MS001028 (gene) Bitter gourd (TR) v1

Overview
NameMS001028
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold36: 938985 .. 939323 (-)
RNA-Seq ExpressionMS001028
SyntenyMS001028
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGGCAAGCTTGAGAATGGAAGATTTTGGTGCAGCTGAGTTTCCTGGCTTCCAAACCAATGGGGCACACAAAGATGACGTCGTCTATCGAAATCCTTTGATCACTCGGTTGCAGCATCGAGCCCCCCCCCCATCCTCTTTAGCTACACATCGTCCTACTGTCTCTACCTCTTCCCCCGGTTGGATCAGTGTACCAGAATCGAAATCGAAACAATCAGTTGATAGGGACTCTACTTCTTCTACACCTAATGTACATTTTGGTTATAGAGAATCCTTTTACATTCCATCAATGTTTGAATCTCGCTATGTTGTAGAGCAAAATATTACAAATAAACCAAGT

mRNA sequence

AAGGCAAGCTTGAGAATGGAAGATTTTGGTGCAGCTGAGTTTCCTGGCTTCCAAACCAATGGGGCACACAAAGATGACGTCGTCTATCGAAATCCTTTGATCACTCGGTTGCAGCATCGAGCCCCCCCCCCATCCTCTTTAGCTACACATCGTCCTACTGTCTCTACCTCTTCCCCCGGTTGGATCAGTGTACCAGAATCGAAATCGAAACAATCAGTTGATAGGGACTCTACTTCTTCTACACCTAATGTACATTTTGGTTATAGAGAATCCTTTTACATTCCATCAATGTTTGAATCTCGCTATGTTGTAGAGCAAAATATTACAAATAAACCAAGT

Coding sequence (CDS)

AAGGCAAGCTTGAGAATGGAAGATTTTGGTGCAGCTGAGTTTCCTGGCTTCCAAACCAATGGGGCACACAAAGATGACGTCGTCTATCGAAATCCTTTGATCACTCGGTTGCAGCATCGAGCCCCCCCCCCATCCTCTTTAGCTACACATCGTCCTACTGTCTCTACCTCTTCCCCCGGTTGGATCAGTGTACCAGAATCGAAATCGAAACAATCAGTTGATAGGGACTCTACTTCTTCTACACCTAATGTACATTTTGGTTATAGAGAATCCTTTTACATTCCATCAATGTTTGAATCTCGCTATGTTGTAGAGCAAAATATTACAAATAAACCAAGT

Protein sequence

KASLRMEDFGAAEFPGFQTNGAHKDDVVYRNPLITRLQHRAPPPSSLATHRPTVSTSSPGWISVPESKSKQSVDRDSTSSTPNVHFGYRESFYIPSMFESRYVVEQNITNKPS
Homology
BLAST of MS001028 vs. NCBI nr
Match: KAE8647257.1 (hypothetical protein Csa_018305, partial [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 5.7e-10
Identity = 58/127 (45.67%), Postives = 68/127 (53.54%), Query Frame = 0

Query: 1   KASLRMEDFG--AAEFPGFQTNGAHKDDVVYRNPLITRLQHRAPPPSSLATHRPTVSTSS 60
           KA   MEDFG  AAEFPGFQTN AH+DD+VYR  L TRLQ  AP P SL   RPT   S 
Sbjct: 10  KAWELMEDFGADAAEFPGFQTNVAHRDDIVYRRSL-TRLQRCAPHPLSLP--RPTSFPSC 69

Query: 61  PGWISVPESKSKQSVDRDSTSSTPNVHFGYRESFY------------IPSMFESRYVVEQ 114
            G    P    + + +  S SST N       SF+             PS+FES  V+E+
Sbjct: 70  GGASKQPPPLVENNNNCSSFSSTSN-----NASFHCIDPIPLLSPLVCPSLFESHCVIEK 128

BLAST of MS001028 vs. NCBI nr
Match: XP_015895207.1 (uncharacterized protein LOC107429071 [Ziziphus jujuba])

HSP 1 Score: 56.2 bits (134), Expect = 2.1e-04
Identity = 43/113 (38.05%), Postives = 61/113 (53.98%), Query Frame = 0

Query: 6   MEDFGAAEFPGFQTNGAHKDDVVYRNPLITRLQHRAPPPSSLATHRPTVSTSS--PGWIS 65
           ME+ G  +FPGFQT  AHKDD+V+R  L  RLQ RAP P  L   +P VS++S   G  S
Sbjct: 1   MEENGGEQFPGFQT-CAHKDDIVFRRCLSHRLQRRAPCP--LQVMKPNVSSASFHGGQKS 60

