MS000984 (gene) Bitter gourd (TR) v1

Overview


Name	MS000984
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Transcription and mRNA export factor ENY2
Location	scaffold36: 630414 .. 632893 (+)
RNA-Seq Expression	MS000984
Synteny	MS000984

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGAGGGCTTCCATTAATCGACCTCCGACGCCCGAAGCCGAGGATGATCGAGATCAGCAGCTTACTTTTCAAGAAACAATCAATATCAAGGTCTGCATTTTTCCTCGGTGTGTTCGTTTTCTGTAGGACCTTGATTGAATTCCTTGTTTCTCTGTGCATAGCTGATTGAAAGTGGCGAAAAAGAGCGGCTCAAAGAGCTCTTGAGAGACAGGCTTATCGAATGCGGATGGAAAGATGAAATGAAAGCCCTTTGCAGGTTTCCTCCATTCACTCTTTTTCGTGTTAGCAATTTAACATGTTGTTCCGCACTTCATAACTCATATGTGTGATCATTTCTGTGCTGCTGTTCCATCGTTAAGGGTGATAGTATATTTTCAGTTTAGGTACAAATAAGTACGTCTATTAATCGTTAATTAACGAGAAATTATTGAAAGGAAAGTTCCAGTATGCCCATTTCTTGTCAGTAGAGCTGGTGATATTTGAAATGATGTCCTAAAAATCTGGACGAGTAAGGCAGTTCATGGCTTGATGGGTGAAGACAGGTCTAAGATTAATTAAAATGGCCATTTGAACTGAACTAATTCAAGTTTTGTGTGATTTAAGATTCTTTGCAGGTCTTTTACTAGCTCTTCAATTGGACCGACTTATGCTCATTTTAAGTCTTTCATTTCTTGAGGCTCAGATTTCTCTCTCCCTATTGTTTCTCCAGGGCATATGTAAGGAAGAAGGGAAGGAACAATGTCAGTGTCGACGACCTTGTGCAGGTCATTACTCCGAAAGGCAGAGGTTGGTTTTCACTTCCCATTTTAGAAGTGGTTGCTATCAGTAACATTTATCATAATTATCGCAATAATTTTTTTTTTTATAAATCGACCTGAAAAAAAAAAATTGTATTTTTTGTCTAACAAATTAAATAAGGTATAATGCAGCAGACAATTCTAGGCTTATGGCATTGCAATTTGCAATAAGTCCCCTCACATTTCTTATTAAATTATCAGCTTCTTGAACCAATAAACTGCTCATTCTGGAAGTTGTGGTTTTGGTACATTACACTACCCCCTCTACATGGAAAGAAAAACGATATTTCATTCTACTGCAAATACTACACATGATCATTCGACTTCTAACACTAACCACCAGTTCTCCACATTTGATCACCTTTTCTTTTATGGTTTAAATTGTGTACGATCCAATATGTATATTGTTATATCGAGTGCGTGAAATCATGAAGATTGTGAGAACCCAGTTCTTTTGGTGATCACGGTGGTCATTCTTGCTGTTTGTTATCTTTTTATTTCTTGTGTGGTTAAAGAAAAGAGACGAGACTTCAGATGAGGATTCTACATATGCTTTATGCTGATAAGTGCAAGAGTTACAATCAGATGTTTAATGTTTAATTTGCACCCGTATATTTTCAATAAATAAATTATGATAGCTTTCTGATAGCCACTAGTGATTTAGATACTACTGTGAATAAACTGTGTGGTCATTCTGGCTCACGAGCAGAAAGGATCCTTGAGATGATACCTTCTAAAAATTACCAAACATAATCAAGAAAACTCCATATTTATGTATCCTATAAAGGCTCCAAAGTTAAATCCTTTCATGATATAGCATGAGGTTAAACAAACTTCCCCTTCATATAAACCCGACTTCATGTGCTCGCCACATTAATTGAACACTTTTACCCCACATGCTCAAAGGTAAGAGACGAGTCCTTTTGTACTAGGAGATCATAGTGTTATCAACCTCATGAAAAGTCAACAACCATAGGAGAACCTTTACCTTTGAAGATTTGCTTCAAACCAAATCAAATTTCAAGTAGTAAAATCACAGGTATACACAAAAATTTGGCCCTGAACAAGTAGACCAATAATAATGCCTGTCTTTTAAGTTACAGAGGTAAATTCCTGTTGGAGAGTAGTTAAAGCAATATTTATTCAAATTTGAAAATATGAGCCAATAATAATTAAGAAGGCACTTACCTTAACACCTAATGAAGTTTGATTTACACACCATTTCCAAGAACCAGCTTTTAACAGAAAGAAGAGTCATCAAGGGGGTTTTTCTATTGATTTTCATGGAGGAGAATTCCACCCATTATCTTGCATCCCATACATGTTTTCAAACTGTACCTAGGGCAACCTCCAGAGGAGATCTCCATAACCATATGCCCATTAAACCTCCATAAGTTCCGGTTGATTTCGTGTTATTAACGTTTAGAAGTATTTCCTATGAAAGTGAATTGCATATTGTGTTAAAAACGTATTCACAGTAATATTATTTGTCTTGCAGTACTCTGATTTGATTACATGTGTACCTTTTATTATCCTCCTATTTCATCTAAGTGTTCTTCTGGTTCTTCTTGCTAAATTCACCGTTGACTCTGGTTCAAATGATGTTATGTAGCCTCAGTTCCCGATTCAGTGAAAGCTGAGCTGCTGCAGCGGATCCGATCTTTCCTAGGATCAACAGCCATC

