MS000958 (gene) Bitter gourd (TR) v1

Overview


Name	MS000958
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	NADH-ubiquinone reductase complex 1 MLRQ subunit
Location	scaffold36: 467016 .. 467376 (-)
RNA-Seq Expression	MS000958
Synteny	MS000958

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGCTTTTGTTGAATATTATGTGCAGGTGTATCCTCTCTTTGCTGCAGTTGGTGTGGCTGTTGGCATCTGTGGGATGCAGCTTGTTAGAAACATAACCACCAACCCTGAAGTCAGGTAAATATCATCGAAATGTAAATATTTTGATCAGTAAAAAGAGGGAAATTTCCTGTTCAGAAATCAGAATTGTTCTGATTGTTGTGGACGAATATGGCAGGGTTATCAAGGAGAAGAGAGCTGCAGGAGTGCTTGACAACTTTGAAGAAGGTGAAAAGTATGCTGAACATGGCCTCAGGAAGTTCCTCAGAACACGATCCCCTCAGATTATGCCTTCCATCAACAAATTCTTCTCAGATCCAAAC

mRNA sequence

CTTGCTTTTGTTGAATATTATGTGCAGGTGTATCCTCTCTTTGCTGCAGTTGGTGTGGCTGTTGGCATCTGTGGGATGCAGCTTGTTAGAAACATAACCACCAACCCTGAAGTCAGGGTTATCAAGGAGAAGAGAGCTGCAGGAGTGCTTGACAACTTTGAAGAAGGTGAAAAGTATGCTGAACATGGCCTCAGGAAGTTCCTCAGAACACGATCCCCTCAGATTATGCCTTCCATCAACAAATTCTTCTCAGATCCAAAC

Coding sequence (CDS)

CTTGCTTTTGTTGAATATTATGTGCAGGTGTATCCTCTCTTTGCTGCAGTTGGTGTGGCTGTTGGCATCTGTGGGATGCAGCTTGTTAGAAACATAACCACCAACCCTGAAGTCAGGGTTATCAAGGAGAAGAGAGCTGCAGGAGTGCTTGACAACTTTGAAGAAGGTGAAAAGTATGCTGAACATGGCCTCAGGAAGTTCCTCAGAACACGATCCCCTCAGATTATGCCTTCCATCAACAAATTCTTCTCAGATCCAAAC

Protein sequence

LAFVEYYVQVYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRAAGVLDNFEEGEKYAEHGLRKFLRTRSPQIMPSINKFFSDPN

Homology

[Close]

BLAST of MS000958 vs. NCBI nr
Match: XP_022131738.1 (uncharacterized protein LOC111004829 [Momordica charantia])

HSP 1 Score: 160.2 bits (404), Expect = 7.9e-36
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 9  QVYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRAAGVLDNFEEGEKYAEHGLRKFL 68
          +VYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRAAGVLDNFEEGEKYAEHGLRKFL
Sbjct: 11 EVYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRAAGVLDNFEEGEKYAEHGLRKFL 70

Query: 69 RTRSPQIMPSINKFFSDPN 88
          RTRSPQIMPSINKFFSDPN
Sbjct: 71 RTRSPQIMPSINKFFSDPN 89

[Close]

BLAST of MS000958 vs. NCBI nr
Match: XP_038885463.1 (uncharacterized protein LOC120075838 [Benincasa hispida])

HSP 1 Score: 155.6 bits (392), Expect = 1.9e-34
Identity = 75/79 (94.94%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 9  QVYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRAAGVLDNFEEGEKYAEHGLRKFL 68
          +VYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKR AGVLDN+EEGEKYAEHGLRKFL
Sbjct: 11 EVYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRTAGVLDNYEEGEKYAEHGLRKFL 70

Query: 69 RTRSPQIMPSINKFFSDPN 88
          RTR PQIMPSINKFFSDPN
Sbjct: 71 RTRPPQIMPSINKFFSDPN 89

[Close]

BLAST of MS000958 vs. NCBI nr
Match: XP_022997548.1 (uncharacterized protein LOC111492441 [Cucurbita maxima])

HSP 1 Score: 153.7 bits (387), Expect = 7.4e-34
Identity = 74/79 (93.67%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 9   QVYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRAAGVLDNFEEGEKYAEHGLRKFL 68
           +VYPLFA VGVAVGICGMQLVRNITTNPEVRV KE+RAAGVLDNFEEGEKYAEHGLRKFL
Sbjct: 29  EVYPLFATVGVAVGICGMQLVRNITTNPEVRVTKERRAAGVLDNFEEGEKYAEHGLRKFL 88

