct: 432 RILYVHVPAARMSIIVYIATAINTFLFLLTKHPLYLRSSGTGIEMGAF 479

[Close]

BLAST of MS001157 vs. TAIR 10
Match: AT2G07771.2 (Cytochrome C assembly protein )

HSP 1 Score: 85.1 bits (209), Expect = 1.7e-17
Identity = 43/48 (89.58%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1  RILYVHVPAARMSILVYIAMAINTFLFLLTKHPLFLRSSGIGTEMGAF 49
          RILYVHVPAARMSI+VYIA AINTFLFLLTKHPL+LRSSG G EMGAF
Sbjct: 52 RILYVHVPAARMSIIVYIATAINTFLFLLTKHPLYLRSSGTGIEMGAF 99

[Close]

BLAST of MS001157 vs. TAIR 10
Match: ATMG00900.1 (cytochrome C biogenesis 256 )

HSP 1 Score: 85.1 bits (209), Expect = 1.7e-17
Identity = 43/48 (89.58%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1  RILYVHVPAARMSILVYIAMAINTFLFLLTKHPLFLRSSGIGTEMGAF 49
          RILYVHVPAARMSI+VYIA AINTFLFLLTKHPL+LRSSG G EMGAF
Sbjct: 52 RILYVHVPAARMSIIVYIATAINTFLFLLTKHPLYLRSSGTGIEMGAF 99

The following BLAST results are available for this feature:

BLAST of MS001157 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_025646917.1	1.9e-15	97.92	uncharacterized protein LOC112741938 [Arachis hypogaea] >RYR13612.1 hypothetical...	[more]
QUO98208.1	1.9e-15	97.92	cytochrome c biogenesis C [Dalbergia odorifera]	[more]
QHN95462.1	1.9e-15	97.92	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein [Arachis hypo...	[more]
YP_009498146.1	9.4e-15	95.83	cytochrome c biogenesis C [Senna tora] >AWW13948.1 cytochrome c biogenesis C [Se...	[more]
XP_027331742.1	9.4e-15	95.83	uncharacterized protein LOC113847080 [Abrus precatorius]	[more]

BLAST of MS001157 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92527	4.9e-14	83.33	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Arabidopsi...	[more]
P38453	6.2e-09	65.96	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Marchantia...	[more]

BLAST of MS001157 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A444ZHG3	9.2e-16	97.92	Cytochrom_C_asm domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_B04...	[more]
A0A385G2C3	4.6e-15	95.83	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Ammopiptan...	[more]
R4IUH3	4.6e-15	95.83	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Vicia faba...	[more]
A0A2H4V4M5	4.6e-15	95.83	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Olea europ...	[more]
A0A2H4V4Q4	4.6e-15	95.83	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Olea europ...	[more]

BLAST of MS001157 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07681.1	1.7e-17	89.58	Cytochrome C assembly protein	[more]
AT2G07771.2	1.7e-17	89.58	Cytochrome C assembly protein	[more]
ATMG00900.1	1.7e-17	89.58	cytochrome C biogenesis 256	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001157.1	MS001157.1	mRNA