MS001023 (gene) Bitter gourd (TR) v1

Overview


Name	MS001023
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	MADS-box transcription factor 1
Location	scaffold36: 906631 .. 907672 (+)
RNA-Seq Expression	MS001023
Synteny	MS001023

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGAGGGAGAGTGGAGCTGAAGAAGATAGAGAACAAAATAAATCGACAGGTTACGTTCACCAAGAGGAGAAATGGGCTTCTTAAAAAGGCCTACGAGCTCTCAATTCTCTGCGATGCCGAAGTTGCCCTCATCATCTTCTCCACTCGCGGCAAACTCTACGAATTCTCCAGCTCCTCAAGGTCAACCCAACAAAACAAATTAAACCTTTTATTATTCTTATTTATTAGTATTTTTTGTATTTTATTTTAGTCGTCTCAGATTTTGATGGGGTTTTCGAGTTTGTTTTGCAGTATAGCCAAGACTTTGGAGAGGTATCAAAGCCACAGCTATGGCGCATTGGAACCCTCCCACCATCCCAAGGACACTCAGGTCATTTCCCTACCCCATCCACCCCCAAATTCATAGGGTTTAATTTGCCTCAATTATGTGTTTCTGTCGTGTCAAAAGTTTTACTTTAAATCTTAGGCATATCCATCTAACCCTAGTTAACACTTGTGTTAATTTATTGATTAAGTGGTAATTGGACTCTACTCCTTCATTTGAGGTCGAATGTTCAAATTCTAGCTCGTATCTACAATGTTTTTTTTTTTTTTTTTTGTTGATTATGAGAGAGATTCCAATTTTTGTCAATTAAAATTAAAGTTGTAGAGTTGAAATGATAGGACAACCAATTTTGTAATTTAGGAGCATTTTATACAACTTTATAAGTTTTCTTTTAGAAATATTAATTATTGGTTATTTTTTGAAGCAGAGATGGTACCAGGAGTATTTGAAGCTCAAAGCAGAAGTGGAATCCCTCCAGCATTCTCAGAGGTTTCTTCCTTTTTTTTCTTTTTTTTTTCTTTTTTTTTTGGGGTTAATTAGTGTTTGTAAATATATATAGACACATAATATCAAAATAAATATATTATTTGTGTTTTATAGGCGATTTCTTGGGGAGGAATTAGATGATCTGGAGGCCAAGGAACTTGACCAACTTGAGATCCAATTAGAAATGACTCTGAAGCAAATCAGGTCCGCAAAGGTATATATAAAT

mRNA sequence

ATGGGAAGAGGGAGAGTGGAGCTGAAGAAGATAGAGAACAAAATAAATCGACAGGTTACGTTCACCAAGAGGAGAAATGGGCTTCTTAAAAAGGCCTACGAGCTCTCAATTCTCTGCGATGCCGAAGTTGCCCTCATCATCTTCTCCACTCGCGGCAAACTCTACGAATTCTCCAGCTCCTCAAGTATAGCCAAGACTTTGGAGAGGTATCAAAGCCACAGCTATGGCGCATTGGAACCCTCCCACCATCCCAAGGACACTCAGAGATGGTACCAGGAGTATTTGAAGCTCAAAGCAGAAGTGGAATCCCTCCAGCATTCTCAGAGGCGATTTCTTGGGGAGGAATTAGATGATCTGGAGGCCAAGGAACTTGACCAACTTGAGATCCAATTAGAAATGACTCTGAAGCAAATCAGGTCCGCAAAGGTATATATAAAT

Coding sequence (CDS)