mRNA sequence

AGGAGGGCTTCCATTAATCGACCTCCGACGCCCGAAGCCGAGGATGATCGAGATCAGCAGCTTACTTTTCAAGAAACAATCAATATCAAGCTGATTGAAAGTGGCGAAAAAGAGCGGCTCAAAGAGCTCTTGAGAGACAGGCTTATCGAATGCGGATGGAAAGATGAAATGAAAGCCCTTTGCAGGGCATATGTAAGGAAGAAGGGAAGGAACAATGTCAGTGTCGACGACCTTGTGCAGGTCATTACTCCGAAAGGCAGAGCCTCAGTTCCCGATTCAGTGAAAGCTGAGCTGCTGCAGCGGATCCGATCTTTCCTAGGATCAACAGCCATC

Coding sequence (CDS)

AGGAGGGCTTCCATTAATCGACCTCCGACGCCCGAAGCCGAGGATGATCGAGATCAGCAGCTTACTTTTCAAGAAACAATCAATATCAAGCTGATTGAAAGTGGCGAAAAAGAGCGGCTCAAAGAGCTCTTGAGAGACAGGCTTATCGAATGCGGATGGAAAGATGAAATGAAAGCCCTTTGCAGGGCATATGTAAGGAAGAAGGGAAGGAACAATGTCAGTGTCGACGACCTTGTGCAGGTCATTACTCCGAAAGGCAGAGCCTCAGTTCCCGATTCAGTGAAAGCTGAGCTGCTGCAGCGGATCCGATCTTTCCTAGGATCAACAGCCATC

Protein sequence

RRASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLGSTAI

Homology

[Close]

BLAST of MS000984 vs. NCBI nr
Match: XP_022131273.1 (transcription and mRNA export factor SUS1 [Momordica charantia])

HSP 1 Score: 214.5 bits (545), Expect = 4.5e-52
Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 2   RASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALC 61
           RASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLR+RLIECGWKDEMKALC
Sbjct: 2   RASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLRERLIECGWKDEMKALC 61

Query: 62  RAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLGSTAI 112
           RAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLGSTAI
Sbjct: 62  RAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLGSTAI 111

[Close]

BLAST of MS000984 vs. NCBI nr
Match: XP_011657386.1 (transcription and mRNA export factor ENY2 [Cucumis sativus] >KGN47611.1 hypothetical protein Csa_019040 [Cucumis sativus])

HSP 1 Score: 204.9 bits (520), Expect = 3.6e-49
Identity = 104/110 (94.55%), Postives = 107/110 (97.27%), Query Frame = 0


Query: 2   RASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALC 61
           RASINRPPTPE EDDR+ Q TFQE+INIKLIESGEKERLKELLR+RLIECGWKDEMKALC
Sbjct: 2   RASINRPPTPEPEDDREHQPTFQESINIKLIESGEKERLKELLRERLIECGWKDEMKALC 61

