MS001134 (gene) Bitter gourd (TR) v1

Overview


Name	MS001134
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold36: 1698604 .. 1699010 (-)
RNA-Seq Expression	MS001134
Synteny	MS001134

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGACCACAGACGAAATCAGAGTTTCAACGCCGACGCCGTCGCAGCCGTCGCAGCAGGGACGTTTTCCGGCCAGAAACAAGGAAGAAGAGAGTCATCGGCGATGGATCGCATAAAGAGTGGGTGCATGTCCTTTTATGCATCTTCTCAGGAGACACTCCGATATGTCAAAGCTTTTTTCGTCGGCTGGGTGAGTAATTAATTAATTAATTAATTAAATTAATTATCTCTCTCTATCTCTCTGCAGGAGAGGAATTAGATTTAAGAACAACGACGTTTTAATTTGGTTGGCTGCAGGGAAAGAAGATGACAGCTAAGACCGAAGAGGAAGCGGCAAAAGCAGATTTAAAGACTGCCAAAATGCAGGTTCAAGCTACTGAGGCAGCCGAGAACACCAAGAACCAACTT

mRNA sequence

AAAGACCACAGACGAAATCAGAGTTTCAACGCCGACGCCGTCGCAGCCGTCGCAGCAGGGACGTTTTCCGGCCAGAAACAAGGAAGAAGAGAGTCATCGGCGATGGATCGCATAAAGAGTGGGTGCATGTCCTTTTATGCATCTTCTCAGGAGACACTCCGATATGTCAAAGCTTTTTTCGTCGGCTGGGGAAAGAAGATGACAGCTAAGACCGAAGAGGAAGCGGCAAAAGCAGATTTAAAGACTGCCAAAATGCAGGTTCAAGCTACTGAGGCAGCCGAGAACACCAAGAACCAACTT

Coding sequence (CDS)

AAAGACCACAGACGAAATCAGAGTTTCAACGCCGACGCCGTCGCAGCCGTCGCAGCAGGGACGTTTTCCGGCCAGAAACAAGGAAGAAGAGAGTCATCGGCGATGGATCGCATAAAGAGTGGGTGCATGTCCTTTTATGCATCTTCTCAGGAGACACTCCGATATGTCAAAGCTTTTTTCGTCGGCTGGGGAAAGAAGATGACAGCTAAGACCGAAGAGGAAGCGGCAAAAGCAGATTTAAAGACTGCCAAAATGCAGGTTCAAGCTACTGAGGCAGCCGAGAACACCAAGAACCAACTT

Protein sequence

KDHRRNQSFNADAVAAVAAGTFSGQKQGRRESSAMDRIKSGCMSFYASSQETLRYVKAFFVGWGKKMTAKTEEEAAKADLKTAKMQVQATEAAENTKNQL

Homology

[Close]

BLAST of MS001134 vs. NCBI nr
Match: XP_022132044.1 (uncharacterized protein LOC111005010 [Momordica charantia])

HSP 1 Score: 126.7 bits (317), Expect = 1.1e-25
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 35  MDRIKSGCMSFYASSQETLRYVKAFFVGWGKKMTAKTEEEAAKADLKTAKMQVQATEAAE 94
           MDRIKSGCMSFYASSQETLRYVKAFFVGWGKKMTAKTEEEAAKADLKTAKMQVQATEAAE
Sbjct: 1   MDRIKSGCMSFYASSQETLRYVKAFFVGWGKKMTAKTEEEAAKADLKTAKMQVQATEAAE 60

Query: 95  NTKNQL 101
           NTKNQL
Sbjct: 61  NTKNQL 66

[Close]

BLAST of MS001134 vs. NCBI nr
Match: KAA0065108.1 (hypothetical protein E6C27_scaffold82G004430 [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 1.5e-22
Identity = 63/80 (78.75%), Postives = 70/80 (87.50%), Query Frame = 0


Query: 19 AGTFSGQKQGRRESSAMDRIKSGCMSFYASSQETLRYVKAFFVGWGKKMTAKTEEEAAKA 78
          A  FSG+KQ   E+S MDR+K GC SFYASSQETL YVKAFFVGWGKK+TAK+E+EAA+A
Sbjct: 17 ARAFSGRKQ---EASVMDRVKKGCTSFYASSQETLGYVKAFFVGWGKKITAKSEKEAAEA 76

Query: 79 DLKTAKMQVQATEAAENTKN 99
          DLKTAKMQVQATEAAEN KN
Sbjct: 77 DLKTAKMQVQATEAAENLKN 93

[Close]

BLAST of MS001134 vs. NCBI nr
Match: XP_008444894.1 (PREDICTED: uncharacterized protein LOC103488109 [Cucumis melo])