ATGGGAAGAGGGAGAGTGGAGCTGAAGAAGATAGAGAACAAAATAAATCGACAGGTTACGTTCACCAAGAGGAGAAATGGGCTTCTTAAAAAGGCCTACGAGCTCTCAATTCTCTGCGATGCCGAAGTTGCCCTCATCATCTTCTCCACTCGCGGCAAACTCTACGAATTCTCCAGCTCCTCAAGTATAGCCAAGACTTTGGAGAGGTATCAAAGCCACAGCTATGGCGCATTGGAACCCTCCCACCATCCCAAGGACACTCAGAGATGGTACCAGGAGTATTTGAAGCTCAAAGCAGAAGTGGAATCCCTCCAGCATTCTCAGAGGCGATTTCTTGGGGAGGAATTAGATGATCTGGAGGCCAAGGAACTTGACCAACTTGAGATCCAATTAGAAATGACTCTGAAGCAAATCAGGTCCGCAAAGGTATATATAAAT

Protein sequence

MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSSSSIAKTLERYQSHSYGALEPSHHPKDTQRWYQEYLKLKAEVESLQHSQRRFLGEELDDLEAKELDQLEIQLEMTLKQIRSAKVYIN

Homology

[Close]

BLAST of MS001023 vs. NCBI nr
Match: XP_022131973.1 (truncated transcription factor CAULIFLOWER A [Momordica charantia])

HSP 1 Score: 265.4 bits (677), Expect = 2.9e-67
Identity = 139/142 (97.89%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSS 60
           MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSS
Sbjct: 1   MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSS 60

Query: 61  SSIAKTLERYQSHSYGALEPSHHPKDTQRWYQEYLKLKAEVESLQHSQRRFLGEELDDLE 120
           SSIAKTLERYQ HSYGALEPSHHPKDTQRWYQEYLKLKAEVESLQHSQRRFLGEELDDLE
Sbjct: 61  SSIAKTLERYQRHSYGALEPSHHPKDTQRWYQEYLKLKAEVESLQHSQRRFLGEELDDLE 120

Query: 121 AKELDQLEIQLEMTLKQIRSAK 143
            KELDQLEIQLEM+LKQIRSAK
Sbjct: 121 TKELDQLEIQLEMSLKQIRSAK 142

[Close]

BLAST of MS001023 vs. NCBI nr
Match: XP_038886104.1 (MADS-box protein CMB1 [Benincasa hispida])

HSP 1 Score: 250.8 bits (639), Expect = 7.5e-63
Identity = 132/142 (92.96%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 1   MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSS 60
           MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSS
Sbjct: 1   MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSS 60

Query: 61  SSIAKTLERYQSHSYGALEPSHHPKDTQRWYQEYLKLKAEVESLQHSQRRFLGEELDDLE 120
           SSIAKTLERY+ HSYGALE SH PKDT+RWYQEYLKLKAEVE LQ+SQRRFLGEELDDLE
Sbjct: 61  SSIAKTLERYERHSYGALEASHPPKDTERWYQEYLKLKAEVEGLQYSQRRFLGEELDDLE 120

Query: 121 AKELDQLEIQLEMTLKQIRSAK 143
            KELDQLEIQLEM+LKQIRS K
Sbjct: 121 TKELDQLEIQLEMSLKQIRSTK 142

[Close]

BLAST of MS001023 vs. NCBI nr
Match: XP_016899976.1 (PREDICTED: MADS-box protein CMB1 [Cucumis melo])

HSP 1 Score: 247.7 bits (631), Expect = 6.3e-62
Identity = 129/142 (90.85%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 1   MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSS 60
           MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALI+FS RGKLYEFSSS
Sbjct: 1   MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSARGKLYEFSSS 60

Query: 61  SSIAKTLERYQSHSYGALEPSHHPKDTQRWYQEYLKLKAEVESLQHSQRRFLGEELDDLE 120
           SSI KTLERY+ HSYGALE SH PKDT+RWYQEYLKLKAEVE+LQ+SQRRFLGEELDDLE
Sbjct: 61  SSIGKTLERYERHSYGALEASHPPKDTERWYQEYLKLKAEVEALQYSQRRFLGEELDDLE 120