Query: 62  RAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLGSTAI 112
           RAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLGSTAI
Sbjct: 62  RAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLGSTAI 111

[Close]

BLAST of MS000984 vs. NCBI nr
Match: XP_022951096.1 (transcription and mRNA export factor SUS1 [Cucurbita moschata] >XP_022951097.1 transcription and mRNA export factor SUS1 [Cucurbita moschata])

HSP 1 Score: 204.5 bits (519), Expect = 4.7e-49
Identity = 104/110 (94.55%), Postives = 106/110 (96.36%), Query Frame = 0


Query: 2   RASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALC 61
           R SINRPPTPE EDDR+QQ TFQETINIKLIESGEKERLKELLR+RLIECGWKDEMKALC
Sbjct: 2   RTSINRPPTPEPEDDREQQPTFQETINIKLIESGEKERLKELLRERLIECGWKDEMKALC 61

Query: 62  RAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLGSTAI 112
           RAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFL STAI
Sbjct: 62  RAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLASTAI 111

[Close]

BLAST of MS000984 vs. NCBI nr
Match: KAG7020143.1 (Transcription and mRNA export factor SUS1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 203.4 bits (516), Expect = 1.0e-48
Identity = 103/110 (93.64%), Postives = 106/110 (96.36%), Query Frame = 0


Query: 2   RASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALC 61
           R SINRPPTPE EDDR+QQ TFQETINIKLIESGEKERLKELLR+RLIECGWKDEMKALC
Sbjct: 24  RTSINRPPTPEPEDDREQQPTFQETINIKLIESGEKERLKELLRERLIECGWKDEMKALC 83

Query: 62  RAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLGSTAI 112
           RAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIR+FL STAI
Sbjct: 84  RAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRTFLASTAI 133

[Close]

BLAST of MS000984 vs. NCBI nr
Match: XP_023002845.1 (transcription and mRNA export factor ENY2 [Cucurbita maxima] >XP_023002846.1 transcription and mRNA export factor ENY2 [Cucurbita maxima])

HSP 1 Score: 203.4 bits (516), Expect = 1.0e-48
Identity = 103/110 (93.64%), Postives = 106/110 (96.36%), Query Frame = 0


Query: 2   RASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALC 61
           R SINRPPTPE EDDR+QQ TFQETINIKLIESGEKERLKELLR+RLIECGWKDEMKALC
Sbjct: 2   RTSINRPPTPEPEDDREQQPTFQETINIKLIESGEKERLKELLRERLIECGWKDEMKALC 61

Query: 62  RAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLGSTAI 112
           RAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIR+FL STAI
Sbjct: 62  RAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRTFLASTAI 111

[Close]

BLAST of MS000984 vs. ExPASy Swiss-Prot
Match: Q6NQ54 (Transcription and mRNA export factor ENY2 OS=Arabidopsis thaliana OX=3702 GN=ENY2 PE=1 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.0e-35
Identity = 71/112 (63.39%), Postives = 93/112 (83.04%), Query Frame = 0


Query: 4   SINRPPTPEAEDDRD----QQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKA 63
           S+NRPPTP+ +D  D     ++T +E IN+KL+ESGEKE L EL+RDRL+ECGWKDEM+ 
Sbjct: 4   SVNRPPTPDEDDVADGFEKDKVTLREIINVKLVESGEKENLMELVRDRLVECGWKDEMRI 63

Query: 64  LCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLGSTAI 112
            CR +V+KKGR +V+VD+L++VITPKGRASVPDSVKAELL RI++F+ S A+
Sbjct: 64  ACREHVKKKGRKDVTVDELIRVITPKGRASVPDSVKAELLNRIQNFIVSAAL 115

[Close]

BLAST of MS000984 vs. ExPASy Swiss-Prot
Match: B5FZ63 (Transcription and mRNA export factor ENY2 OS=Taeniopygia guttata OX=59729 GN=ENY2 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.4e-26
Identity = 61/95 (64.21%), Postives = 77/95 (81.05%), Query Frame = 0


