MS001037 (gene) Bitter gourd (TR) v1

Overview
NameMS001037
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold36: 1008882 .. 1009097 (-)
RNA-Seq ExpressionMS001037
SyntenyMS001037
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTTGAGCAACAACGTTATTGGAGGAAGAAGATTGGGAGTGGTAATGGAAATTAGCAGCAAAAGCTTGGTGGATTTTTCAACTTCTTCTTCCAGTGGTGACAAAAAGAAGAAGAAGATGAGGATAATTATTCCAAGGAAATTGATTAGCAGAGGGTCTGAATCAGTTTATAATGCTGATTATTTGACTCATATGCATCACCCTCCAAAACATAAC

mRNA sequence

ATTTTGAGCAACAACGTTATTGGAGGAAGAAGATTGGGAGTGGTAATGGAAATTAGCAGCAAAAGCTTGGTGGATTTTTCAACTTCTTCTTCCAGTGGTGACAAAAAGAAGAAGAAGATGAGGATAATTATTCCAAGGAAATTGATTAGCAGAGGGTCTGAATCAGTTTATAATGCTGATTATTTGACTCATATGCATCACCCTCCAAAACATAAC

Coding sequence (CDS)

ATTTTGAGCAACAACGTTATTGGAGGAAGAAGATTGGGAGTGGTAATGGAAATTAGCAGCAAAAGCTTGGTGGATTTTTCAACTTCTTCTTCCAGTGGTGACAAAAAGAAGAAGAAGATGAGGATAATTATTCCAAGGAAATTGATTAGCAGAGGGTCTGAATCAGTTTATAATGCTGATTATTTGACTCATATGCATCACCCTCCAAAACATAAC

Protein sequence

ILSNNVIGGRRLGVVMEISSKSLVDFSTSSSSGDKKKKKMRIIIPRKLISRGSESVYNADYLTHMHHPPKHN
Homology
BLAST of MS001037 vs. NCBI nr
Match: XP_022951917.1 (uncharacterized protein LOC111454657 [Cucurbita moschata])

HSP 1 Score: 58.5 bits (140), Expect = 2.7e-05
Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = 0

Query: 1   ILSNNVIGGRRL----GVVMEISSKSLVDFSTSSSSGDKKKKKMRIIIPRKLISRGSESV 60
           ++SNN+ G RRL    G+ +E S  S +  S+S +  + KKKK      +K +  GS  V
Sbjct: 47  LVSNNIGGRRRLEVKEGMPLERSKSSKMAVSSSFNGENGKKKK------KKKLGNGSSLV 106

Query: 61  Y-NADYLTHMHHPPKHN 73
           Y NADYLTHMHHPPKHN
Sbjct: 107 YENADYLTHMHHPPKHN 117

BLAST of MS001037 vs. NCBI nr
Match: KAG6585262.1 (hypothetical protein SDJN03_17995, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.8 bits (138), Expect = 4.6e-05
Identity = 37/77 (48.05%), Postives = 47/77 (61.04%), Query Frame = 0

Query: 1   ILSNNVIGGRRL----GVVMEISSKSLVDFSTSSSSGDKKKKKMRIIIPRKLISRGSESV 60
           ++SNN+ G RRL    G+ +E S  S +  S+S +  + KKKK       K +  GS  V
Sbjct: 32  LVSNNIGGRRRLEVKEGMPLESSKSSKMAVSSSFNGENGKKKK-------KKLGNGSSLV 91

Query: 61  Y-NADYLTHMHHPPKHN 73
           Y NADYLTHMHHPPKHN
Sbjct: 92  YENADYLTHMHHPPKHN 101

BLAST of MS001037 vs. NCBI nr
Match: KAG7020185.1 (hypothetical protein SDJN02_16868, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 57.8 bits (138), Expect = 4.6e-05
Identity = 37/77 (48.05%), Postives = 47/77 (61.04%), Query Frame = 0

Query: 1   ILSNNVIGGRRL----GVVMEISSKSLVDFSTSSSSGDKKKKKMRIIIPRKLISRGSESV 60
           ++SNN+ G RRL    G+ +E S  S +  S+S +  + KKKK       K +  GS  V
Sbjct: 47  LVSNNIGGRRRLEVKEGMPLESSKSSKMAVSSSFNGENGKKKK-------KKLGNGSSLV 106

Query: 61  Y-NADYLTHMHHPPKHN 73
           Y NADYLTHMHHPPKHN
Sbjct: 107 YENADYLTHMHHPPKHN 116

BLAST of MS001037 vs. NCBI nr
Match: XP_023002074.1 (uncharacterized protein LOC111496054 [Cucurbita maxima])

HSP 1 Score: 57.4 bits (137), Expect = 6.0e-05
Identity = 40/79 (50.63%), Postives = 46/79 (58.23%), Query Frame = 0

