MS001147 (gene) Bitter gourd (TR) v1

Overview
NameMS001147
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRibosomal RNA small subunit methyltransferase A
Locationscaffold36: 1801184 .. 1801747 (-)
RNA-Seq ExpressionMS001147
SyntenyMS001147
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTGGCATTTCCCCAACTCTCGTGGTGGTTGTGGAGTGGGAAGAATAAAGAACCTCGAAGCTCTAATGGGTCTCCTCTAAATGCTTCCCTAGATACAGCCATCCGGGAACCAGATACTCTAAAATTTCCTTTAGTTAATGGGGCTAACATATCATCCTCGTCTAGAAGGGTGAAGCGGAAATGGCATAGTCGTGAAGAGAGGAAAATTGATAGGGAGTATGACATTGTTCTTGTTCCATCTGACGGAGGATGTGTTTCAGGGTCAGAGTCTGATGACTCAGATTGGTCAATTGGATGGTCGGAACCCCACGGACCTGGATTCCAGAGCGATGACGATCCAGACAACAGTTTCGCTGTGTTGGTTCCATGTTATGGACGCATGTACAATGATTTTGTAGATGAAACTAAAAACAGTATCCTAAGTGCTGTTGGGAACATCAACGATAGCTTTTCTGCTGGTAAGAGCTGTTCCTTCTCAAGCTTGCATTTTGATGGTTGTTGCGTGTTAGTTATTGCTTTTGCCTTCCAAAATATTCTTCTAGTCCTCTTTCGTGAACAA

mRNA sequence

ATGGCTGTGGCATTTCCCCAACTCTCGTGGTGGTTGTGGAGTGGGAAGAATAAAGAACCTCGAAGCTCTAATGGGTCTCCTCTAAATGCTTCCCTAGATACAGCCATCCGGGAACCAGATACTCTAAAATTTCCTTTAGTTAATGGGGCTAACATATCATCCTCGTCTAGAAGGGTGAAGCGGAAATGGCATAGTCGTGAAGAGAGGAAAATTGATAGGGAGTATGACATTGTTCTTGTTCCATCTGACGGAGGATGTGTTTCAGGGTCAGAGTCTGATGACTCAGATTGGTCAATTGGATGGTCGGAACCCCACGGACCTGGATTCCAGAGCGATGACGATCCAGACAACAGTTTCGCTGTGTTGGTTCCATGTTATGGACGCATGTACAATGATTTTGTAGATGAAACTAAAAACAGTATCCTAAGTGCTGTTGGGAACATCAACGATAGCTTTTCTGCTGGTAAGAGCTGTTCCTTCTCAAGCTTGCATTTTGATGGTTGTTGCGTGTTAGTTATTGCTTTTGCCTTCCAAAATATTCTTCTAGTCCTCTTTCGTGAACAA

Coding sequence (CDS)

ATGGCTGTGGCATTTCCCCAACTCTCGTGGTGGTTGTGGAGTGGGAAGAATAAAGAACCTCGAAGCTCTAATGGGTCTCCTCTAAATGCTTCCCTAGATACAGCCATCCGGGAACCAGATACTCTAAAATTTCCTTTAGTTAATGGGGCTAACATATCATCCTCGTCTAGAAGGGTGAAGCGGAAATGGCATAGTCGTGAAGAGAGGAAAATTGATAGGGAGTATGACATTGTTCTTGTTCCATCTGACGGAGGATGTGTTTCAGGGTCAGAGTCTGATGACTCAGATTGGTCAATTGGATGGTCGGAACCCCACGGACCTGGATTCCAGAGCGATGACGATCCAGACAACAGTTTCGCTGTGTTGGTTCCATGTTATGGACGCATGTACAATGATTTTGTAGATGAAACTAAAAACAGTATCCTAAGTGCTGTTGGGAACATCAACGATAGCTTTTCTGCTGGTAAGAGCTGTTCCTTCTCAAGCTTGCATTTTGATGGTTGTTGCGTGTTAGTTATTGCTTTTGCCTTCCAAAATATTCTTCTAGTCCTCTTTCGTGAACAA

Protein sequence

MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDPDNSFAVLVPCYGRMYNDFVDETKNSILSAVGNINDSFSAGKSCSFSSLHFDGCCVLVIAFAFQNILLVLFREQ
Homology
[Close]
BLAST of MS001147 vs. NCBI nr
Match: XP_022132228.1 (uncharacterized protein LOC111005141 isoform X1 [Momordica charantia] >XP_022132229.1 uncharacterized protein LOC111005141 isoform X1 [Momordica charantia] >XP_022132230.1 uncharacterized protein LOC111005141 isoform X1 [Momordica charantia] >XP_022132231.1 uncharacterized protein LOC111005141 isoform X1 [Momordica charantia] >XP_022132232.1 uncharacterized protein LOC111005141 isoform X1 [Momordica charantia])

