MS001137 (gene) Bitter gourd (TR) v1

Overview
NameMS001137
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCHCH domain-containing protein
Locationscaffold36: 1722043 .. 1722659 (+)
RNA-Seq ExpressionMS001137
SyntenyMS001137
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTAGTTCTGCTCCTCCACCAGCACCTGTACAAGGTGGTGGAGGTGGGTCTATGCTCGGAGGACTCGGCGCCACTATTGCTCAAGGTGAGTTTAGAAGCACTTGCATCTTCTTTAACAACCGTAAATGATTTTAGTTTTATCATAACCATTGTATTTTTAATTTTTTTTATTTCTTTGCTGATGTGCAGGTATGGCCTTTGGTACTGGAAGTGCGGTGGCTCACAGGGCTGTTGATGCTGTAATGGGTCCTCGGGTCATTCAGCATGAGTCTGTTGATTCATCAGCTGCCCCTTCTTCAGTGCCTACTGCAGCAAGCAATGTTGGAGGTTCTGAAGTTTGTAATGGTCAATCAAAGGCCTTGCAAGATGTAGGTTTCGTGTTCTCTATGTTATTAATAACACAACTATGTCTAGTATGCATTCCCTTTTATTTTCTTGGATAGATTGTCAGTTGATCATGGTCAAGCCATTTTTTAGGCGTTATTTTCATACTAAAGCGGTACTTTTTTCCCCTTCTGCAGTGCCTGAATCACTATGGAAGTGACATTGGCAAGTGCCAGTTCTACATGGATATGTTGCAGGAATGTCGCAGAAGCTCGGGTCCTGGTTTGGGTGCT

mRNA sequence

GTTAGTTCTGCTCCTCCACCAGCACCTGTACAAGGTGGTGGAGGTGGGTCTATGCTCGGAGGACTCGGCGCCACTATTGCTCAAGGTATGGCCTTTGGTACTGGAAGTGCGGTGGCTCACAGGGCTGTTGATGCTGTAATGGGTCCTCGGGTCATTCAGCATGAGTCTGTTGATTCATCAGCTGCCCCTTCTTCAGTGCCTACTGCAGCAAGCAATGTTGGAGGTTCTGAAGTTTGTAATGGTCAATCAAAGGCCTTGCAAGATTGCCTGAATCACTATGGAAGTGACATTGGCAAGTGCCAGTTCTACATGGATATGTTGCAGGAATGTCGCAGAAGCTCGGGTCCTGGTTTGGGTGCT

Coding sequence (CDS)

GTTAGTTCTGCTCCTCCACCAGCACCTGTACAAGGTGGTGGAGGTGGGTCTATGCTCGGAGGACTCGGCGCCACTATTGCTCAAGGTATGGCCTTTGGTACTGGAAGTGCGGTGGCTCACAGGGCTGTTGATGCTGTAATGGGTCCTCGGGTCATTCAGCATGAGTCTGTTGATTCATCAGCTGCCCCTTCTTCAGTGCCTACTGCAGCAAGCAATGTTGGAGGTTCTGAAGTTTGTAATGGTCAATCAAAGGCCTTGCAAGATTGCCTGAATCACTATGGAAGTGACATTGGCAAGTGCCAGTTCTACATGGATATGTTGCAGGAATGTCGCAGAAGCTCGGGTCCTGGTTTGGGTGCT

Protein sequence

VSSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSSAAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKCQFYMDMLQECRRSSGPGLGA
Homology
BLAST of MS001137 vs. NCBI nr
Match: XP_022132139.1 (uncharacterized protein C6C3.02c-like [Momordica charantia])

HSP 1 Score: 235.3 bits (599), Expect = 2.7e-58
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0

Query: 1   VSSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSS 60
           VSSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSS
Sbjct: 27  VSSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSS 86

Query: 61  AAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKCQFYMDMLQECRRSSGPGLGA 120
           AAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKCQFYMDMLQECRRSSGPGLGA
Sbjct: 87  AAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKCQFYMDMLQECRRSSGPGLGA 146