HSP 1 Score: 115.2 bits (287), Expect = 3.3e-22
Identity = 62/80 (77.50%), Postives = 70/80 (87.50%), Query Frame = 0


Query: 19 AGTFSGQKQGRRESSAMDRIKSGCMSFYASSQETLRYVKAFFVGWGKKMTAKTEEEAAKA 78
          A  FSG+KQ   E+S MDR+K GC SFYASSQETL YVKAFFVGWGKK+TAK+E+EAA+A
Sbjct: 17 ARAFSGRKQ---EASVMDRVKKGCTSFYASSQETLGYVKAFFVGWGKKITAKSEKEAAEA 76

Query: 79 DLKTAKMQVQATEAAENTKN 99
          DL+TAKMQVQATEAAEN KN
Sbjct: 77 DLRTAKMQVQATEAAENLKN 93

[Close]

BLAST of MS001134 vs. NCBI nr
Match: XP_023001883.1 (uncharacterized protein LOC111495934 [Cucurbita maxima])

HSP 1 Score: 114.4 bits (285), Expect = 5.7e-22
Identity = 61/79 (77.22%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 19 AGTFSGQKQGRRESSAMDRIKSGCMSFYASSQETLRYVKAFFVGWGKKMTAKTEEEAAKA 78
          AG FSG K+   E+S MDR+K GCM+ YASSQE LRYVKAFFVGWGKKMTAK+E+EAA+A
Sbjct: 16 AGRFSGWKE---EASVMDRVKKGCMAVYASSQEALRYVKAFFVGWGKKMTAKSEKEAAEA 75

Query: 79 DLKTAKMQVQATEAAENTK 98
          DLK AKMQV+ATEAAENTK
Sbjct: 76 DLKMAKMQVEATEAAENTK 91

[Close]

BLAST of MS001134 vs. NCBI nr
Match: XP_038886259.1 (uncharacterized protein LOC120076486 [Benincasa hispida])

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-21
Identity = 63/79 (79.75%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 19 AGTFSGQKQGRRESSAMDRIKSGCMSFYASSQETLRYVKAFFVGWGKKMTAKTEEEAAKA 78
          AGTFSG+KQ   E+S MD +K G   F ASSQETLRYVKAFFVGWGKKMTAK+E+EAA+A
Sbjct: 16 AGTFSGRKQ---EASVMDGVKKGWRFFCASSQETLRYVKAFFVGWGKKMTAKSEKEAAEA 75

Query: 79 DLKTAKMQVQATEAAENTK 98
          DLKTAKMQVQATEAAENTK
Sbjct: 76 DLKTAKMQVQATEAAENTK 91

[Close]

BLAST of MS001134 vs. ExPASy TrEMBL
Match: A0A6J1BRY6 (uncharacterized protein LOC111005010 OS=Momordica charantia OX=3673 GN=LOC111005010 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 5.4e-26
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 35  MDRIKSGCMSFYASSQETLRYVKAFFVGWGKKMTAKTEEEAAKADLKTAKMQVQATEAAE 94
           MDRIKSGCMSFYASSQETLRYVKAFFVGWGKKMTAKTEEEAAKADLKTAKMQVQATEAAE
Sbjct: 1   MDRIKSGCMSFYASSQETLRYVKAFFVGWGKKMTAKTEEEAAKADLKTAKMQVQATEAAE 60

Query: 95  NTKNQL 101
           NTKNQL
Sbjct: 61  NTKNQL 66

[Close]

BLAST of MS001134 vs. ExPASy TrEMBL
Match: A0A5A7VBV2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004430 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 7.3e-23
Identity = 63/80 (78.75%), Postives = 70/80 (87.50%), Query Frame = 0


Query: 19 AGTFSGQKQGRRESSAMDRIKSGCMSFYASSQETLRYVKAFFVGWGKKMTAKTEEEAAKA 78
          A  FSG+KQ   E+S MDR+K GC SFYASSQETL YVKAFFVGWGKK+TAK+E+EAA+A
Sbjct: 17 ARAFSGRKQ---EASVMDRVKKGCTSFYASSQETLGYVKAFFVGWGKKITAKSEKEAAEA 76

Query: 79 DLKTAKMQVQATEAAENTKN 99
          DLKTAKMQVQATEAAEN KN
Sbjct: 77 DLKTAKMQVQATEAAENLKN 93

[Close]

BLAST of MS001134 vs. ExPASy TrEMBL
Match: A0A1S3BC67 (uncharacterized protein LOC103488109 OS=Cucumis melo OX=3656 GN=LOC103488109 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.6e-22
Identity = 62/80 (77.50%), Postives = 70/80 (87.50%), Query Frame = 0