Query: 16  DRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSV 75
           ++D Q+  + TIN KLIE+GE+ERLKELLR +LIECGWKD++KA C+  +++KG  +V+V
Sbjct: 2   NKDAQM--RATINQKLIETGERERLKELLRAKLIECGWKDQLKAHCKDVIKEKGLEHVTV 61

Query: 76  DDLVQVITPKGRASVPDSVKAELLQRIRSFLGSTA 111
           DDLV  ITPKGRA VPDSVK ELLQRIR+FL   A
Sbjct: 62  DDLVAEITPKGRALVPDSVKKELLQRIRTFLAQHA 94

[Close]

BLAST of MS000984 vs. ExPASy Swiss-Prot
Match: Q3ZBJ0 (Transcription and mRNA export factor ENY2 OS=Bos taurus OX=9913 GN=ENY2 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-25
Identity = 60/95 (63.16%), Postives = 76/95 (80.00%), Query Frame = 0


Query: 16  DRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSV 75
           ++D Q+  +  IN KLIE+GE+ERLKELLR +LIECGWKD++KA C+  +++KG  +V+V
Sbjct: 7   NKDAQM--RAAINQKLIETGERERLKELLRAKLIECGWKDQLKAHCKEVIKEKGLEHVTV 66

Query: 76  DDLVQVITPKGRASVPDSVKAELLQRIRSFLGSTA 111
           DDLV  ITPKGRA VPDSVK ELLQRIR+FL   A
Sbjct: 67  DDLVAEITPKGRALVPDSVKKELLQRIRTFLAQHA 99

[Close]

BLAST of MS000984 vs. ExPASy Swiss-Prot
Match: Q6DH42 (Transcription and mRNA export factor ENY2 OS=Danio rerio OX=7955 GN=eny2 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-25
Identity = 56/80 (70.00%), Postives = 69/80 (86.25%), Query Frame = 0


Query: 27  INIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKG 86
           IN KLIE GE+ERLKELLR +LIECGW+D++KALC+  +++KG  NV+V+DLV  +TPKG
Sbjct: 11  INQKLIEMGERERLKELLRAKLIECGWRDQLKALCKEVIKEKGIENVTVEDLVAGVTPKG 70

Query: 87  RASVPDSVKAELLQRIRSFL 107
           RA VPDSVK ELLQRIR+FL
Sbjct: 71  RALVPDSVKKELLQRIRAFL 90

[Close]

BLAST of MS000984 vs. ExPASy Swiss-Prot
Match: Q9NPA8 (Transcription and mRNA export factor ENY2 OS=Homo sapiens OX=9606 GN=ENY2 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-25
Identity = 60/95 (63.16%), Postives = 76/95 (80.00%), Query Frame = 0


Query: 16  DRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSV 75
           ++D Q+  +  IN KLIE+GE+ERLKELLR +LIECGWKD++KA C+  +++KG  +V+V
Sbjct: 7   NKDAQM--RAAINQKLIETGERERLKELLRAKLIECGWKDQLKAHCKEVIKEKGLEHVTV 66

Query: 76  DDLVQVITPKGRASVPDSVKAELLQRIRSFLGSTA 111
           DDLV  ITPKGRA VPDSVK ELLQRIR+FL   A
Sbjct: 67  DDLVAEITPKGRALVPDSVKKELLQRIRTFLAQHA 99

[Close]

BLAST of MS000984 vs. ExPASy TrEMBL
Match: A0A6J1BSW0 (Transcription and mRNA export factor ENY2 OS=Momordica charantia OX=3673 GN=LOC111004543 PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.2e-52
Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 2   RASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALC 61
           RASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLR+RLIECGWKDEMKALC
Sbjct: 2   RASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLRERLIECGWKDEMKALC 61

Query: 62  RAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLGSTAI 112
           RAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLGSTAI
Sbjct: 62  RAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLGSTAI 111

[Close]

BLAST of MS000984 vs. ExPASy TrEMBL
Match: A0A0A0KIM7 (Transcription and mRNA export factor ENY2 OS=Cucumis sativus OX=3659 GN=Csa_6G365120 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.7e-49
Identity = 104/110 (94.55%), Postives = 107/110 (97.27%), Query Frame = 0