Query: 121 AKELDQLEIQLEMTLKQIRSAK 143
           +KELDQLEIQLEM+LKQIRS K
Sbjct: 121 SKELDQLEIQLEMSLKQIRSTK 142

[Close]

BLAST of MS001023 vs. NCBI nr
Match: XP_031742478.1 (MADS-box protein CMB1 isoform X2 [Cucumis sativus])

HSP 1 Score: 243.4 bits (620), Expect = 1.2e-60
Identity = 129/143 (90.21%), Postives = 135/143 (94.41%), Query Frame = 0


Query: 1   MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSS 60
           MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFS RGKLYEFSSS
Sbjct: 1   MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSARGKLYEFSSS 60

Query: 61  SSIAKTLERYQSHSYGALEPSHHPKDTQRWYQEYLKLKAEVESLQHSQRRFLGEELDDLE 120
            SIAKTLERY+ HSYGALE S  PKDT+RWYQEYLKLKAEVE+LQ+SQRRFLGEELDDLE
Sbjct: 61  PSIAKTLERYERHSYGALEASLPPKDTERWYQEYLKLKAEVEALQYSQRRFLGEELDDLE 120

Query: 121 AKELDQLEIQLEMTLKQIRSAKV 144
            KELDQLEIQLEM+LKQIRS K+
Sbjct: 121 TKELDQLEIQLEMSLKQIRSTKL 143

[Close]

BLAST of MS001023 vs. NCBI nr
Match: XP_031742477.1 (MADS-box protein CMB1 isoform X1 [Cucumis sativus] >KAE8647255.1 hypothetical protein Csa_018268 [Cucumis sativus])

HSP 1 Score: 243.0 bits (619), Expect = 1.6e-60
Identity = 129/142 (90.85%), Postives = 134/142 (94.37%), Query Frame = 0


Query: 1   MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSS 60
           MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFS RGKLYEFSSS
Sbjct: 1   MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSARGKLYEFSSS 60

Query: 61  SSIAKTLERYQSHSYGALEPSHHPKDTQRWYQEYLKLKAEVESLQHSQRRFLGEELDDLE 120
            SIAKTLERY+ HSYGALE S  PKDT+RWYQEYLKLKAEVE+LQ+SQRRFLGEELDDLE
Sbjct: 61  PSIAKTLERYERHSYGALEASLPPKDTERWYQEYLKLKAEVEALQYSQRRFLGEELDDLE 120

Query: 121 AKELDQLEIQLEMTLKQIRSAK 143
            KELDQLEIQLEM+LKQIRS K
Sbjct: 121 TKELDQLEIQLEMSLKQIRSTK 142

[Close]

BLAST of MS001023 vs. ExPASy Swiss-Prot
Match: Q8LLR2 (Agamous-like MADS-box protein MADS2 OS=Vitis vinifera OX=29760 GN=MADS2 PE=2 SV=2)

HSP 1 Score: 190.7 bits (483), Expect = 1.2e-47
Identity = 106/143 (74.13%), Postives = 119/143 (83.22%), Query Frame = 0


Query: 1   MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSS 60
           MGRGRVELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAEVALIIFSTRGKLYEF SS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSS 60

Query: 61  SSIAKTLERYQSHSYGALEPSHHPKD-TQRWYQEYLKLKAEVESLQHSQRRFLGEELDDL 120
           SS+ KTLERYQ  SYGA+E S   K+  Q  Y+EYLKLK++ ESLQ +QR  LGE+L  L
Sbjct: 61  SSMLKTLERYQKCSYGAVEVSRPSKELEQSSYREYLKLKSKFESLQRTQRNLLGEDLGPL 120

Query: 121 EAKELDQLEIQLEMTLKQIRSAK 143
             KEL+QLE QLE +LKQ+RS K
Sbjct: 121 NTKELEQLERQLETSLKQVRSTK 143

[Close]