HSP 1 Score: 318.2 bits (814), Expect = 4.9e-83
Identity = 154/162 (95.06%), Postives = 157/162 (96.91%), Query Frame = 0 

Query: 1   MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVK 60
           MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVK
Sbjct: 1   MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVK 60

Query: 61  RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDPDNSFA 120
           RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEP+GPGFQSDDDPDNSFA
Sbjct: 61  RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPNGPGFQSDDDPDNSFA 120

Query: 121 VLVPCYGRMYNDFVDETKNSILSAVGNINDSFSAG-KSCSFS 162
           VLVPCYG MYNDFVDETKNSILSAVGNINDSFSA    C+F+
Sbjct: 121 VLVPCYGHMYNDFVDETKNSILSAVGNINDSFSAADNGCTFA 162

[Close]
BLAST of MS001147 vs. NCBI nr
Match: KAA0065096.1 (Ribosomal RNA small subunit methyltransferase A [Cucumis melo var. makuwa])

HSP 1 Score: 317.4 bits (812), Expect = 8.4e-83
Identity = 155/168 (92.26%), Postives = 160/168 (95.24%), Query Frame = 0 

Query: 1   MAVAFPQLSWWLWSGKNKEPRSSN-GSPLNASLDTAIREPDTLKFPLVNGANISSSSRRV 60
           M+VAFPQLSWWLWSGK+KEPRSSN GS LNASLDTA RE DTLKFPLVNGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDPDNSF 120
           KRKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDD+ DNSF
Sbjct: 61  KRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120

Query: 121 AVLVPCYGRMYNDFVDETKNSILSAVGNINDSFSAGKSCSFSSLHFDG 168
           AVLVPCYGR+YNDFVDETKNSILSAVGNINDSFSAGKSC FSSLH  G
Sbjct: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKSCFFSSLHLVG 168

[Close]
BLAST of MS001147 vs. NCBI nr
Match: XP_022132233.1 (uncharacterized protein LOC111005141 isoform X2 [Momordica charantia])

HSP 1 Score: 317.0 bits (811), Expect = 1.1e-82
Identity = 152/154 (98.70%), Postives = 153/154 (99.35%), Query Frame = 0 

Query: 1   MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVK 60
           MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVK
Sbjct: 1   MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVK 60

Query: 61  RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDPDNSFA 120
           RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEP+GPGFQSDDDPDNSFA
Sbjct: 61  RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPNGPGFQSDDDPDNSFA 120

Query: 121 VLVPCYGRMYNDFVDETKNSILSAVGNINDSFSA 155
           VLVPCYG MYNDFVDETKNSILSAVGNINDSFSA
Sbjct: 121 VLVPCYGHMYNDFVDETKNSILSAVGNINDSFSA 154

[Close]
BLAST of MS001147 vs. NCBI nr
Match: KAG7020253.1 (hypothetical protein SDJN02_16936, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 307.8 bits (787), Expect = 6.6e-80
Identity = 146/160 (91.25%), Postives = 152/160 (95.00%), Query Frame = 0 

Query: 1   MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVK 60
           M+VAFPQLSWW WSGK+KEPR+SNGS  NASLDT IREPDTLKFPL NGANISSSSRRV+
Sbjct: 1   MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVR 60

Query: 61  RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDPDNSFA 120
           RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDD+ DNSFA
Sbjct: 61  RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDETDNSFA 120

Query: 121 VLVPCYGRMYNDFVDETKNSILSAVGNINDSFSAGKSCSF 161
           VLVPCYGR+YNDFVDETKNSILSA GNINDSFSAGKSC F
Sbjct: 121 VLVPCYGRVYNDFVDETKNSILSASGNINDSFSAGKSCFF 160

[Close]
BLAST of MS001147 vs. NCBI nr
Match: XP_038886443.1 (uncharacterized protein LOC120076637 [Benincasa hispida] >XP_038886444.1 uncharacterized protein LOC120076637 [Benincasa hispida] >XP_038886445.1 uncharacterized protein LOC120076637 [Benincasa hispida] >XP_038886446.1 uncharacterized protein LOC120076637 [Benincasa hispida])

HSP 1 Score: 298.9 bits (764), Expect = 3.1e-77
Identity = 146/155 (94.19%), Postives = 150/155 (96.77%), Query Frame = 0 

Query: 1   MAVAFPQLSWWLWSGKNKEPRSSN-GSPLNASLDTAIREPDTLKFPLVNGANISSSSRRV 60
           M+VAFPQLSWWLWSGK+KEPRSSN GS LNASLDTA RE DTLKFPLVNGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDPDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDD+ DNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120