Query: 66  VPESKSKQSVDRDSTSSTPNVHFGYRES-------FYIPSMFESRYVVEQNIT 110
           +  S +  S    S+SS+    F + +          +PS+ ES  + ++N T
Sbjct: 61  LGTSGTNSSSSSSSSSSSSLNSFYHSKDPIPLLSPLVLPSLLESACIQQENAT 110

BLAST of MS001028 vs. ExPASy TrEMBL
Match: A0A0A0KDQ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G367140 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.7e-10
Identity = 58/127 (45.67%), Postives = 68/127 (53.54%), Query Frame = 0

Query: 1   KASLRMEDFG--AAEFPGFQTNGAHKDDVVYRNPLITRLQHRAPPPSSLATHRPTVSTSS 60
           KA   MEDFG  AAEFPGFQTN AH+DD+VYR  L TRLQ  AP P SL   RPT   S 
Sbjct: 10  KAWELMEDFGADAAEFPGFQTNVAHRDDIVYRRSL-TRLQRCAPHPLSLP--RPTSFPSC 69

Query: 61  PGWISVPESKSKQSVDRDSTSSTPNVHFGYRESFY------------IPSMFESRYVVEQ 114
            G    P    + + +  S SST N       SF+             PS+FES  V+E+
Sbjct: 70  GGASKQPPPLVENNNNCSSFSSTSN-----NASFHCIDPIPLLSPLVCPSLFESHCVIEK 128

BLAST of MS001028 vs. ExPASy TrEMBL
Match: A0A6P4AEF0 (uncharacterized protein LOC107429071 OS=Ziziphus jujuba OX=326968 GN=LOC107429071 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.0e-04
Identity = 43/113 (38.05%), Postives = 61/113 (53.98%), Query Frame = 0

Query: 6   MEDFGAAEFPGFQTNGAHKDDVVYRNPLITRLQHRAPPPSSLATHRPTVSTSS--PGWIS 65
           ME+ G  +FPGFQT  AHKDD+V+R  L  RLQ RAP P  L   +P VS++S   G  S
Sbjct: 1   MEENGGEQFPGFQT-CAHKDDIVFRRCLSHRLQRRAPCP--LQVMKPNVSSASFHGGQKS 60

Query: 66  VPESKSKQSVDRDSTSSTPNVHFGYRES-------FYIPSMFESRYVVEQNIT 110
           +  S +  S    S+SS+    F + +          +PS+ ES  + ++N T
Sbjct: 61  LGTSGTNSSSSSSSSSSSSLNSFYHSKDPIPLLSPLVLPSLLESACIQQENAT 110

BLAST of MS001028 vs. ExPASy TrEMBL
Match: A0A6A1V1J8 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR7G020458 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.0e-04
Identity = 43/110 (39.09%), Postives = 57/110 (51.82%), Query Frame = 0

Query: 6   MEDFGAAEFPGFQTNGAHKDDVVYRNPLITRLQHRAPPPSSLATHRPTVSTSSPGWISVP 65
           ME+  +AEFPGFQT   HKDD VYR+ L +RLQ RAP P  L        ++ P   + P
Sbjct: 1   MEEGCSAEFPGFQT-CVHKDDFVYRSSL-SRLQRRAPSPLQLIK-----PSTVPSACNGP 60

Query: 66  ESKSKQSVDRDSTSSTPNVHFGYRE------SFYIPSMFESRYVVEQNIT 110
                 S    S+SS+ N  +  ++         +PS+ ES YV E NIT
Sbjct: 61  PKTFVGSSSSSSSSSSMNPFYYSKDPIPLLSPLALPSLLESAYVQEGNIT 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8647257.15.7e-1045.67hypothetical protein Csa_018305, partial [Cucumis sativus][more]
XP_015895207.12.1e-0438.05uncharacterized protein LOC107429071 [Ziziphus jujuba][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KDQ22.7e-1045.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G367140 PE=4 SV=1[more]
A0A6P4AEF01.0e-0438.05uncharacterized protein LOC107429071 OS=Ziziphus jujuba OX=326968 GN=LOC10742907... [more]
A0A6A1V1J85.0e-0439.09Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR7G020458 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..82
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..82

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS001028.1MS001028.1mRNA