BLAST of MS001023 vs. ExPASy Swiss-Prot
Match: Q39685 (MADS-box protein CMB1 OS=Dianthus caryophyllus OX=3570 GN=CMB1 PE=2 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.0e-47
Identity = 102/142 (71.83%), Postives = 118/142 (83.10%), Query Frame = 0


Query: 1   MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSS 60
           MGRGRVELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAEVALI+FS RGKLYEF S+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCST 60

Query: 61  SSIAKTLERYQSHSYGALEPSHHPKDTQRWYQEYLKLKAEVESLQHSQRRFLGEELDDLE 120
           S + KTLERYQ  SYG+LE S   K+T+  YQEYLKLKA+V+ LQ S R  LGE+L +L 
Sbjct: 61  SCMNKTLERYQRCSYGSLETSQPSKETESSYQEYLKLKAKVDVLQRSHRNLLGEDLGELS 120

Query: 121 AKELDQLEIQLEMTLKQIRSAK 143
            KEL+QLE QL+ +L+QIRS K
Sbjct: 121 TKELEQLEHQLDKSLRQIRSIK 142

[Close]

BLAST of MS001023 vs. ExPASy Swiss-Prot
Match: Q7Y040 (MADS-box protein EJ2 OS=Solanum lycopersicum OX=4081 GN=EJ2 PE=1 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.0e-47
Identity = 103/142 (72.54%), Postives = 116/142 (81.69%), Query Frame = 0


Query: 1   MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSS 60
           MGRGRVELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAEVALIIFS RGKLYEF S+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60

Query: 61  SSIAKTLERYQSHSYGALEPSHHPKDTQRWYQEYLKLKAEVESLQHSQRRFLGEELDDLE 120
           SS+ KT+E+YQ  SY  LE +    DTQ  Y EYL+LKA VE LQ SQR FLGE+L  L 
Sbjct: 61  SSMVKTIEKYQRCSYATLEANQSVTDTQNNYHEYLRLKARVELLQRSQRNFLGEDLGTLS 120

Query: 121 AKELDQLEIQLEMTLKQIRSAK 143
           +K+L+QLE QLE +LKQIRS K
Sbjct: 121 SKDLEQLENQLESSLKQIRSRK 142

[Close]

BLAST of MS001023 vs. ExPASy Swiss-Prot
Match: K4DEK0 (MADS-box protein J2 OS=Solanum lycopersicum OX=4081 GN=J2 PE=1 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 3.9e-46
Identity = 101/142 (71.13%), Postives = 117/142 (82.39%), Query Frame = 0


Query: 1   MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSS 60
           MGRGRVELK+IENKINRQVTF KRRNGLLKKAYELSILCDAEVALIIFS+RGKLYEFSS+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSSRGKLYEFSSA 60

Query: 61  SSIAKTLERYQSHSYGALEPSHHPKDTQRWYQEYLKLKAEVESLQHSQRRFLGEELDDLE 120
           SS+  TLE+YQ  SY +L+P     DTQ  Y EY++LKA VE LQ SQR  LGE+L  L 
Sbjct: 61  SSMMTTLEKYQQCSYASLDPMLPVSDTQMNYNEYVRLKARVELLQRSQRHILGEDLGTLN 120

Query: 121 AKELDQLEIQLEMTLKQIRSAK 143
           +KEL+QLE QL+ +LK++RS K
Sbjct: 121 SKELEQLEHQLDASLKKVRSKK 142

[Close]

BLAST of MS001023 vs. ExPASy Swiss-Prot
Match: P29383 (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana OX=3702 GN=AGL3 PE=1 SV=2)

HSP 1 Score: 183.7 bits (465), Expect = 1.5e-45
Identity = 94/143 (65.73%), Postives = 118/143 (82.52%), Query Frame = 0