Query: 1   ILSNNVIGGRRL----GVVMEI--SSKSLVDFSTSSSSGDKKKKKMRIIIPRKLISRGSE 60
           +LSNN+ G RRL    G+ +E   SSK  V  S +  +G KKKKK            GS 
Sbjct: 47  LLSNNIGGRRRLEVQEGMPLESSKSSKMAVPSSFNGENGKKKKKKS---------GNGSS 106

Query: 61  SVY-NADYLTHMHHPPKHN 73
            VY NADYLTHMHHPPKHN
Sbjct: 107 LVYENADYLTHMHHPPKHN 116

BLAST of MS001037 vs. NCBI nr
Match: XP_031743130.1 (uncharacterized protein LOC105435861 isoform X1 [Cucumis sativus])

HSP 1 Score: 55.8 bits (133), Expect = 1.7e-04
Identity = 41/92 (44.57%), Postives = 53/92 (57.61%), Query Frame = 0

Query: 1   ILSNNVIGGRRLGVVMEI----SSKSL-----------VDFSTSSS--SGDKKKKKMRI- 60
           +L NN IGGRRLG   E     +SKS            + FS++S+  +G KK KK  + 
Sbjct: 44  LLRNNNIGGRRLGAAKEFMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVS 103

Query: 61  -IIPRKLISRGSESVY-NADYLTHMHHPPKHN 73
            +  +K+   GS  VY NADYLT+MHHPPKHN
Sbjct: 104 SLETKKMGISGSTVVYNNADYLTYMHHPPKHN 135

BLAST of MS001037 vs. ExPASy TrEMBL
Match: A0A6J1GIZ1 (uncharacterized protein LOC111454657 OS=Cucurbita moschata OX=3662 GN=LOC111454657 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.3e-05
Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = 0

Query: 1   ILSNNVIGGRRL----GVVMEISSKSLVDFSTSSSSGDKKKKKMRIIIPRKLISRGSESV 60
           ++SNN+ G RRL    G+ +E S  S +  S+S +  + KKKK      +K +  GS  V
Sbjct: 47  LVSNNIGGRRRLEVKEGMPLERSKSSKMAVSSSFNGENGKKKK------KKKLGNGSSLV 106

Query: 61  Y-NADYLTHMHHPPKHN 73
           Y NADYLTHMHHPPKHN
Sbjct: 107 YENADYLTHMHHPPKHN 117

BLAST of MS001037 vs. ExPASy TrEMBL
Match: A0A6J1KPF0 (uncharacterized protein LOC111496054 OS=Cucurbita maxima OX=3661 GN=LOC111496054 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.9e-05
Identity = 40/79 (50.63%), Postives = 46/79 (58.23%), Query Frame = 0

Query: 1   ILSNNVIGGRRL----GVVMEI--SSKSLVDFSTSSSSGDKKKKKMRIIIPRKLISRGSE 60
           +LSNN+ G RRL    G+ +E   SSK  V  S +  +G KKKKK            GS 
Sbjct: 47  LLSNNIGGRRRLEVQEGMPLESSKSSKMAVPSSFNGENGKKKKKKS---------GNGSS 106

Query: 61  SVY-NADYLTHMHHPPKHN 73
            VY NADYLTHMHHPPKHN
Sbjct: 107 LVYENADYLTHMHHPPKHN 116

BLAST of MS001037 vs. ExPASy TrEMBL
Match: A0A0A0KHA3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G401420 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.4e-05
Identity = 41/92 (44.57%), Postives = 53/92 (57.61%), Query Frame = 0

Query: 1  ILSNNVIGGRRLGVVMEI----SSKSL-----------VDFSTSSS--SGDKKKKKMRI- 60
          +L NN IGGRRLG   E     +SKS            + FS++S+  +G KK KK  + 
Sbjct: 3  LLRNNNIGGRRLGAAKEFMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVS 62

Query: 61 -IIPRKLISRGSESVY-NADYLTHMHHPPKHN 73
           +  +K+   GS  VY NADYLT+MHHPPKHN
Sbjct: 63 SLETKKMGISGSTVVYNNADYLTYMHHPPKHN 94

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022951917.12.7e-0548.05uncharacterized protein LOC111454657 [Cucurbita moschata][more]
KAG6585262.14.6e-0548.05hypothetical protein SDJN03_17995, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7020185.14.6e-0548.05hypothetical protein SDJN02_16868, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023002074.16.0e-0550.63uncharacterized protein LOC111496054 [Cucurbita maxima][more]
XP_031743130.11.7e-0444.57uncharacterized protein LOC105435861 isoform X1 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GIZ11.3e-0548.05uncharacterized protein LOC111454657 OS=Cucurbita moschata OX=3662 GN=LOC1114546... [more]
A0A6J1KPF02.9e-0550.63uncharacterized protein LOC111496054 OS=Cucurbita maxima OX=3661 GN=LOC111496054... [more]
A0A0A0KHA38.4e-0544.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G401420 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS001037.1MS001037.1mRNA