Query: 69  RTRSPQIMPSINKFFSDPN 88
           RTR PQIMPSINKFFSDPN
Sbjct: 89  RTRPPQIMPSINKFFSDPN 107

[Close]

BLAST of MS000958 vs. NCBI nr
Match: XP_004142944.1 (uncharacterized protein LOC101222643 [Cucumis sativus] >KGN62359.1 hypothetical protein Csa_018775 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 7.4e-34
Identity = 74/79 (93.67%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 9  QVYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRAAGVLDNFEEGEKYAEHGLRKFL 68
          +VYPLFA+VGVAVGIC MQLVRNITTNPEVRVIKE+RAAGVLDNFEEGEKYAEHGLRKFL
Sbjct: 11 EVYPLFASVGVAVGICAMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEKYAEHGLRKFL 70

Query: 69 RTRSPQIMPSINKFFSDPN 88
          RTR PQIMPSINKFFSDPN
Sbjct: 71 RTRPPQIMPSINKFFSDPN 89

[Close]

BLAST of MS000958 vs. NCBI nr
Match: XP_022961943.1 (uncharacterized protein LOC111462563 [Cucurbita moschata])

HSP 1 Score: 153.7 bits (387), Expect = 7.4e-34
Identity = 74/79 (93.67%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 9  QVYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRAAGVLDNFEEGEKYAEHGLRKFL 68
          +VYPLFA VGVAVGICGMQLVRNITTNPEVRV KE+RAAGVLDNFEEGEKYAEHGLRKFL
Sbjct: 11 EVYPLFATVGVAVGICGMQLVRNITTNPEVRVTKERRAAGVLDNFEEGEKYAEHGLRKFL 70

Query: 69 RTRSPQIMPSINKFFSDPN 88
          RTR PQIMPSINKFFSDPN
Sbjct: 71 RTRPPQIMPSINKFFSDPN 89

[Close]

BLAST of MS000958 vs. ExPASy TrEMBL
Match: A0A6J1BUB6 (uncharacterized protein LOC111004829 OS=Momordica charantia OX=3673 GN=LOC111004829 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 3.8e-36
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 9  QVYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRAAGVLDNFEEGEKYAEHGLRKFL 68
          +VYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRAAGVLDNFEEGEKYAEHGLRKFL
Sbjct: 11 EVYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRAAGVLDNFEEGEKYAEHGLRKFL 70

Query: 69 RTRSPQIMPSINKFFSDPN 88
          RTRSPQIMPSINKFFSDPN
Sbjct: 71 RTRSPQIMPSINKFFSDPN 89

[Close]

BLAST of MS000958 vs. ExPASy TrEMBL
Match: A0A6J1KE88 (uncharacterized protein LOC111492441 OS=Cucurbita maxima OX=3661 GN=LOC111492441 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.6e-34
Identity = 74/79 (93.67%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 9   QVYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRAAGVLDNFEEGEKYAEHGLRKFL 68
           +VYPLFA VGVAVGICGMQLVRNITTNPEVRV KE+RAAGVLDNFEEGEKYAEHGLRKFL
Sbjct: 29  EVYPLFATVGVAVGICGMQLVRNITTNPEVRVTKERRAAGVLDNFEEGEKYAEHGLRKFL 88

Query: 69  RTRSPQIMPSINKFFSDPN 88
           RTR PQIMPSINKFFSDPN
Sbjct: 89  RTRPPQIMPSINKFFSDPN 107

[Close]

BLAST of MS000958 vs. ExPASy TrEMBL
Match: A0A0A0LMX7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G350420 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.6e-34
Identity = 74/79 (93.67%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 9  QVYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRAAGVLDNFEEGEKYAEHGLRKFL 68
          +VYPLFA+VGVAVGIC MQLVRNITTNPEVRVIKE+RAAGVLDNFEEGEKYAEHGLRKFL
Sbjct: 11 EVYPLFASVGVAVGICAMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEKYAEHGLRKFL 70

Query: 69 RTRSPQIMPSINKFFSDPN 88
          RTR PQIMPSINKFFSDPN
Sbjct: 71 RTRPPQIMPSINKFFSDPN 89

[Close]

BLAST of MS000958 vs. ExPASy TrEMBL
Match: A0A6J1HDB5 (uncharacterized protein LOC111462563 OS=Cucurbita moschata OX=3662 GN=LOC111462563 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.6e-34
Identity = 74/79 (93.67%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 9  QVYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRAAGVLDNFEEGEKYAEHGLRKFL 68
          +VYPLFA VGVAVGICGMQLVRNITTNPEVRV KE+RAAGVLDNFEEGEKYAEHGLRKFL
Sbjct: 11 EVYPLFATVGVAVGICGMQLVRNITTNPEVRVTKERRAAGVLDNFEEGEKYAEHGLRKFL 70