Query: 2   RASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALC 61
           RASINRPPTPE EDDR+ Q TFQE+INIKLIESGEKERLKELLR+RLIECGWKDEMKALC
Sbjct: 2   RASINRPPTPEPEDDREHQPTFQESINIKLIESGEKERLKELLRERLIECGWKDEMKALC 61

Query: 62  RAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLGSTAI 112
           RAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLGSTAI
Sbjct: 62  RAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLGSTAI 111

[Close]

BLAST of MS000984 vs. ExPASy TrEMBL
Match: A0A6J1GGQ4 (Transcription and mRNA export factor ENY2 OS=Cucurbita moschata OX=3662 GN=LOC111454046 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.3e-49
Identity = 104/110 (94.55%), Postives = 106/110 (96.36%), Query Frame = 0


Query: 2   RASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALC 61
           R SINRPPTPE EDDR+QQ TFQETINIKLIESGEKERLKELLR+RLIECGWKDEMKALC
Sbjct: 2   RTSINRPPTPEPEDDREQQPTFQETINIKLIESGEKERLKELLRERLIECGWKDEMKALC 61

Query: 62  RAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLGSTAI 112
           RAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFL STAI
Sbjct: 62  RAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLASTAI 111

[Close]

BLAST of MS000984 vs. ExPASy TrEMBL
Match: A0A6J1KQ41 (Transcription and mRNA export factor ENY2 OS=Cucurbita maxima OX=3661 GN=LOC111496587 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 5.0e-49
Identity = 103/110 (93.64%), Postives = 106/110 (96.36%), Query Frame = 0


Query: 2   RASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALC 61
           R SINRPPTPE EDDR+QQ TFQETINIKLIESGEKERLKELLR+RLIECGWKDEMKALC
Sbjct: 2   RTSINRPPTPEPEDDREQQPTFQETINIKLIESGEKERLKELLRERLIECGWKDEMKALC 61

Query: 62  RAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLGSTAI 112
           RAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIR+FL STAI
Sbjct: 62  RAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRTFLASTAI 111

[Close]

BLAST of MS000984 vs. ExPASy TrEMBL
Match: A0A1S3BDR5 (Transcription and mRNA export factor ENY2 OS=Cucumis melo OX=3656 GN=LOC103488502 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 8.6e-49
Identity = 103/110 (93.64%), Postives = 106/110 (96.36%), Query Frame = 0


Query: 2   RASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALC 61
           RASINRPPTPE EDDR+ Q TFQE+INIKLIESGEKERLKELLR+RLIECGWKDEMKALC
Sbjct: 2   RASINRPPTPEPEDDREHQPTFQESINIKLIESGEKERLKELLRERLIECGWKDEMKALC 61

Query: 62  RAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLGSTAI 112
           RAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFL STAI
Sbjct: 62  RAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLASTAI 111

[Close]

BLAST of MS000984 vs. TAIR 10
Match: AT3G27100.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, enhancer of yellow 2 (InterPro:IPR018783); Has 288 Blast hits to 288 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 197; Fungi - 20; Plants - 51; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). )

HSP 1 Score: 148.7 bits (374), Expect = 2.8e-36
Identity = 71/112 (63.39%), Postives = 93/112 (83.04%), Query Frame = 0


Query: 4   SINRPPTPEAEDDRD----QQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKA 63
           S+NRPPTP+ +D  D     ++T +E IN+KL+ESGEKE L EL+RDRL+ECGWKDEM+ 
Sbjct: 4   SVNRPPTPDEDDVADGFEKDKVTLREIINVKLVESGEKENLMELVRDRLVECGWKDEMRI 63

Query: 64  LCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLGSTAI 112
            CR +V+KKGR +V+VD+L++VITPKGRASVPDSVKAELL RI++F+ S A+
Sbjct: 64  ACREHVKKKGRKDVTVDELIRVITPKGRASVPDSVKAELLNRIQNFIVSAAL 115

[Close]

BLAST of MS000984 vs. TAIR 10
Match: AT3G27100.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, enhancer of yellow 2 (InterPro:IPR018783); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 118.6 bits (296), Expect = 3.1e-27
Identity = 54/91 (59.34%), Postives = 73/91 (80.22%), Query Frame = 0