Query: 121 AVLVPCYGRMYNDFVDETKNSILSAVGNINDSFSA 155
           AVLVPCYGR+YNDFVDETKNSILSAVGNINDSFSA
Sbjct: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA 155

[Close]
BLAST of MS001147 vs. ExPASy TrEMBL
Match: A0A6J1BRV5 (uncharacterized protein LOC111005141 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111005141 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.4e-83
Identity = 154/162 (95.06%), Postives = 157/162 (96.91%), Query Frame = 0 

Query: 1   MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVK 60
           MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVK
Sbjct: 1   MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVK 60

Query: 61  RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDPDNSFA 120
           RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEP+GPGFQSDDDPDNSFA
Sbjct: 61  RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPNGPGFQSDDDPDNSFA 120

Query: 121 VLVPCYGRMYNDFVDETKNSILSAVGNINDSFSAG-KSCSFS 162
           VLVPCYG MYNDFVDETKNSILSAVGNINDSFSA    C+F+
Sbjct: 121 VLVPCYGHMYNDFVDETKNSILSAVGNINDSFSAADNGCTFA 162

[Close]
BLAST of MS001147 vs. ExPASy TrEMBL
Match: A0A5A7VFJ3 (Ribosomal RNA small subunit methyltransferase A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004290 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 4.0e-83
Identity = 155/168 (92.26%), Postives = 160/168 (95.24%), Query Frame = 0 

Query: 1   MAVAFPQLSWWLWSGKNKEPRSSN-GSPLNASLDTAIREPDTLKFPLVNGANISSSSRRV 60
           M+VAFPQLSWWLWSGK+KEPRSSN GS LNASLDTA RE DTLKFPLVNGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDPDNSF 120
           KRKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDD+ DNSF
Sbjct: 61  KRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120

Query: 121 AVLVPCYGRMYNDFVDETKNSILSAVGNINDSFSAGKSCSFSSLHFDG 168
           AVLVPCYGR+YNDFVDETKNSILSAVGNINDSFSAGKSC FSSLH  G
Sbjct: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKSCFFSSLHLVG 168

[Close]
BLAST of MS001147 vs. ExPASy TrEMBL
Match: A0A6J1BVP6 (uncharacterized protein LOC111005141 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111005141 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 5.3e-83
Identity = 152/154 (98.70%), Postives = 153/154 (99.35%), Query Frame = 0 

Query: 1   MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVK 60
           MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVK
Sbjct: 1   MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVK 60

Query: 61  RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDPDNSFA 120
           RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEP+GPGFQSDDDPDNSFA
Sbjct: 61  RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPNGPGFQSDDDPDNSFA 120

Query: 121 VLVPCYGRMYNDFVDETKNSILSAVGNINDSFSA 155
           VLVPCYG MYNDFVDETKNSILSAVGNINDSFSA
Sbjct: 121 VLVPCYGHMYNDFVDETKNSILSAVGNINDSFSA 154

[Close]
BLAST of MS001147 vs. ExPASy TrEMBL
Match: A0A6J1KME1 (uncharacterized protein LOC111495931 OS=Cucurbita maxima OX=3661 GN=LOC111495931 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.9e-77
Identity = 141/154 (91.56%), Postives = 147/154 (95.45%), Query Frame = 0 

Query: 1   MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVK 60
           M+VAFPQLSWW WSGK+KEPR+SNGS  NASLDT IREPDTLKFPL NGANISSSSRRV+
Sbjct: 1   MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVR 60

Query: 61  RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDPDNSFA 120
           RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDD+ DNSFA
Sbjct: 61  RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDETDNSFA 120

Query: 121 VLVPCYGRMYNDFVDETKNSILSAVGNINDSFSA 155
           VLVPCYGR+YNDFVDETKNSILSA GNINDSFSA
Sbjct: 121 VLVPCYGRVYNDFVDETKNSILSAAGNINDSFSA 154

[Close]
BLAST of MS001147 vs. ExPASy TrEMBL
Match: A0A1S3BB05 (uncharacterized protein LOC103488121 OS=Cucumis melo OX=3656 GN=LOC103488121 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.5e-77
Identity = 144/155 (92.90%), Postives = 150/155 (96.77%), Query Frame = 0 

Query: 1   MAVAFPQLSWWLWSGKNKEPRSSN-GSPLNASLDTAIREPDTLKFPLVNGANISSSSRRV 60
           M+VAFPQLSWWLWSGK+KEPRSSN GS LNASLDTA RE DTLKFPLVNGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDPDNSF 120
           KRKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDD+ DNSF
Sbjct: 61  KRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120

Query: 121 AVLVPCYGRMYNDFVDETKNSILSAVGNINDSFSA 155
           AVLVPCYGR+YNDFVDETKNSILSA+GNINDSFSA
Sbjct: 121 AVLVPCYGRIYNDFVDETKNSILSAIGNINDSFSA 155

