MS000980 (gene) Bitter gourd (TR) v1

Overview
NameMS000980
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold36: 603223 .. 603369 (+)
RNA-Seq ExpressionMS000980
SyntenyMS000980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTCAAGTTTCAGACATCCAAGGAAGGATTAGACCAGCATTAGCTCTCAAGCCTGGCAAAGGCGAAAGCTCTTGGACGGCAACTGCGAATGTTTTGAGAAACGAGCCTTTAGAGATGTCATCATTAACAAACACCTTAATAAGATAT

mRNA sequence

GTTCAAGTTTCAGACATCCAAGGAAGGATTAGACCAGCATTAGCTCTCAAGCCTGGCAAAGGCGAAAGCTCTTGGACGGCAACTGCGAATGTTTTGAGAAACGAGCCTTTAGAGATGTCATCATTAACAAACACCTTAATAAGATAT

Coding sequence (CDS)

GTTCAAGTTTCAGACATCCAAGGAAGGATTAGACCAGCATTAGCTCTCAAGCCTGGCAAAGGCGAAAGCTCTTGGACGGCAACTGCGAATGTTTTGAGAAACGAGCCTTTAGAGATGTCATCATTAACAAACACCTTAATAAGATAT

Protein sequence

VQVSDIQGRIRPALALKPGKGESSWTATANVLRNEPLEMSSLTNTLIRY
Homology
BLAST of MS000980 vs. NCBI nr
Match: KAF1862195.1 (hypothetical protein Lal_00026719 [Lupinus albus])

HSP 1 Score: 60.1 bits (144), Expect = 6.3e-06
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 0

Query: 3   VSDIQGRIRPALALKPGKGESSWTATANVLRNEP 37
           VSDIQGRIR  L LKPG+GE+SW+ATANVLRN+P
Sbjct: 111 VSDIQGRIRTTLVLKPGEGENSWSATANVLRNKP 144

BLAST of MS000980 vs. NCBI nr
Match: KCW62444.1 (hypothetical protein EUGRSUZ_H05083 [Eucalyptus grandis])

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-05
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 0

Query: 3  VSDIQGRIRPALALKPGKGESSWTATANVLRNEPLEMSS 42
          VSDIQGRI+ ALALKPG+G+SS  ATANVLRN+P  +SS
Sbjct: 2  VSDIQGRIKAALALKPGEGKSSQAATANVLRNKPSSLSS 40

BLAST of MS000980 vs. NCBI nr
Match: KAF1862432.1 (hypothetical protein Lal_00026966 [Lupinus albus])

HSP 1 Score: 58.5 bits (140), Expect = 1.8e-05
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 0

Query: 3  VSDIQGRIRPALALKPGKGESSWTATANVLRNEP 37
          VSDIQGRIR  L LKPG+GE+SW+AT NVLRN+P
Sbjct: 49 VSDIQGRIRTTLVLKPGEGENSWSATVNVLRNKP 82

BLAST of MS000980 vs. NCBI nr
Match: KGN48407.1 (hypothetical protein Csa_003040 [Cucumis sativus])

HSP 1 Score: 57.0 bits (136), Expect = 5.3e-05
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0

Query: 1  VQVSDIQGRIRPALALKPGKGESSWTATANVLRNEP 37
          V+VSDIQGRI+ A ALKPG+GESS  ATANVLRN+P
Sbjct: 60 VRVSDIQGRIKTAEALKPGEGESSQAATANVLRNKP 95

BLAST of MS000980 vs. ExPASy TrEMBL
Match: A0A6A5LTA5 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00026719 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.0e-06
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 0

Query: 3   VSDIQGRIRPALALKPGKGESSWTATANVLRNEP 37
           VSDIQGRIR  L LKPG+GE+SW+ATANVLRN+P
Sbjct: 111 VSDIQGRIRTTLVLKPGEGENSWSATANVLRNKP 144

BLAST of MS000980 vs. ExPASy TrEMBL
Match: A0A059B8W6 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H05083 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.2e-06
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 0

Query: 3  VSDIQGRIRPALALKPGKGESSWTATANVLRNEPLEMSS 42
          VSDIQGRI+ ALALKPG+G+SS  ATANVLRN+P  +SS
Sbjct: 2  VSDIQGRIKAALALKPGEGKSSQAATANVLRNKPSSLSS 40

BLAST of MS000980 vs. ExPASy TrEMBL
Match: A0A6A5LUV2 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00026966 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.8e-06
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 0

Query: 3  VSDIQGRIRPALALKPGKGESSWTATANVLRNEP 37
          VSDIQGRIR  L LKPG+GE+SW+AT NVLRN+P
Sbjct: 49 VSDIQGRIRTTLVLKPGEGENSWSATVNVLRNKP 82

BLAST of MS000980 vs. ExPASy TrEMBL
Match: A0A0A0KJ49 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486800 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.6e-05
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0

Query: 1  VQVSDIQGRIRPALALKPGKGESSWTATANVLRNEP 37
          V+VSDIQGRI+ A ALKPG+GESS  ATANVLRN+P
Sbjct: 60 VRVSDIQGRIKTAEALKPGEGESSQAATANVLRNKP 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAF1862195.16.3e-0679.41hypothetical protein Lal_00026719 [Lupinus albus][more]
KCW62444.11.1e-0574.36hypothetical protein EUGRSUZ_H05083 [Eucalyptus grandis][more]
KAF1862432.11.8e-0576.47hypothetical protein Lal_00026966 [Lupinus albus][more]
KGN48407.15.3e-0577.78hypothetical protein Csa_003040 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6A5LTA53.0e-0679.41Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00026719 PE=4 SV=1[more]
A0A059B8W65.2e-0674.36Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H05083 PE=4 SV... [more]
A0A6A5LUV28.8e-0676.47Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00026966 PE=4 SV=1[more]
A0A0A0KJ492.6e-0577.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486800 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS000980.1MS000980.1mRNA