BLAST of MS001137 vs. NCBI nr
Match: XP_022962551.1 (coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial [Cucurbita moschata] >XP_023545354.1 coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial [Cucurbita pepo subsp. pepo] >KAG7029663.1 SPAC6C3.02c [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 196.4 bits (498), Expect = 1.4e-46
Identity = 101/118 (85.59%), Postives = 107/118 (90.68%), Query Frame = 0

Query: 3   SAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSSAA 62
           SAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHE+VDSS  
Sbjct: 29  SAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSS-T 88

Query: 63  PSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKCQFYMDMLQECRRSSGPGLGA 121
           PSS P+ ASN GGS+ CN QSK+ QDCLNHYGSDI KCQFY+DMLQECR+SSG  LGA
Sbjct: 89  PSSAPSVASNPGGSDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRKSSGSVLGA 145

BLAST of MS001137 vs. NCBI nr
Match: KAA0065106.1 (coiled-coil-helix-coiled-coil-helix domain-containing protein 10 [Cucumis melo var. makuwa])

HSP 1 Score: 196.1 bits (497), Expect = 1.8e-46
Identity = 101/120 (84.17%), Postives = 108/120 (90.00%), Query Frame = 0

Query: 1   VSSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSS 60
           V+SAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPR IQHE++DSS
Sbjct: 27  VNSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRTIQHETIDSS 86

Query: 61  AAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKCQFYMDMLQECRRSSGPGLGA 120
           A  SS P+ ASN GGS+ CN QSK+ QDCLNHYGSDI KCQFY+DMLQECRRSSG  LGA
Sbjct: 87  A--SSAPSVASNSGGSDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRRSSGSVLGA 144

BLAST of MS001137 vs. NCBI nr
Match: XP_008444901.1 (PREDICTED: uncharacterized protein C6C3.02c-like [Cucumis melo])

HSP 1 Score: 194.9 bits (494), Expect = 4.0e-46
Identity = 100/120 (83.33%), Postives = 108/120 (90.00%), Query Frame = 0

Query: 1   VSSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSS 60
           V+SAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPR IQHE++DSS
Sbjct: 27  VNSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRTIQHETIDSS 86

Query: 61  AAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKCQFYMDMLQECRRSSGPGLGA 120
           A  SS P+ A+N GGS+ CN QSK+ QDCLNHYGSDI KCQFY+DMLQECRRSSG  LGA
Sbjct: 87  A--SSAPSVANNSGGSDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRRSSGSVLGA 144

BLAST of MS001137 vs. NCBI nr
Match: XP_022997290.1 (coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 194.1 bits (492), Expect = 6.8e-46
Identity = 100/119 (84.03%), Postives = 107/119 (89.92%), Query Frame = 0

Query: 2   SSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSSA 61
           +SAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHE+VDSS 
Sbjct: 28  NSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSS- 87

Query: 62  APSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKCQFYMDMLQECRRSSGPGLGA 121
            PSS P+ A N GGS+ CN QSK+ QDCLNHYGSDI KCQFY+DMLQECR+SSG  LGA
Sbjct: 88  TPSSAPSVAINPGGSDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRKSSGSVLGA 145

BLAST of MS001137 vs. ExPASy TrEMBL
Match: A0A6J1BS82 (uncharacterized protein C6C3.02c-like OS=Momordica charantia OX=3673 GN=LOC111005079 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.3e-58
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0

Query: 1   VSSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSS 60
           VSSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSS
Sbjct: 27  VSSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSS 86

Query: 61  AAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKCQFYMDMLQECRRSSGPGLGA 120
           AAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKCQFYMDMLQECRRSSGPGLGA
Sbjct: 87  AAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKCQFYMDMLQECRRSSGPGLGA 146

BLAST of MS001137 vs. ExPASy TrEMBL
Match: A0A6J1HDK4 (coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111462950 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 6.6e-47
Identity = 101/118 (85.59%), Postives = 107/118 (90.68%), Query Frame = 0

Query: 3   SAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSSAA 62
           SAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHE+VDSS  
Sbjct: 29  SAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSS-T 88

Query: 63  PSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKCQFYMDMLQECRRSSGPGLGA 121
           PSS P+ ASN GGS+ CN QSK+ QDCLNHYGSDI KCQFY+DMLQECR+SSG  LGA
Sbjct: 89  PSSAPSVASNPGGSDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRKSSGSVLGA 145

BLAST of MS001137 vs. ExPASy TrEMBL
Match: A0A5A7VFK2 (Coiled-coil-helix-coiled-coil-helix domain-containing protein 10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004400 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 8.7e-47
Identity = 101/120 (84.17%), Postives = 108/120 (90.00%), Query Frame = 0

Query: 1   VSSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSS 60
           V+SAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPR IQHE++DSS
Sbjct: 27  VNSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRTIQHETIDSS 86

Query: 61  AAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKCQFYMDMLQECRRSSGPGLGA 120
           A  SS P+ ASN GGS+ CN QSK+ QDCLNHYGSDI KCQFY+DMLQECRRSSG  LGA
Sbjct: 87  A--SSAPSVASNSGGSDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRRSSGSVLGA 144

BLAST of MS001137 vs. ExPASy TrEMBL
Match: A0A1S3BAZ1 (uncharacterized protein C6C3.02c-like OS=Cucumis melo OX=3656 GN=LOC103488112 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.9e-46
Identity = 100/120 (83.33%), Postives = 108/120 (90.00%), Query Frame = 0

Query: 1   VSSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSS 60
           V+SAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPR IQHE++DSS
Sbjct: 27  VNSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRTIQHETIDSS 86

Query: 61  AAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKCQFYMDMLQECRRSSGPGLGA 120
           A  SS P+ A+N GGS+ CN QSK+ QDCLNHYGSDI KCQFY+DMLQECRRSSG  LGA
Sbjct: 87  A--SSAPSVANNSGGSDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRRSSGSVLGA 144

BLAST of MS001137 vs. ExPASy TrEMBL
Match: A0A6J1K966 (coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111492237 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.3e-46
Identity = 100/119 (84.03%), Postives = 107/119 (89.92%), Query Frame = 0

Query: 2   SSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSSA 61
           +SAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHE+VDSS 
Sbjct: 28  NSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSS- 87

Query: 62  APSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKCQFYMDMLQECRRSSGPGLGA 121
            PSS P+ A N GGS+ CN QSK+ QDCLNHYGSDI KCQFY+DMLQECR+SSG  LGA
Sbjct: 88  TPSSAPSVAINPGGSDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRKSSGSVLGA 145

BLAST of MS001137 vs. TAIR 10
Match: AT5G64400.1 (CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625); BEST Arabidopsis thaliana protein match is: Cox19-like CHCH family protein (TAIR:AT5G09570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 141.7 bits (356), Expect = 3.7e-34
Identity = 75/121 (61.98%), Postives = 94/121 (77.69%), Query Frame = 0

Query: 1   VSSAPPPAPVQ-GGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDS 60
           V  APPPAP Q  GGGG M  G+G+TIAQGMAFGTGSAVAHRAVD+VMGPR IQHE+V++
Sbjct: 27  VHRAPPPAPAQASGGGGGMFSGIGSTIAQGMAFGTGSAVAHRAVDSVMGPRTIQHEAVEA 86

Query: 61  SAAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKCQFYMDMLQECRRSSGPGLG 120
           ++A S+ P  ++ +  S  C+  +KA QDC+  YGS+I KCQFYMDML ECR++SG  +G
Sbjct: 87  ASA-SAAPAGSAML--SSTCDIHAKAFQDCIGSYGSEISKCQFYMDMLSECRKNSGSVIG 144

BLAST of MS001137 vs. TAIR 10
Match: AT5G09570.1 (Cox19-like CHCH family protein )

HSP 1 Score: 125.2 bits (313), Expect = 3.6e-29
Identity = 65/120 (54.17%), Postives = 85/120 (70.83%), Query Frame = 0

Query: 1   VSSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSS 60
           V+ APPPA  Q   GGS LG +GA+I +G+A+GTG+A  HR VD+VMGPR  +HE+V   
Sbjct: 28  VNRAPPPATAQPSSGGSFLGNIGASITEGLAWGTGTAFGHRVVDSVMGPRTFKHETV--- 87

Query: 61  AAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKCQFYMDMLQECRRSSGPGLGA 120
              S VP+AA+ +     C+  SKA QDC+NH+GSDI KCQFYMDML EC+++SG  + A
Sbjct: 88  --VSQVPSAANTM---TACDIHSKAFQDCVNHFGSDISKCQFYMDMLSECKKNSGSVVAA 139

BLAST of MS001137 vs. TAIR 10
Match: AT5G64400.2 (BEST Arabidopsis thaliana protein match is: Cox19-like CHCH family protein (TAIR:AT5G09570.1); Has 127 Blast hits to 125 proteins in 40 species: Archae - 0; Bacteria - 9; Metazoa - 16; Fungi - 2; Plants - 64; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink). )

HSP 1 Score: 92.4 bits (228), Expect = 2.6e-19
Identity = 54/89 (60.67%), Postives = 68/89 (76.40%), Query Frame = 0

Query: 1   VSSAPPPAPVQ-GGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDS 60
           V  APPPAP Q  GGGG M  G+G+TIAQGMAFGTGSAVAHRAVD+VMGPR IQHE+V++
Sbjct: 27  VHRAPPPAPAQASGGGGGMFSGIGSTIAQGMAFGTGSAVAHRAVDSVMGPRTIQHEAVEA 86

Query: 61  SAAPSSVPTAASNVGGSEVCNGQSKALQD 89
           ++A S+ P  ++ +  S  C+  +KA QD
Sbjct: 87  ASA-SAAPAGSAML--SSTCDIHAKAFQD 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022132139.12.7e-58100.00uncharacterized protein C6C3.02c-like [Momordica charantia][more]
XP_022962551.11.4e-4685.59coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial ... [more]
KAA0065106.11.8e-4684.17coiled-coil-helix-coiled-coil-helix domain-containing protein 10 [Cucumis melo v... [more]
XP_008444901.14.0e-4683.33PREDICTED: uncharacterized protein C6C3.02c-like [Cucumis melo][more]
XP_022997290.16.8e-4684.03coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial-... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1BS821.3e-58100.00uncharacterized protein C6C3.02c-like OS=Momordica charantia OX=3673 GN=LOC11100... [more]
A0A6J1HDK46.6e-4785.59coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial ... [more]
A0A5A7VFK28.7e-4784.17Coiled-coil-helix-coiled-coil-helix domain-containing protein 10 OS=Cucumis melo... [more]
A0A1S3BAZ11.9e-4683.33uncharacterized protein C6C3.02c-like OS=Cucumis melo OX=3656 GN=LOC103488112 PE... [more]
A0A6J1K9663.3e-4684.03coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial-... [more]
Match NameE-valueIdentityDescription
AT5G64400.13.7e-3461.98CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625); BEST Arabidopsis thaliana... [more]
AT5G09570.13.6e-2954.17Cox19-like CHCH family protein [more]
AT5G64400.22.6e-1960.67BEST Arabidopsis thaliana protein match is: Cox19-like CHCH family protein (TAIR... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010625CHCHPFAMPF06747CHCHcoord: 79..112
e-value: 8.7E-8
score: 32.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..74
NoneNo IPR availablePANTHERPTHR13523COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 2/NUR77coord: 2..114
NoneNo IPR availablePANTHERPTHR13523:SF16SUBFAMILY NOT NAMEDcoord: 2..114
IPR009069Cysteine alpha-hairpin motif superfamilySUPERFAMILY47072Cysteine alpha-hairpin motifcoord: 77..112

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS001137.1MS001137.1mRNA