[Close]
BLAST of MS001147 vs. TAIR 10
Match: AT5G65480.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38060.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 80.5 bits (197), Expect = 1.6e-15
Identity = 52/145 (35.86%), Postives = 74/145 (51.03%), Query Frame = 0 

Query: 1   MAVAFPQLSWWLWSGKNKEPRSSNGS--PLNASLDTAIREPDTLKFPLVNGANISSSSRR 60
           MAV+FP+L  WL  G N + R    S    ++SL  ++++  T K       + SSS ++
Sbjct: 1   MAVSFPRLPRWLCGGSNTKDREKKESIPKGSSSLSPSLKKTTTSK-----TGSSSSSVKK 60

Query: 61  VKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDDPDNS 120
            KR W  R       E D +      G V   E DD +WSIGW EPHGPGF+++DD    
Sbjct: 61  TKRGWIGRGGSGSGGEEDKI------GNVVFPEPDDPEWSIGWVEPHGPGFKAEDDDCGG 120

Query: 121 FAVLVPCYGRMYNDFVDETKNSILS 144
           F VLVP Y ++ +   ++  N   S
Sbjct: 121 FVVLVPLYKKVMDGSGNQIPNGFFS 134

[Close]
BLAST of MS001147 vs. TAIR 10
Match: AT4G38060.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65480.1); Has 63 Blast hits to 63 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.8 bits (151), Expect = 3.5e-10
Identity = 36/75 (48.00%), Postives = 44/75 (58.67%), Query Frame = 0 

Query: 88  SGSES------DDSDWSIGWSEPHGPGFQSDDD-PDNSFAVLVPCYGRMYNDFVDETKNS 147
           SGSES      D  +WS+GW+EPHGP FQSDD+  D  F VLVPCY R   +      N 
Sbjct: 48  SGSESVDVVAGDGPEWSVGWTEPHGPDFQSDDEGNDGGFLVLVPCY-RAVVEGSSNNNNQ 107

Query: 148 ILSAVGNINDSFSAG 156
           +LSAV N+ +    G
Sbjct: 108 LLSAVKNLPNGLPPG 121

[Close]
BLAST of MS001147 vs. TAIR 10
Match: AT4G38060.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 62.4 bits (150), Expect = 4.5e-10
Identity = 35/68 (51.47%), Postives = 42/68 (61.76%), Query Frame = 0 

Query: 88  SGSES------DDSDWSIGWSEPHGPGFQSDDD-PDNSFAVLVPCYGRMYNDFVDETKNS 147
           SGSES      D  +WS+GW+EPHGP FQSDD+  D  F VLVPCY R   +      N 
Sbjct: 48  SGSESVDVVAGDGPEWSVGWTEPHGPDFQSDDEGNDGGFLVLVPCY-RAVVEGSSNNNNQ 107

Query: 148 ILSAVGNI 149
           +LSAV N+
Sbjct: 108 LLSAVKNL 114

The following BLAST results are available for this feature:
BLAST of MS001147 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022132228.14.9e-8395.06uncharacterized protein LOC111005141 isoform X1 [Momordica charantia] >XP_022132... [more]
KAA0065096.18.4e-8392.26Ribosomal RNA small subunit methyltransferase A [Cucumis melo var. makuwa][more]
XP_022132233.11.1e-8298.70uncharacterized protein LOC111005141 isoform X2 [Momordica charantia][more]
KAG7020253.16.6e-8091.25hypothetical protein SDJN02_16936, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_038886443.13.1e-7794.19uncharacterized protein LOC120076637 [Benincasa hispida] >XP_038886444.1 unchara... [more]
BLAST of MS001147 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS001147 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1BRV52.4e-8395.06uncharacterized protein LOC111005141 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A5A7VFJ34.0e-8392.26Ribosomal RNA small subunit methyltransferase A OS=Cucumis melo var. makuwa OX=1... [more]
A0A6J1BVP65.3e-8398.70uncharacterized protein LOC111005141 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1KME11.9e-7791.56uncharacterized protein LOC111495931 OS=Cucurbita maxima OX=3661 GN=LOC111495931... [more]
A0A1S3BB052.5e-7792.90uncharacterized protein LOC103488121 OS=Cucumis melo OX=3656 GN=LOC103488121 PE=... [more]
BLAST of MS001147 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G65480.11.6e-1535.86unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT4G38060.13.5e-1048.00unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G38060.24.5e-1051.47unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34464:SF5SUBFAMILY NOT NAMEDcoord: 1..156
NoneNo IPR availablePANTHERPTHR34464OS09G0376300 PROTEINcoord: 1..156

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS001147.1MS001147.1mRNA