Query: 19 AGTFSGQKQGRRESSAMDRIKSGCMSFYASSQETLRYVKAFFVGWGKKMTAKTEEEAAKA 78
          A  FSG+KQ   E+S MDR+K GC SFYASSQETL YVKAFFVGWGKK+TAK+E+EAA+A
Sbjct: 17 ARAFSGRKQ---EASVMDRVKKGCTSFYASSQETLGYVKAFFVGWGKKITAKSEKEAAEA 76

Query: 79 DLKTAKMQVQATEAAENTKN 99
          DL+TAKMQVQATEAAEN KN
Sbjct: 77 DLRTAKMQVQATEAAENLKN 93

[Close]

BLAST of MS001134 vs. ExPASy TrEMBL
Match: A0A6J1KRV8 (uncharacterized protein LOC111495934 OS=Cucurbita maxima OX=3661 GN=LOC111495934 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.8e-22
Identity = 61/79 (77.22%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 19 AGTFSGQKQGRRESSAMDRIKSGCMSFYASSQETLRYVKAFFVGWGKKMTAKTEEEAAKA 78
          AG FSG K+   E+S MDR+K GCM+ YASSQE LRYVKAFFVGWGKKMTAK+E+EAA+A
Sbjct: 16 AGRFSGWKE---EASVMDRVKKGCMAVYASSQEALRYVKAFFVGWGKKMTAKSEKEAAEA 75

Query: 79 DLKTAKMQVQATEAAENTK 98
          DLK AKMQV+ATEAAENTK
Sbjct: 76 DLKMAKMQVEATEAAENTK 91

[Close]

BLAST of MS001134 vs. ExPASy TrEMBL
Match: A0A6J1GHI8 (uncharacterized protein LOC111454014 OS=Cucurbita moschata OX=3662 GN=LOC111454014 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.1e-21
Identity = 59/79 (74.68%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 19 AGTFSGQKQGRRESSAMDRIKSGCMSFYASSQETLRYVKAFFVGWGKKMTAKTEEEAAKA 78
          AG FSG K+   E+S MDR+K GC + YASSQE LRYVKAFFVGWGKKMTAK+E+EAA+A
Sbjct: 20 AGRFSGSKE---EASVMDRVKKGCRAVYASSQEALRYVKAFFVGWGKKMTAKSEKEAAEA 79

Query: 79 DLKTAKMQVQATEAAENTK 98
          DLK AKMQV+ATEAAEN K
Sbjct: 80 DLKMAKMQVEATEAAENAK 95

[Close]

BLAST of MS001134 vs. TAIR 10
Match: AT2G38465.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 66.6 bits (161), Expect = 1.3e-11
Identity = 36/68 (52.94%), Postives = 46/68 (67.65%), Query Frame = 0


Query: 33  SAMDRIKSGCMSFYASSQETLRYVKAFFVGWGKKMTAKTEEEAAKADLKTAKMQVQATEA 92
           S  DR+K+ C+S   + QE   YVKAFFVG  K++TAK E+EA +A L   KMQV AT+ 
Sbjct: 13  SLSDRVKTNCLSMAVTCQEGFSYVKAFFVGQTKRLTAKNEKEATEAHLTETKMQVDATDE 72

Query: 93  AENTKNQL 101
           AEN K +L
Sbjct: 73  AENAKKRL 80

The following BLAST results are available for this feature:

BLAST of MS001134 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132044.1	1.1e-25	100.00	uncharacterized protein LOC111005010 [Momordica charantia]	[more]
KAA0065108.1	1.5e-22	78.75	hypothetical protein E6C27_scaffold82G004430 [Cucumis melo var. makuwa]	[more]
XP_008444894.1	3.3e-22	77.50	PREDICTED: uncharacterized protein LOC103488109 [Cucumis melo]	[more]
XP_023001883.1	5.7e-22	77.22	uncharacterized protein LOC111495934 [Cucurbita maxima]	[more]
XP_038886259.1	1.3e-21	79.75	uncharacterized protein LOC120076486 [Benincasa hispida]	[more]

BLAST of MS001134 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS001134 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BRY6	5.4e-26	100.00	uncharacterized protein LOC111005010 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A5A7VBV2	7.3e-23	78.75	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3BC67	1.6e-22	77.50	uncharacterized protein LOC103488109 OS=Cucumis melo OX=3656 GN=LOC103488109 PE=...	[more]
A0A6J1KRV8	2.8e-22	77.22	uncharacterized protein LOC111495934 OS=Cucurbita maxima OX=3661 GN=LOC111495934...	[more]
A0A6J1GHI8	3.1e-21	74.68	uncharacterized protein LOC111454014 OS=Cucurbita moschata OX=3662 GN=LOC1114540...	[more]

BLAST of MS001134 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38465.1	1.3e-11	52.94	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 73..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001134.1	MS001134.1	mRNA