Query: 4  SINRPPTPEAEDDRD----QQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKA 63
          S+NRPPTP+ +D  D     ++T +E IN+KL+ESGEKE L EL+RDRL+ECGWKDEM+ 
Sbjct: 4  SVNRPPTPDEDDVADGFEKDKVTLREIINVKLVESGEKENLMELVRDRLVECGWKDEMRI 63

Query: 64 LCRAYVRKKGRNNVSVDDLVQVITPKGRASV 91
           CR +V+KKGR +V+VD+L++VITPKGR  +
Sbjct: 64 ACREHVKKKGRKDVTVDELIRVITPKGRGKI 94

The following BLAST results are available for this feature:

BLAST of MS000984 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131273.1	4.5e-52	99.09	transcription and mRNA export factor SUS1 [Momordica charantia]	[more]
XP_011657386.1	3.6e-49	94.55	transcription and mRNA export factor ENY2 [Cucumis sativus] >KGN47611.1 hypothet...	[more]
XP_022951096.1	4.7e-49	94.55	transcription and mRNA export factor SUS1 [Cucurbita moschata] >XP_022951097.1 t...	[more]
KAG7020143.1	1.0e-48	93.64	Transcription and mRNA export factor SUS1, partial [Cucurbita argyrosperma subsp...	[more]
XP_023002845.1	1.0e-48	93.64	transcription and mRNA export factor ENY2 [Cucurbita maxima] >XP_023002846.1 tra...	[more]

BLAST of MS000984 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NQ54	4.0e-35	63.39	Transcription and mRNA export factor ENY2 OS=Arabidopsis thaliana OX=3702 GN=ENY...	[more]
B5FZ63	4.4e-26	64.21	Transcription and mRNA export factor ENY2 OS=Taeniopygia guttata OX=59729 GN=ENY...	[more]
Q3ZBJ0	1.3e-25	63.16	Transcription and mRNA export factor ENY2 OS=Bos taurus OX=9913 GN=ENY2 PE=3 SV=...	[more]
Q6DH42	1.3e-25	70.00	Transcription and mRNA export factor ENY2 OS=Danio rerio OX=7955 GN=eny2 PE=3 SV...	[more]
Q9NPA8	1.3e-25	63.16	Transcription and mRNA export factor ENY2 OS=Homo sapiens OX=9606 GN=ENY2 PE=1 S...	[more]

BLAST of MS000984 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BSW0	2.2e-52	99.09	Transcription and mRNA export factor ENY2 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A0A0KIM7	1.7e-49	94.55	Transcription and mRNA export factor ENY2 OS=Cucumis sativus OX=3659 GN=Csa_6G36...	[more]
A0A6J1GGQ4	2.3e-49	94.55	Transcription and mRNA export factor ENY2 OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1KQ41	5.0e-49	93.64	Transcription and mRNA export factor ENY2 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A1S3BDR5	8.6e-49	93.64	Transcription and mRNA export factor ENY2 OS=Cucumis melo OX=3656 GN=LOC10348850...	[more]

BLAST of MS000984 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27100.1	2.8e-36	63.39	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT3G27100.2	3.1e-27	59.34	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038212	Transcription factor EnY2 superfamily	GENE3D	1.10.246.140		coord: 13..110 e-value: 3.5E-37 score: 128.6
IPR018783	Transcription factor, enhancer of yellow 2	PFAM	PF10163	EnY2	coord: 25..106 e-value: 1.1E-32 score: 112.3
IPR018783	Transcription factor, enhancer of yellow 2	PANTHER	PTHR12514	ENHANCER OF YELLOW 2 TRANSCRIPTION FACTOR	coord: 2..110
IPR018783	Transcription factor, enhancer of yellow 2	HAMAP	MF_03046	ENY2_Sus1	coord: 22..109 score: 21.223001
None	No IPR available	PANTHER	PTHR12514:SF3	TRANSCRIPTION AND MRNA EXPORT FACTOR ENY2	coord: 2..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000984.1	MS000984.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006406	mRNA export from nucleus
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005643	nuclear pore
cellular_component	GO:0000124	SAGA complex
molecular_function	GO:0003713	transcription coactivator activity