MS000961 (gene) Bitter gourd (TR) v1

Overview


Name	MS000961
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein Iojap-related, mitochondrial
Location	scaffold36: 483353 .. 484432 (-)
RNA-Seq Expression	MS000961
Synteny	MS000961

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGTGGCGCAAAGAATTCGATCTTCATCTGCTTTTTCTTCCACGATTCGTTCTTTGCAACAATGGAATAAGGGCATTTTTGTTCACAACCATACTGTATCTTCCTCCACTGCCAGCTCTAGCAACAATGGTCTTCTTGATCTTCAGGAGGTCGAGACGGTTCTGAATAACGTGAAGGCGGACGATGTCAAAGTGATACCAATCCGCAAAGACTGTGATTGGGCTGATTACATGGTGTTCGCCACTGGTAGGTCGACCTGGCATGTTAAGAACATTGCTCAAGCCCTAATTTACAAGGCAGGTTGCTTTTACATTTCTGTCTGATTTTACTGTTCCGAAATTTCAGTTAGATTGCCAAGCTGATGAATTTGAAGAAGAGAAGTTTCTGGTTGTAGTGGCTTAATATGTAATCGCGTTTATTTGAATCGACAGATCAAGCAAAAGCAGAAAGGAGCTAGACAGTTGATACTCCCTAGTGTCGAAGGGCAAGAGGACGGAAAGTGGATTGTCATCGATTCTGGTCTGTCTACTCTCTTTAACGAGTACTATGAATGTTCTTGTTCTTGAATTTTTTAGGGAACGTTCTTGCAGATAAGTCAATTGTTACTGTCCTTCTAGTCTACGCCTAAACAAAATATCAACCAACTAATTCGAATCACATAATTTGAAGTGTTTTCAGTGCACCTTAGCCCTCTTCGCGACACTTTATCTTAGGTTTATACTATGATTTCTGCTGTTTGCAGTGTCTCGAATTAGTTAAAATTCTTTATACTAATCATTTATGCTAGGCTTATCTAGGAATGGTAATGATAATGAAAATCAATAGTAGTATTGAATTAACAAAAATTGTGCCATAAGCTTGTCATAATTATACTTATATCTATCTATTGGCCATGTCCTAAGGGGAGTTCTCAATGTGTATATTTTAATTGATCACTATTGATGTGTTTATAATTTGTCTTTGAATATTTCCTATTAGGTAAAGTAGTTGTTCACGCCCTTGATGAGAATGCCAGAACTTATTACAATCTGGAAAGCCTTTGGTCAACCGAGACAGCGCCAGATGATTCTTCGCAG

mRNA sequence

ATGTTGGTGGCGCAAAGAATTCGATCTTCATCTGCTTTTTCTTCCACGATTCGTTCTTTGCAACAATGGAATAAGGGCATTTTTGTTCACAACCATACTGTATCTTCCTCCACTGCCAGCTCTAGCAACAATGGTCTTCTTGATCTTCAGGAGGTCGAGACGGTTCTGAATAACGTGAAGGCGGACGATGTCAAAGTGATACCAATCCGCAAAGACTGTGATTGGGCTGATTACATGGTGTTCGCCACTGGTAGGTCGACCTGGCATGTTAAGAACATTGCTCAAGCCCTAATTTACAAGGCAGGTTGCTTTTACATTTCTATCAAGCAAAAGCAGAAAGGAGCTAGACAGTTGATACTCCCTAGTGTCGAAGGGCAAGAGGACGGAAAGTGGATTGTCATCGATTCTGGTAAAGTAGTTGTTCACGCCCTTGATGAGAATGCCAGAACTTATTACAATCTGGAAAGCCTTTGGTCAACCGAGACAGCGCCAGATGATTCTTCGCAG

Coding sequence (CDS)

ATGTTGGTGGCGCAAAGAATTCGATCTTCATCTGCTTTTTCTTCCACGATTCGTTCTTTGCAACAATGGAATAAGGGCATTTTTGTTCACAACCATACTGTATCTTCCTCCACTGCCAGCTCTAGCAACAATGGTCTTCTTGATCTTCAGGAGGTCGAGACGGTTCTGAATAACGTGAAGGCGGACGATGTCAAAGTGATACCAATCCGCAAAGACTGTGATTGGGCTGATTACATGGTGTTCGCCACTGGTAGGTCGACCTGGCATGTTAAGAACATTGCTCAAGCCCTAATTTACAAGGCAGGTTGCTTTTACATTTCTATCAAGCAAAAGCAGAAAGGAGCTAGACAGTTGATACTCCCTAGTGTCGAAGGGCAAGAGGACGGAAAGTGGATTGTCATCGATTCTGGTAAAGTAGTTGTTCACGCCCTTGATGAGAATGCCAGAACTTATTACAATCTGGAAAGCCTTTGGTCAACCGAGACAGCGCCAGATGATTCTTCGCAG

Protein sequence

MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYKAGCFYISIKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ

Homology

[Close]

BLAST of MS000961 vs. NCBI nr
Match: XP_022131306.1 (protein Iojap-related, mitochondrial [Momordica charantia])

HSP 1 Score: 315.5 bits (807), Expect = 2.9e-82
Identity = 162/169 (95.86%), Postives = 162/169 (95.86%), Query Frame = 0


Query: 1   MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVK 60
           MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVK
Sbjct: 1   MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVK 60

Query: 61  ADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYKAGCFYISIKQKQKGARQLIL 120
           ADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYK       IKQKQKGARQLIL
Sbjct: 61  ADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYK-------IKQKQKGARQLIL 120

Query: 121 PSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ 170
           PSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ
Sbjct: 121 PSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ 162

[Close]

BLAST of MS000961 vs. NCBI nr
Match: XP_038884261.1 (protein Iojap-related, mitochondrial [Benincasa hispida])

HSP 1 Score: 285.0 bits (728), Expect = 4.1e-73
Identity = 143/169 (84.62%), Postives = 154/169 (91.12%), Query Frame = 0


Query: 1   MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVK 60
           ML AQRI+SSSAFSSTIRSLQ WN+G+ VHNH +SSSTASS+N GLLDLQEVET+LNNVK
Sbjct: 1   MLAAQRIQSSSAFSSTIRSLQLWNRGVSVHNHALSSSTASSTNKGLLDLQEVETILNNVK 60

Query: 61  ADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYKAGCFYISIKQKQKGARQLIL 120
           ADDVKVI +RK+CDWADYMVFATGRSTWHVKNIAQALIYK       +KQKQKGARQL+L
Sbjct: 61  ADDVKVILVRKECDWADYMVFATGRSTWHVKNIAQALIYK-------VKQKQKGARQLVL 120

Query: 121 PSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ 170
           PSVEGQEDGKWIVIDSGKVVVHALDENAR+YYNLESLWSTET  DDSSQ
Sbjct: 121 PSVEGQEDGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPQDDSSQ 162

[Close]

BLAST of MS000961 vs. NCBI nr
Match: XP_022997359.1 (protein Iojap-related, mitochondrial [Cucurbita maxima])

HSP 1 Score: 282.3 bits (721), Expect = 2.7e-72
Identity = 142/169 (84.02%), Postives = 151/169 (89.35%), Query Frame = 0


Query: 1   MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVK 60
           ML AQRIRSSSA SSTIR LQ WN+G+ V NHT+SSSTASS N GLLDLQEVET+LNNVK
Sbjct: 1   MLAAQRIRSSSAISSTIRCLQLWNRGVSVRNHTLSSSTASSINEGLLDLQEVETILNNVK 60

Query: 61  ADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYKAGCFYISIKQKQKGARQLIL 120
           ADDV+VIP+RKDCDWADYMVFATGRSTWHVKNIAQALIYK       +KQKQKGARQL+L
Sbjct: 61  ADDVRVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYK-------VKQKQKGARQLVL 120

Query: 121 PSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ 170
           PSVEGQEDGKWIVIDSGKVVVHALDE ARTYYNLESLWST+T  DDSSQ
Sbjct: 121 PSVEGQEDGKWIVIDSGKVVVHALDEKARTYYNLESLWSTDTPQDDSSQ 162

[Close]

BLAST of MS000961 vs. NCBI nr
Match: XP_022961631.1 (protein Iojap-related, mitochondrial [Cucurbita moschata] >KAG6598270.1 Protein Iojap-related, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 280.4 bits (716), Expect = 1.0e-71
Identity = 141/169 (83.43%), Postives = 150/169 (88.76%), Query Frame = 0


Query: 1   MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVK 60
           ML AQRIRSSSA SSTIR LQ WN+G+ V NHT+SSSTASS   GLLDLQEVET+LNNVK
Sbjct: 1   MLAAQRIRSSSAISSTIRCLQLWNRGVSVRNHTLSSSTASSIKEGLLDLQEVETILNNVK 60

Query: 61  ADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYKAGCFYISIKQKQKGARQLIL 120
           ADDV+VIP+RKDCDWADYMVFATGRSTWHVKNIAQALIYK       +KQKQKGARQL+L
Sbjct: 61  ADDVRVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYK-------VKQKQKGARQLVL 120

Query: 121 PSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ 170
           PSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWS +T  DDSSQ
Sbjct: 121 PSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSADTPQDDSSQ 162

[Close]

BLAST of MS000961 vs. NCBI nr
Match: KAG7029243.1 (3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 279.6 bits (714), Expect = 1.7e-71
Identity = 141/169 (83.43%), Postives = 150/169 (88.76%), Query Frame = 0


Query: 1   MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVK 60
           ML AQRIRSSSA SSTIR LQ WN+G+ V NHT+SSSTASS   GLLDLQEVET+LNNVK
Sbjct: 1   MLAAQRIRSSSAISSTIRCLQLWNRGVSVGNHTLSSSTASSIKEGLLDLQEVETILNNVK 60

Query: 61  ADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYKAGCFYISIKQKQKGARQLIL 120
           ADDV+VIP+RKDCDWADYMVFATGRSTWHVKNIAQALIYK       +KQKQKGARQL+L
Sbjct: 61  ADDVRVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYK-------VKQKQKGARQLVL 120

Query: 121 PSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ 170
           PSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWS +T  DDSSQ
Sbjct: 121 PSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSADTPQDDSSQ 162

[Close]

BLAST of MS000961 vs. ExPASy Swiss-Prot
Match: Q9CAF9 (Protein Iojap-related, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g67620 PE=2 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.5e-36
Identity = 88/171 (51.46%), Postives = 111/171 (64.91%), Query Frame = 0


Query: 1   MLVAQRIRSSSAFSSTIRSLQQWN---KGIFVHNHTVSSSTASSSNNGLLDLQEVETVLN 60
           ML   R R SS   +     Q W      IF  + + SSS   S+ + +L L EVE +L 
Sbjct: 1   MLTTLRSRCSSLLLN-----QSWKLAPNRIFASSPSFSSSAGISNVSEILTLPEVEKILA 60

Query: 61  NVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYKAGCFYISIKQKQKGARQ 120
           +VKAD+V VIP    C WAD+ V ATGRS WH++NIAQAL+Y+A       KQKQKGA+ 
Sbjct: 61  DVKADNVTVIPTHNHCFWADFTVIATGRSDWHLRNIAQALVYRA-------KQKQKGAKH 120

Query: 121 LILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSS 169
           ++LPSV+G  + KWIVID GK VVHALDE AR Y+NLESLWS E++  D+S
Sbjct: 121 VMLPSVQGY-NSKWIVIDYGKFVVHALDEKARGYFNLESLWSAESSGTDTS 158

[Close]

BLAST of MS000961 vs. ExPASy Swiss-Prot
Match: Q02SH2 (Ribosomal silencing factor RsfS OS=Pseudomonas aeruginosa (strain UCBPP-PA14) OX=208963 GN=rsfS PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-10
Identity = 37/103 (35.92%), Postives = 55/103 (53.40%), Query Frame = 0


Query: 56  LNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYKAGCFYISIKQKQKGA 115
           L ++KA D+  + +R      DYMV A G S+  VK++A  ++ KA         K+ G 
Sbjct: 14  LEDLKAQDIVTLDVRDKTSVTDYMVIACGSSSRQVKSLADNVLTKA---------KENGV 73

Query: 116 RQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLW 159
           + L     EG E G+W ++D G VVVH +    R +Y+LE LW
Sbjct: 74  KPL---GSEGLESGEWALLDLGDVVVHVMLPATRQFYDLERLW 104

[Close]

BLAST of MS000961 vs. ExPASy Swiss-Prot
Match: P0AAT7 (Ribosomal silencing factor RsfS OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=rsfS PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.8e-10
Identity = 32/104 (30.77%), Postives = 53/104 (50.96%), Query Frame = 0


Query: 56  LNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYKAGCFYISIKQKQKGA 115
           ++++K  D+  + ++      D M+  TG S+ HV +IA  ++            ++  A
Sbjct: 14  IDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVV------------QESRA 73

Query: 116 RQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWS 160
             L+   VEG+    WIV+D G V+VH + E +R  Y LE LWS
Sbjct: 74  AGLLPLGVEGENSADWIVVDLGDVIVHVMQEESRRLYELEKLWS 105

[Close]

BLAST of MS000961 vs. ExPASy Swiss-Prot
Match: P0AAT6 (Ribosomal silencing factor RsfS OS=Escherichia coli (strain K12) OX=83333 GN=rsfS PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.8e-10
Identity = 32/104 (30.77%), Postives = 53/104 (50.96%), Query Frame = 0


Query: 56  LNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYKAGCFYISIKQKQKGA 115
           ++++K  D+  + ++      D M+  TG S+ HV +IA  ++            ++  A
Sbjct: 14  IDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVV------------QESRA 73

Query: 116 RQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWS 160
             L+   VEG+    WIV+D G V+VH + E +R  Y LE LWS
Sbjct: 74  AGLLPLGVEGENSADWIVVDLGDVIVHVMQEESRRLYELEKLWS 105

[Close]

BLAST of MS000961 vs. ExPASy Swiss-Prot
Match: P0AAT8 (Ribosomal silencing factor RsfS OS=Shigella flexneri OX=623 GN=rsfS PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.8e-10
Identity = 32/104 (30.77%), Postives = 53/104 (50.96%), Query Frame = 0


Query: 56  LNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYKAGCFYISIKQKQKGA 115
           ++++K  D+  + ++      D M+  TG S+ HV +IA  ++            ++  A
Sbjct: 14  IDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVV------------QESRA 73

Query: 116 RQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWS 160
             L+   VEG+    WIV+D G V+VH + E +R  Y LE LWS
Sbjct: 74  AGLLPLGVEGENSADWIVVDLGDVIVHVMQEESRRLYELEKLWS 105

[Close]

BLAST of MS000961 vs. ExPASy TrEMBL
Match: A0A6J1BP74 (protein Iojap-related, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111004570 PE=3 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.4e-82
Identity = 162/169 (95.86%), Postives = 162/169 (95.86%), Query Frame = 0


Query: 1   MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVK 60
           MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVK
Sbjct: 1   MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVK 60

Query: 61  ADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYKAGCFYISIKQKQKGARQLIL 120
           ADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYK       IKQKQKGARQLIL
Sbjct: 61  ADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYK-------IKQKQKGARQLIL 120

Query: 121 PSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ 170
           PSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ
Sbjct: 121 PSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ 162

[Close]

BLAST of MS000961 vs. ExPASy TrEMBL
Match: A0A6J1KB66 (protein Iojap-related, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111492299 PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.3e-72
Identity = 142/169 (84.02%), Postives = 151/169 (89.35%), Query Frame = 0


Query: 1   MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVK 60
           ML AQRIRSSSA SSTIR LQ WN+G+ V NHT+SSSTASS N GLLDLQEVET+LNNVK
Sbjct: 1   MLAAQRIRSSSAISSTIRCLQLWNRGVSVRNHTLSSSTASSINEGLLDLQEVETILNNVK 60

Query: 61  ADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYKAGCFYISIKQKQKGARQLIL 120
           ADDV+VIP+RKDCDWADYMVFATGRSTWHVKNIAQALIYK       +KQKQKGARQL+L
Sbjct: 61  ADDVRVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYK-------VKQKQKGARQLVL 120

Query: 121 PSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ 170
           PSVEGQEDGKWIVIDSGKVVVHALDE ARTYYNLESLWST+T  DDSSQ
Sbjct: 121 PSVEGQEDGKWIVIDSGKVVVHALDEKARTYYNLESLWSTDTPQDDSSQ 162

[Close]

BLAST of MS000961 vs. ExPASy TrEMBL
Match: A0A6J1HAW7 (protein Iojap-related, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111462348 PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.9e-72
Identity = 141/169 (83.43%), Postives = 150/169 (88.76%), Query Frame = 0


Query: 1   MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVK 60
           ML AQRIRSSSA SSTIR LQ WN+G+ V NHT+SSSTASS   GLLDLQEVET+LNNVK
Sbjct: 1   MLAAQRIRSSSAISSTIRCLQLWNRGVSVRNHTLSSSTASSIKEGLLDLQEVETILNNVK 60

Query: 61  ADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYKAGCFYISIKQKQKGARQLIL 120
           ADDV+VIP+RKDCDWADYMVFATGRSTWHVKNIAQALIYK       +KQKQKGARQL+L
Sbjct: 61  ADDVRVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYK-------VKQKQKGARQLVL 120

Query: 121 PSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ 170
           PSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWS +T  DDSSQ
Sbjct: 121 PSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSADTPQDDSSQ 162

[Close]

BLAST of MS000961 vs. ExPASy TrEMBL
Match: A0A0A0LNG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G350450 PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 1.1e-71
Identity = 139/169 (82.25%), Postives = 151/169 (89.35%), Query Frame = 0


Query: 1   MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVK 60
           ML AQRIRSSSAFSSTIR LQ WN+G+FVH H +SSSTA S +  LLDL+EVET+LN VK
Sbjct: 1   MLAAQRIRSSSAFSSTIRFLQLWNRGVFVHGHALSSSTAGSPDKSLLDLKEVETILNKVK 60

Query: 61  ADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYKAGCFYISIKQKQKGARQLIL 120
           ADDVKVIP+RKDCDWADYMVFATGRSTWHVKNIAQALIY+       IKQKQKGARQL+L
Sbjct: 61  ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYQ-------IKQKQKGARQLVL 120

Query: 121 PSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ 170
           PSVEGQE+GKWIVIDSGKVVVHALDENAR+YYNLESLWSTET PDDS+Q
Sbjct: 121 PSVEGQEEGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQ 162

[Close]

BLAST of MS000961 vs. ExPASy TrEMBL
Match: A0A1S3BB26 (protein Iojap-related, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103487755 PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.9e-71
Identity = 138/169 (81.66%), Postives = 152/169 (89.94%), Query Frame = 0


Query: 1   MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVK 60
           ML AQRIRSSSAFSSTIR LQ WN+G+ VH+H +SSST+SS +  LLDLQEVET+LN VK
Sbjct: 1   MLAAQRIRSSSAFSSTIRFLQLWNRGVSVHSHALSSSTSSSPDKSLLDLQEVETILNKVK 60

Query: 61  ADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYKAGCFYISIKQKQKGARQLIL 120
           ADDVKVIP+RKDCDWADYMVFATGRSTWHVKNIAQALIYK       +KQKQKGA+QL+L
Sbjct: 61  ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYK-------VKQKQKGAKQLVL 120

Query: 121 PSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ 170
           PSVEGQE+GKWIVIDSGKVVVHALDENAR+YYNLESLWSTET PDDS+Q
Sbjct: 121 PSVEGQEEGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQ 162

[Close]

BLAST of MS000961 vs. TAIR 10
Match: AT1G67620.1 (Lojap-related protein )

HSP 1 Score: 153.3 bits (386), Expect = 1.7e-37
Identity = 88/171 (51.46%), Postives = 111/171 (64.91%), Query Frame = 0


Query: 1   MLVAQRIRSSSAFSSTIRSLQQWN---KGIFVHNHTVSSSTASSSNNGLLDLQEVETVLN 60
           ML   R R SS   +     Q W      IF  + + SSS   S+ + +L L EVE +L 
Sbjct: 1   MLTTLRSRCSSLLLN-----QSWKLAPNRIFASSPSFSSSAGISNVSEILTLPEVEKILA 60

Query: 61  NVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYKAGCFYISIKQKQKGARQ 120
           +VKAD+V VIP    C WAD+ V ATGRS WH++NIAQAL+Y+A       KQKQKGA+ 
Sbjct: 61  DVKADNVTVIPTHNHCFWADFTVIATGRSDWHLRNIAQALVYRA-------KQKQKGAKH 120

Query: 121 LILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSS 169
           ++LPSV+G  + KWIVID GK VVHALDE AR Y+NLESLWS E++  D+S
Sbjct: 121 VMLPSVQGY-NSKWIVIDYGKFVVHALDEKARGYFNLESLWSAESSGTDTS 158

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BLAST of MS000961 vs. TAIR 10
Match: AT3G12930.1 (Lojap-related protein )

HSP 1 Score: 43.5 bits (101), Expect = 1.9e-04
Identity = 33/123 (26.83%), Postives = 55/123 (44.72%), Query Frame = 0


Query: 51  EVETVLNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYKAGCFYISIKQ 110
           E+  V ++VKA D+KV+ ++    W  + + AT  S   +  I   +        ++ K+
Sbjct: 126 ELAKVASDVKAGDIKVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRM------RDLAEKK 185

Query: 111 KQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWST----ETAPDD 170
             K A   + P+        W ++D G VV+H      RT+YNLE  +      E   +D
Sbjct: 186 YGKVANGDVKPN-------SWTLLDFGDVVIHLFLPPQRTFYNLEDFYGNAMQIELPFED 235

The following BLAST results are available for this feature:

BLAST of MS000961 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131306.1	2.9e-82	95.86	protein Iojap-related, mitochondrial [Momordica charantia]	[more]
XP_038884261.1	4.1e-73	84.62	protein Iojap-related, mitochondrial [Benincasa hispida]	[more]
XP_022997359.1	2.7e-72	84.02	protein Iojap-related, mitochondrial [Cucurbita maxima]	[more]
XP_022961631.1	1.0e-71	83.43	protein Iojap-related, mitochondrial [Cucurbita moschata] >KAG6598270.1 Protein ...	[more]
KAG7029243.1	1.7e-71	83.43	3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic [Cucurbita argyrosperm...	[more]

BLAST of MS000961 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAF9	2.5e-36	51.46	Protein Iojap-related, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g6762...	[more]
Q02SH2	1.4e-10	35.92	Ribosomal silencing factor RsfS OS=Pseudomonas aeruginosa (strain UCBPP-PA14) OX...	[more]
P0AAT7	8.8e-10	30.77	Ribosomal silencing factor RsfS OS=Escherichia coli O6:H1 (strain CFT073 / ATCC ...	[more]
P0AAT6	8.8e-10	30.77	Ribosomal silencing factor RsfS OS=Escherichia coli (strain K12) OX=83333 GN=rsf...	[more]
P0AAT8	8.8e-10	30.77	Ribosomal silencing factor RsfS OS=Shigella flexneri OX=623 GN=rsfS PE=3 SV=1	[more]

BLAST of MS000961 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BP74	1.4e-82	95.86	protein Iojap-related, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111004...	[more]
A0A6J1KB66	1.3e-72	84.02	protein Iojap-related, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111492299...	[more]
A0A6J1HAW7	4.9e-72	83.43	protein Iojap-related, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC1114623...	[more]
A0A0A0LNG9	1.1e-71	82.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G350450 PE=3 SV=1	[more]
A0A1S3BB26	1.9e-71	81.66	protein Iojap-related, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103487755 PE=...	[more]

BLAST of MS000961 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67620.1	1.7e-37	51.46	Lojap-related protein	[more]
AT3G12930.1	1.9e-04	26.83	Lojap-related protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004394	Protein Iojap/ribosomal silencing factor RsfS	TIGRFAM	TIGR00090	TIGR00090	coord: 50..158 e-value: 1.0E-22 score: 78.2
IPR004394	Protein Iojap/ribosomal silencing factor RsfS	PANTHER	PTHR21043	IOJAP SUPERFAMILY ORTHOLOG	coord: 10..168
IPR004394	Protein Iojap/ribosomal silencing factor RsfS	HAMAP	MF_01477	Iojap_RsfS	coord: 42..159 score: 19.585739
None	No IPR available	PFAM	PF02410	RsfS	coord: 51..158 e-value: 9.0E-24 score: 83.8
None	No IPR available	PANTHER	PTHR21043:SF0	MITOCHONDRIAL ASSEMBLY OF RIBOSOMAL LARGE SUBUNIT PROTEIN 1	coord: 10..168
IPR043519	Nucleotidyltransferase superfamily	GENE3D	3.30.460.10	Beta Polymerase, domain 2	coord: 47..169 e-value: 4.5E-31 score: 108.9
IPR043519	Nucleotidyltransferase superfamily	SUPERFAMILY	81301	Nucleotidyltransferase	coord: 51..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000961.1	MS000961.1	mRNA