Query: 1   MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEF-SS 60
           MGRG+VELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAE+AL+IFS RGKLYEF SS
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61  SSSIAKTLERYQSHSYGALEPSHHPKDTQRWYQEYLKLKAEVESLQHSQRRFLGEELDDL 120
            S +A+T+++Y+ HSY  ++P+   KD Q  YQ+YLKLK+ VE LQHSQR  LGEEL ++
Sbjct: 61  PSGMARTVDKYRKHSYATMDPNQSAKDLQDKYQDYLKLKSRVEILQHSQRHLLGEELSEM 120

Query: 121 EAKELDQLEIQLEMTLKQIRSAK 143
           +  EL+ LE Q++ +L+QIRS K
Sbjct: 121 DVNELEHLERQVDASLRQIRSTK 143

[Close]

BLAST of MS001023 vs. ExPASy TrEMBL
Match: A0A6J1BUY9 (truncated transcription factor CAULIFLOWER A OS=Momordica charantia OX=3673 GN=LOC111004957 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.4e-67
Identity = 139/142 (97.89%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSS 60
           MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSS
Sbjct: 1   MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSS 60

Query: 61  SSIAKTLERYQSHSYGALEPSHHPKDTQRWYQEYLKLKAEVESLQHSQRRFLGEELDDLE 120
           SSIAKTLERYQ HSYGALEPSHHPKDTQRWYQEYLKLKAEVESLQHSQRRFLGEELDDLE
Sbjct: 61  SSIAKTLERYQRHSYGALEPSHHPKDTQRWYQEYLKLKAEVESLQHSQRRFLGEELDDLE 120

Query: 121 AKELDQLEIQLEMTLKQIRSAK 143
            KELDQLEIQLEM+LKQIRSAK
Sbjct: 121 TKELDQLEIQLEMSLKQIRSAK 142

[Close]

BLAST of MS001023 vs. ExPASy TrEMBL
Match: A0A1S4DVG4 (MADS-box protein CMB1 OS=Cucumis melo OX=3656 GN=LOC103488456 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 3.1e-62
Identity = 129/142 (90.85%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 1   MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSS 60
           MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALI+FS RGKLYEFSSS
Sbjct: 1   MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSARGKLYEFSSS 60

Query: 61  SSIAKTLERYQSHSYGALEPSHHPKDTQRWYQEYLKLKAEVESLQHSQRRFLGEELDDLE 120
           SSI KTLERY+ HSYGALE SH PKDT+RWYQEYLKLKAEVE+LQ+SQRRFLGEELDDLE
Sbjct: 61  SSIGKTLERYERHSYGALEASHPPKDTERWYQEYLKLKAEVEALQYSQRRFLGEELDDLE 120

Query: 121 AKELDQLEIQLEMTLKQIRSAK 143
           +KELDQLEIQLEM+LKQIRS K
Sbjct: 121 SKELDQLEIQLEMSLKQIRSTK 142

[Close]

BLAST of MS001023 vs. ExPASy TrEMBL
Match: A0A6J1KSQ8 (truncated transcription factor CAULIFLOWER A OS=Cucurbita maxima OX=3661 GN=LOC111496099 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 3.2e-59
Identity = 124/142 (87.32%), Postives = 132/142 (92.96%), Query Frame = 0


Query: 1   MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSS 60
           MGRG+VELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALI+FST GKLYEFSSS
Sbjct: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60

Query: 61  SSIAKTLERYQSHSYGALEPSHHPKDTQRWYQEYLKLKAEVESLQHSQRRFLGEELDDLE 120
           SSIAKTLERYQ HSYGAL  SHH KDT++WY+EYLKLKAEVE LQHSQR+ LGEEL+DLE
Sbjct: 61  SSIAKTLERYQRHSYGALAASHHLKDTEKWYEEYLKLKAEVEGLQHSQRQILGEELEDLE 120