Query: 69 RTRSPQIMPSINKFFSDPN 88
          RTR PQIMPSINKFFSDPN
Sbjct: 71 RTRPPQIMPSINKFFSDPN 89

[Close]

BLAST of MS000958 vs. ExPASy TrEMBL
Match: A0A1S4DVM4 (uncharacterized protein LOC107990723 OS=Cucumis melo OX=3656 GN=LOC107990723 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 8.0e-34
Identity = 74/79 (93.67%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 9  QVYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRAAGVLDNFEEGEKYAEHGLRKFL 68
          +VYPLFA+VGVAVGIC MQLVRNITTNPEVRVIKE+RAAGVLDNFEEGEKYAEHGLRKFL
Sbjct: 11 EVYPLFASVGVAVGICVMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEKYAEHGLRKFL 70

Query: 69 RTRSPQIMPSINKFFSDPN 88
          RTR PQIMPSINKFFSDPN
Sbjct: 71 RTRPPQIMPSINKFFSDPN 89

[Close]

BLAST of MS000958 vs. TAIR 10
Match: AT3G48140.1 (B12D protein )

HSP 1 Score: 117.5 bits (293), Expect = 5.5e-27
Identity = 54/78 (69.23%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 9  QVYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRAAGVLDNFEEGEKYAEHGLRKFL 68
          +VYPLFAA GVAVGIC   L+RNIT NPEVR  KE RAAG+LDN  EGEKY E+ LRKF+
Sbjct: 9  EVYPLFAATGVAVGICAFSLIRNITGNPEVRCTKENRAAGILDNHAEGEKYKENFLRKFV 68

Query: 69 RTRSPQIMPSINKFFSDP 87
          R + P+IMP +NKFF+DP
Sbjct: 69 RNKKPEIMPGLNKFFTDP 86

[Close]

BLAST of MS000958 vs. TAIR 10
Match: AT3G29970.1 (B12D protein )

HSP 1 Score: 92.8 bits (229), Expect = 1.4e-19
Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 9  QVYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRAAGVLDNFEEGEKYAEHGLRKFL 68
          +VYPL  A+G    +   QL RN   NP+ R+ KE R  G+L+N +EGEKYA+H  RK+L
Sbjct: 8  EVYPLLGAMGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQHNFRKYL 67

Query: 69 RTRSPQIMPSINKFFS 85
          RTR PQ+MPS+N+FFS
Sbjct: 68 RTRQPQVMPSLNRFFS 83

The following BLAST results are available for this feature:

BLAST of MS000958 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131738.1	7.9e-36	98.73	uncharacterized protein LOC111004829 [Momordica charantia]	[more]
XP_038885463.1	1.9e-34	94.94	uncharacterized protein LOC120075838 [Benincasa hispida]	[more]
XP_022997548.1	7.4e-34	93.67	uncharacterized protein LOC111492441 [Cucurbita maxima]	[more]
XP_004142944.1	7.4e-34	93.67	uncharacterized protein LOC101222643 [Cucumis sativus] >KGN62359.1 hypothetical ...	[more]
XP_022961943.1	7.4e-34	93.67	uncharacterized protein LOC111462563 [Cucurbita moschata]	[more]

BLAST of MS000958 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS000958 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BUB6	3.8e-36	98.73	uncharacterized protein LOC111004829 OS=Momordica charantia OX=3673 GN=LOC111004...	[more]
A0A6J1KE88	3.6e-34	93.67	uncharacterized protein LOC111492441 OS=Cucurbita maxima OX=3661 GN=LOC111492441...	[more]
A0A0A0LMX7	3.6e-34	93.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G350420 PE=4 SV=1	[more]
A0A6J1HDB5	3.6e-34	93.67	uncharacterized protein LOC111462563 OS=Cucurbita moschata OX=3662 GN=LOC1114625...	[more]
A0A1S4DVM4	8.0e-34	93.67	uncharacterized protein LOC107990723 OS=Cucumis melo OX=3656 GN=LOC107990723 PE=...	[more]

BLAST of MS000958 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48140.1	5.5e-27	69.23	B12D protein	[more]
AT3G29970.1	1.4e-19	53.95	B12D protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010530	NADH-ubiquinone reductase complex 1 MLRQ subunit	PFAM	PF06522	B12D	coord: 9..74 e-value: 3.1E-23 score: 81.3
None	No IPR available	PANTHER	PTHR33417:SF13	OS07G0274700 PROTEIN	coord: 9..86
None	No IPR available	PANTHER	PTHR33417	G-BOX BINDING PROTEIN	coord: 9..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000958.1	MS000958.1	mRNA