Query: 121 AKELDQLEIQLEMTLKQIRSAK 143
            KELDQLEIQLEM+LKQIR  K
Sbjct: 121 TKELDQLEIQLEMSLKQIRFTK 142

[Close]

BLAST of MS001023 vs. ExPASy TrEMBL
Match: A0A6J1GJJ3 (truncated transcription factor CAULIFLOWER A OS=Cucurbita moschata OX=3662 GN=LOC111454432 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 2.0e-58
Identity = 123/142 (86.62%), Postives = 130/142 (91.55%), Query Frame = 0


Query: 1   MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSS 60
           MGRG+VELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALI+FST GKLYEFSSS
Sbjct: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60

Query: 61  SSIAKTLERYQSHSYGALEPSHHPKDTQRWYQEYLKLKAEVESLQHSQRRFLGEELDDLE 120
           SSIAKTLERYQ HSYGAL  SHH KDT++WY+EYLKLK EVE LQHSQRR LGEEL+DLE
Sbjct: 61  SSIAKTLERYQRHSYGALAASHHLKDTEKWYEEYLKLKEEVEGLQHSQRRILGEELEDLE 120

Query: 121 AKELDQLEIQLEMTLKQIRSAK 143
            KELDQLEIQLE +LKQIR  K
Sbjct: 121 TKELDQLEIQLETSLKQIRFTK 142

[Close]

BLAST of MS001023 vs. ExPASy TrEMBL
Match: A0A0X8DAK9 (SEPALLATA-like protein OS=Platanus acerifolia OX=140101 GN=SEP1.3 PE=2 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 6.0e-50
Identity = 112/145 (77.24%), Postives = 122/145 (84.14%), Query Frame = 0


Query: 1   MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSS 60
           MGRGRVELK+IENK+NRQVTF KRRNGLLKKAYELS+LCDAEVALIIFS RGKLYEFSSS
Sbjct: 1   MGRGRVELKRIENKMNRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSS 60

Query: 61  SSIAKTLERYQSHSYGALEPSHHPKDTQRWYQEYLKLKAEVESLQHSQRRFLGEELDDLE 120
           SS+ KTLERYQ  SYG LE S  PK+TQ  YQEYLKLKA VE LQ SQR FLGE+L  L 
Sbjct: 61  SSMLKTLERYQKCSYGTLEVSQPPKETQNSYQEYLKLKARVEVLQRSQRNFLGEDLGPLN 120

Query: 121 AKELDQLEIQLEMTLKQIRSAKVYI 146
            KEL+QLE QLEM+LK+IRS K  +
Sbjct: 121 TKELEQLEHQLEMSLKEIRSTKTQL 145

[Close]

BLAST of MS001023 vs. TAIR 10
Match: AT2G03710.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 183.7 bits (465), Expect = 1.0e-46
Identity = 94/143 (65.73%), Postives = 118/143 (82.52%), Query Frame = 0


Query: 1   MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEF-SS 60
           MGRG+VELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAE+AL+IFS RGKLYEF SS
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61  SSSIAKTLERYQSHSYGALEPSHHPKDTQRWYQEYLKLKAEVESLQHSQRRFLGEELDDL 120
            S +A+T+++Y+ HSY  ++P+   KD Q  YQ+YLKLK+ VE LQHSQR  LGEEL ++
Sbjct: 61  PSGMARTVDKYRKHSYATMDPNQSAKDLQDKYQDYLKLKSRVEILQHSQRHLLGEELSEM 120

Query: 121 EAKELDQLEIQLEMTLKQIRSAK 143
           +  EL+ LE Q++ +L+QIRS K
Sbjct: 121 DVNELEHLERQVDASLRQIRSTK 143

[Close]

BLAST of MS001023 vs. TAIR 10
Match: AT2G03710.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 183.7 bits (465), Expect = 1.0e-46
Identity = 94/143 (65.73%), Postives = 118/143 (82.52%), Query Frame = 0


Query: 1   MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEF-SS 60
           MGRG+VELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAE+AL+IFS RGKLYEF SS
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61  SSSIAKTLERYQSHSYGALEPSHHPKDTQRWYQEYLKLKAEVESLQHSQRRFLGEELDDL 120
            S +A+T+++Y+ HSY  ++P+   KD Q  YQ+YLKLK+ VE LQHSQR  LGEEL ++
Sbjct: 61  PSGMARTVDKYRKHSYATMDPNQSAKDLQDKYQDYLKLKSRVEILQHSQRHLLGEELSEM 120

Query: 121 EAKELDQLEIQLEMTLKQIRSAK 143
           +  EL+ LE Q++ +L+QIRS K
Sbjct: 121 DVNELEHLERQVDASLRQIRSTK 143

[Close]

BLAST of MS001023 vs. TAIR 10
Match: AT2G03710.3 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 183.7 bits (465), Expect = 1.0e-46
Identity = 94/143 (65.73%), Postives = 118/143 (82.52%), Query Frame = 0


Query: 1   MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEF-SS 60
           MGRG+VELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAE+AL+IFS RGKLYEF SS
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61  SSSIAKTLERYQSHSYGALEPSHHPKDTQRWYQEYLKLKAEVESLQHSQRRFLGEELDDL 120
            S +A+T+++Y+ HSY  ++P+   KD Q  YQ+YLKLK+ VE LQHSQR  LGEEL ++
Sbjct: 61  PSGMARTVDKYRKHSYATMDPNQSAKDLQDKYQDYLKLKSRVEILQHSQRHLLGEELSEM 120

Query: 121 EAKELDQLEIQLEMTLKQIRSAK 143
           +  EL+ LE Q++ +L+QIRS K
Sbjct: 121 DVNELEHLERQVDASLRQIRSTK 143

[Close]

BLAST of MS001023 vs. TAIR 10
Match: AT5G15800.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 183.3 bits (464), Expect = 1.4e-46
Identity = 99/143 (69.23%), Postives = 118/143 (82.52%), Query Frame = 0


Query: 1   MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSS 60
           MGRGRVELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAEVALIIFS RGKLYEF SS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SSIAKTLERYQSHSYGALEPSHHP-KDTQRWYQEYLKLKAEVESLQHSQRRFLGEELDDL 120
           S++ KTL+RYQ  SYG++E ++ P K+ +  Y+EYLKLK   E+LQ  QR  LGE+L  L
Sbjct: 61  SNMLKTLDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPL 120

Query: 121 EAKELDQLEIQLEMTLKQIRSAK 143
            +KEL+QLE QL+ +LKQ+RS K
Sbjct: 121 NSKELEQLERQLDGSLKQVRSIK 143

[Close]

BLAST of MS001023 vs. TAIR 10
Match: AT5G15800.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 183.3 bits (464), Expect = 1.4e-46
Identity = 99/143 (69.23%), Postives = 118/143 (82.52%), Query Frame = 0


Query: 1   MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSS 60
           MGRGRVELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAEVALIIFS RGKLYEF SS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SSIAKTLERYQSHSYGALEPSHHP-KDTQRWYQEYLKLKAEVESLQHSQRRFLGEELDDL 120
           S++ KTL+RYQ  SYG++E ++ P K+ +  Y+EYLKLK   E+LQ  QR  LGE+L  L
Sbjct: 61  SNMLKTLDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPL 120

Query: 121 EAKELDQLEIQLEMTLKQIRSAK 143
            +KEL+QLE QL+ +LKQ+RS K
Sbjct: 121 NSKELEQLERQLDGSLKQVRSIK 143

The following BLAST results are available for this feature:

BLAST of MS001023 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131973.1	2.9e-67	97.89	truncated transcription factor CAULIFLOWER A [Momordica charantia]	[more]
XP_038886104.1	7.5e-63	92.96	MADS-box protein CMB1 [Benincasa hispida]	[more]
XP_016899976.1	6.3e-62	90.85	PREDICTED: MADS-box protein CMB1 [Cucumis melo]	[more]
XP_031742478.1	1.2e-60	90.21	MADS-box protein CMB1 isoform X2 [Cucumis sativus]	[more]
XP_031742477.1	1.6e-60	90.85	MADS-box protein CMB1 isoform X1 [Cucumis sativus] >KAE8647255.1 hypothetical pr...	[more]

BLAST of MS001023 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LLR2	1.2e-47	74.13	Agamous-like MADS-box protein MADS2 OS=Vitis vinifera OX=29760 GN=MADS2 PE=2 SV=...	[more]
Q39685	2.0e-47	71.83	MADS-box protein CMB1 OS=Dianthus caryophyllus OX=3570 GN=CMB1 PE=2 SV=1	[more]
Q7Y040	2.0e-47	72.54	MADS-box protein EJ2 OS=Solanum lycopersicum OX=4081 GN=EJ2 PE=1 SV=1	[more]
K4DEK0	3.9e-46	71.13	MADS-box protein J2 OS=Solanum lycopersicum OX=4081 GN=J2 PE=1 SV=1	[more]
P29383	1.5e-45	65.73	Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana OX=3702 GN=AGL3 PE=1 ...	[more]

BLAST of MS001023 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BUY9	1.4e-67	97.89	truncated transcription factor CAULIFLOWER A OS=Momordica charantia OX=3673 GN=L...	[more]
A0A1S4DVG4	3.1e-62	90.85	MADS-box protein CMB1 OS=Cucumis melo OX=3656 GN=LOC103488456 PE=4 SV=1	[more]
A0A6J1KSQ8	3.2e-59	87.32	truncated transcription factor CAULIFLOWER A OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1GJJ3	2.0e-58	86.62	truncated transcription factor CAULIFLOWER A OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A0X8DAK9	6.0e-50	77.24	SEPALLATA-like protein OS=Platanus acerifolia OX=140101 GN=SEP1.3 PE=2 SV=1	[more]

BLAST of MS001023 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G03710.1	1.0e-46	65.73	K-box region and MADS-box transcription factor family protein	[more]
AT2G03710.2	1.0e-46	65.73	K-box region and MADS-box transcription factor family protein	[more]
AT2G03710.3	1.0e-46	65.73	K-box region and MADS-box transcription factor family protein	[more]
AT5G15800.1	1.4e-46	69.23	K-box region and MADS-box transcription factor family protein	[more]
AT5G15800.2	1.4e-46	69.23	K-box region and MADS-box transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 3..23 score: 64.95 coord: 38..59 score: 67.48 coord: 23..38 score: 81.18
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 e-value: 5.2E-40 score: 148.9
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 10..57 e-value: 1.2E-26 score: 91.9
IPR002100	Transcription factor, MADS-box	PROSITE	PS00350	MADS_BOX_1	coord: 3..57
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..61 score: 33.332996
IPR002487	Transcription factor, K-box	PFAM	PF01486	K-box	coord: 85..142 e-value: 2.6E-19 score: 69.2
IPR002487	Transcription factor, K-box	PROSITE	PS51297	K_BOX	coord: 87..146 score: 10.968463
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 13..82 e-value: 2.5E-28 score: 99.7
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 2..88
None	No IPR available	PANTHER	PTHR48019:SF87	DEVELOPMENTAL PROTEIN SEPALLATA 1	coord: 1..143
None	No IPR available	PANTHER	PTHR48019	SERUM RESPONSE FACTOR HOMOLOG	coord: 1..143
IPR033896	MADS MEF2-like	CDD	cd00265	MADS_MEF2_like	coord: 2..78 e-value: 1.21725E-42 score: 133.832

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001023.1	MS001023.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding