MS000947 (gene) Bitter gourd (TR) v1

Overview


Name	MS000947
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein HHL1, chloroplastic isoform X2
Location	scaffold36: 409660 .. 411670 (-)
RNA-Seq Expression	MS000947
Synteny	MS000947

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTCGCCATGTCCCTCAACGCTCTGGTTCGACTCCCCCTCTCGAATTCGAGGCTACAAGACGATGGACTCGTCCGGCACTCGCTCTTATCGGCCAGAACGACGCAGAAGCCTGAGCAGAGGCATCGGCACCGGCACACTTTCGTGGTGGAAGCCAAAGGCAAAAAAGGGATGCAAGCTCGTCAGTTTCAAAGGGCTGCGCCTCCACCGCTCCCCAAGATTGAAGACGACGGCAATCCCAAATTCGTTATCTTCATCCGTATGGCCAATGTTTGTTCCCTATCCTTTCGAATACATACAGCTTTATTTTTATTTTTTACTTTTCAGTCTAGTTTCTCTCTGTTGATTAATTCTTTGCTCGTGGAATTGTGAGATTTGGGGTGACTTGATGAACTATGTGTAAACTGTGTTTGTGGATCTTAACTCGAGATTCAATGTGAAGTGAATTGGAAAGTAAAATTGCCTTAGGCTCTTGATTTTTCCCAACCTGGAATTGAGAAATTCATCCTTCTTCATTTCATCACAGGTTTCTTTGATAAGAAGAAGCGAAAATCACTTATGTTACTACTATCGTAACTTCTCACTACTCAGAAACTTCCAACTACTCATAATAACTACTCACTATTACTTAAAATTAGGAATTATAAAGAGCATGTCATTAGCCACTTATTGAATAGCTAACATATTGTAGTTTCTAAATTCTTTCTTTATCGATATTTGTTGTGTGATATGCCATCGAAAGAAGTTTATTATTAACTTGAAATCCCAAAACTGTTTTCTGAATAACAGGATTTCCGTTGGTTACCCTAAAGTTCAATATATTGCAAAAAATTATTGGGAATACCGTATCTTTTTCATCATCCCCTTTTACGTTTATTTATGCAGGTTTATCTATGGTACCCGCTGAGTCTTATAAATGGTGGCACGACCGCCAAAATCATGGTTGCAGCAAAAGATAATTTTCTTGGCAAATATATCTATAAAGACACTCTGGCTAGGAACCTTGCTGCTGTTATTTACCGTGTAAGGTTCAATTATCATCCTTTTTTTTAAAAAAAATTCATCTGTAAAGAAGTTACTGTCTAACAGAGAAGACGATTATTGAAGATATTTTTCTCTATTATCTTATTCTTGATGCATTGTGATAAGCCGCCCATTATTGGTAAGTATAAGAGAAAGGGAAAACAAGTATAAGGGAGTTAACACGCTGCTGTGATGAGGGAATTTACCTTAAGAGAGTGTTTTTGTTCTTTTGGAGTTACTTATGAATTCTGTTAGTTGGTTGCCACAAATTCTATCCATTGAGAAAAATAGTTAATTATACACTTTCTGTCAATTTGCTTTTGCAAAGATTACTAGATTCTCTAACCTAGAACAATTTAATTCTAAGCTCTCTTTAAGCTACTAACGGTTGATCTACCAATCAATAGGATGAAAAGGAGATACAGAAGACGGCATTTAAACAGTTTCGTGTGTTGCGGACAGCTACAGAATTCAGATATGGCTACAAGCTTGTGGTAATGTTTTCACACCTTTATCTATGATTCATAGGGGCAATATTTAGATTATACTGCCTGACTGATGAACAACAATGGTATTGACGTAATGATAAATATATACTTACATGCAGGAAAATGGCAATTTGAGATCGGCACTTTCAACCACGGATGTAATTGAGGTAAGAATTGGATTTTCTAGCTCTGCATTTGTTCTCTTTTACTAGTACAGGATTGAGAATGTAAGTCCTTGAACACCATGTGGTAATCTTTGAAACGAACGTAGTTCTGTAGTAACTTGTGTCAGTTAGTCAGATTTGCAACTAGATCGTCTAGTTTCCTAACATTGTTTCTGAATCCAATCTTAGCTTCCAACTCAAGACCAGCTGAAGACAGTTCTCGATAAAGTTAAGGACTTCTTTGGAGATGCAAAGGACTCATTCGGCAAACTCACTGCACTAGGTTCGCTCGAAGGTGAGGAGTCAGATGAGAACTCTACAGAAAAGGCCAAG

mRNA sequence

ATGGAGGTCGCCATGTCCCTCAACGCTCTGGTTCGACTCCCCCTCTCGAATTCGAGGCTACAAGACGATGGACTCGTCCGGCACTCGCTCTTATCGGCCAGAACGACGCAGAAGCCTGAGCAGAGGCATCGGCACCGGCACACTTTCGTGGTGGAAGCCAAAGGCAAAAAAGGGATGCAAGCTCGTCAGTTTCAAAGGGCTGCGCCTCCACCGCTCCCCAAGATTGAAGACGACGGCAATCCCAAATTCGTTATCTTCATCCGTATGGCCAATGTTTATCTATGGTACCCGCTGAGTCTTATAAATGGTGGCACGACCGCCAAAATCATGGTTGCAGCAAAAGATAATTTTCTTGGCAAATATATCTATAAAGACACTCTGGCTAGGAACCTTGCTGCTGTTATTTACCGTGATGAAAAGGAGATACAGAAGACGGCATTTAAACAGTTTCGTGTGTTGCGGACAGCTACAGAATTCAGATATGGCTACAAGCTTGTGGAAAATGGCAATTTGAGATCGGCACTTTCAACCACGGATGTAATTGAGCTTCCAACTCAAGACCAGCTGAAGACAGTTCTCGATAAAGTTAAGGACTTCTTTGGAGATGCAAAGGACTCATTCGGCAAACTCACTGCACTAGGTTCGCTCGAAGGTGAGGAGTCAGATGAGAACTCTACAGAAAAGGCCAAG

Coding sequence (CDS)

ATGGAGGTCGCCATGTCCCTCAACGCTCTGGTTCGACTCCCCCTCTCGAATTCGAGGCTACAAGACGATGGACTCGTCCGGCACTCGCTCTTATCGGCCAGAACGACGCAGAAGCCTGAGCAGAGGCATCGGCACCGGCACACTTTCGTGGTGGAAGCCAAAGGCAAAAAAGGGATGCAAGCTCGTCAGTTTCAAAGGGCTGCGCCTCCACCGCTCCCCAAGATTGAAGACGACGGCAATCCCAAATTCGTTATCTTCATCCGTATGGCCAATGTTTATCTATGGTACCCGCTGAGTCTTATAAATGGTGGCACGACCGCCAAAATCATGGTTGCAGCAAAAGATAATTTTCTTGGCAAATATATCTATAAAGACACTCTGGCTAGGAACCTTGCTGCTGTTATTTACCGTGATGAAAAGGAGATACAGAAGACGGCATTTAAACAGTTTCGTGTGTTGCGGACAGCTACAGAATTCAGATATGGCTACAAGCTTGTGGAAAATGGCAATTTGAGATCGGCACTTTCAACCACGGATGTAATTGAGCTTCCAACTCAAGACCAGCTGAAGACAGTTCTCGATAAAGTTAAGGACTTCTTTGGAGATGCAAAGGACTCATTCGGCAAACTCACTGCACTAGGTTCGCTCGAAGGTGAGGAGTCAGATGAGAACTCTACAGAAAAGGCCAAG

Protein sequence

MEVAMSLNALVRLPLSNSRLQDDGLVRHSLLSARTTQKPEQRHRHRHTFVVEAKGKKGMQARQFQRAAPPPLPKIEDDGNPKFVIFIRMANVYLWYPLSLINGGTTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYKLVENGNLRSALSTTDVIELPTQDQLKTVLDKVKDFFGDAKDSFGKLTALGSLEGEESDENSTEKAK

Homology

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BLAST of MS000947 vs. NCBI nr
Match: XP_022131326.1 (protein HHL1, chloroplastic isoform X2 [Momordica charantia])

HSP 1 Score: 445.7 bits (1145), Expect = 2.5e-121
Identity = 229/230 (99.57%), Postives = 229/230 (99.57%), Query Frame = 0


Query: 1   MEVAMSLNALVRLPLSNSRLQDDGLVRHSLLSARTTQKPEQRHRHRHTFVVEAKGKKGMQ 60
           MEVAMSLNALVRLPLSNSRLQDDGLVRHSLLSARTTQKPEQRHRH HTFVVEAKGKKGMQ
Sbjct: 1   MEVAMSLNALVRLPLSNSRLQDDGLVRHSLLSARTTQKPEQRHRHGHTFVVEAKGKKGMQ 60

Query: 61  ARQFQRAAPPPLPKIEDDGNPKFVIFIRMANVYLWYPLSLINGGTTAKIMVAAKDNFLGK 120
           ARQFQRAAPPPLPKIEDDGNPKFVIFIRMANVYLWYPLSLINGGTTAKIMVAAKDNFLGK
Sbjct: 61  ARQFQRAAPPPLPKIEDDGNPKFVIFIRMANVYLWYPLSLINGGTTAKIMVAAKDNFLGK 120

Query: 121 YIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYKLVENGNLRSALSTTDV 180
           YIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYKLVENGNLRSALSTTDV
Sbjct: 121 YIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYKLVENGNLRSALSTTDV 180

Query: 181 IELPTQDQLKTVLDKVKDFFGDAKDSFGKLTALGSLEGEESDENSTEKAK 231
           IELPTQDQLKTVLDKVKDFFGDAKDSFGKLTALGSLEGEESDENSTEKAK
Sbjct: 181 IELPTQDQLKTVLDKVKDFFGDAKDSFGKLTALGSLEGEESDENSTEKAK 230

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BLAST of MS000947 vs. NCBI nr
Match: XP_022131325.1 (protein HHL1, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 445.7 bits (1145), Expect = 2.5e-121
Identity = 229/230 (99.57%), Postives = 229/230 (99.57%), Query Frame = 0


Query: 1   MEVAMSLNALVRLPLSNSRLQDDGLVRHSLLSARTTQKPEQRHRHRHTFVVEAKGKKGMQ 60
           MEVAMSLNALVRLPLSNSRLQDDGLVRHSLLSARTTQKPEQRHRH HTFVVEAKGKKGMQ
Sbjct: 1   MEVAMSLNALVRLPLSNSRLQDDGLVRHSLLSARTTQKPEQRHRHGHTFVVEAKGKKGMQ 60

Query: 61  ARQFQRAAPPPLPKIEDDGNPKFVIFIRMANVYLWYPLSLINGGTTAKIMVAAKDNFLGK 120
           ARQFQRAAPPPLPKIEDDGNPKFVIFIRMANVYLWYPLSLINGGTTAKIMVAAKDNFLGK
Sbjct: 61  ARQFQRAAPPPLPKIEDDGNPKFVIFIRMANVYLWYPLSLINGGTTAKIMVAAKDNFLGK 120

Query: 121 YIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYKLVENGNLRSALSTTDV 180
           YIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYKLVENGNLRSALSTTDV
Sbjct: 121 YIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYKLVENGNLRSALSTTDV 180

Query: 181 IELPTQDQLKTVLDKVKDFFGDAKDSFGKLTALGSLEGEESDENSTEKAK 231
           IELPTQDQLKTVLDKVKDFFGDAKDSFGKLTALGSLEGEESDENSTEKAK
Sbjct: 181 IELPTQDQLKTVLDKVKDFFGDAKDSFGKLTALGSLEGEESDENSTEKAK 230

[Close]

BLAST of MS000947 vs. NCBI nr
Match: XP_038884174.1 (protein HHL1, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 415.6 bits (1067), Expect = 2.8e-112
Identity = 216/230 (93.91%), Postives = 220/230 (95.65%), Query Frame = 0


Query: 1   MEVAMSLNALVRLPLSNSRLQDDGLVRHSLLSARTTQKPEQRHRHRHTFVVEAKGKKGMQ 60
           MEVAMSLNALVR+PLSNS+LQ+DGLVRHSL SART QKPEQ  RHRHT VVEAKGKKGMQ
Sbjct: 1   MEVAMSLNALVRIPLSNSKLQEDGLVRHSLFSARTMQKPEQ--RHRHTLVVEAKGKKGMQ 60

Query: 61  ARQFQRAAPPPLPKIEDDGNPKFVIFIRMANVYLWYPLSLINGGTTAKIMVAAKDNFLGK 120
           ARQ QR APPPLPKIEDDGNPKFVIFIRMANVYLWYPLSLINGGTTAKIMVAAKDNFLGK
Sbjct: 61  ARQSQRPAPPPLPKIEDDGNPKFVIFIRMANVYLWYPLSLINGGTTAKIMVAAKDNFLGK 120

Query: 121 YIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYKLVENGNLRSALSTTDV 180
           YIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYKLVENGNLRSALSTTDV
Sbjct: 121 YIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYKLVENGNLRSALSTTDV 180

Query: 181 IELPTQDQLKTVLDKVKDFFGDAKDSFGKLTALGSLEGEESDENSTEKAK 231
           IELPTQDQLKTVLDKVKDFFGDAK+SFGKLTALGS EGEESDE S EKAK
Sbjct: 181 IELPTQDQLKTVLDKVKDFFGDAKESFGKLTALGSPEGEESDEESNEKAK 228

[Close]

BLAST of MS000947 vs. NCBI nr
Match: XP_038884175.1 (protein HHL1, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 415.6 bits (1067), Expect = 2.8e-112
Identity = 216/230 (93.91%), Postives = 220/230 (95.65%), Query Frame = 0


Query: 1   MEVAMSLNALVRLPLSNSRLQDDGLVRHSLLSARTTQKPEQRHRHRHTFVVEAKGKKGMQ 60
           MEVAMSLNALVR+PLSNS+LQ+DGLVRHSL SART QKPEQ  RHRHT VVEAKGKKGMQ
Sbjct: 1   MEVAMSLNALVRIPLSNSKLQEDGLVRHSLFSARTMQKPEQ--RHRHTLVVEAKGKKGMQ 60

Query: 61  ARQFQRAAPPPLPKIEDDGNPKFVIFIRMANVYLWYPLSLINGGTTAKIMVAAKDNFLGK 120
           ARQ QR APPPLPKIEDDGNPKFVIFIRMANVYLWYPLSLINGGTTAKIMVAAKDNFLGK
Sbjct: 61  ARQSQRPAPPPLPKIEDDGNPKFVIFIRMANVYLWYPLSLINGGTTAKIMVAAKDNFLGK 120

Query: 121 YIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYKLVENGNLRSALSTTDV 180
           YIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYKLVENGNLRSALSTTDV
Sbjct: 121 YIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYKLVENGNLRSALSTTDV 180

Query: 181 IELPTQDQLKTVLDKVKDFFGDAKDSFGKLTALGSLEGEESDENSTEKAK 231
           IELPTQDQLKTVLDKVKDFFGDAK+SFGKLTALGS EGEESDE S EKAK
Sbjct: 181 IELPTQDQLKTVLDKVKDFFGDAKESFGKLTALGSPEGEESDEESNEKAK 228

[Close]

BLAST of MS000947 vs. NCBI nr
Match: XP_022997358.1 (protein HHL1, chloroplastic-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 413.7 bits (1062), Expect = 1.0e-111
Identity = 213/230 (92.61%), Postives = 222/230 (96.52%), Query Frame = 0


Query: 1   MEVAMSLNALVRLPLSNSRLQDDGLVRHSLLSARTTQKPEQRHRHRHTFVVEAKGKKGMQ 60
           MEVAMSLNALVRLPLSNS+L +DG VRHSL S+RT QKPE+  RHRHTFVVEAKGKKGMQ
Sbjct: 1   MEVAMSLNALVRLPLSNSKLAEDGRVRHSLFSSRTVQKPER--RHRHTFVVEAKGKKGMQ 60

Query: 61  ARQFQRAAPPPLPKIEDDGNPKFVIFIRMANVYLWYPLSLINGGTTAKIMVAAKDNFLGK 120
           AR+FQ+AAPPPLPKIEDDGNPKFVIFIR A+VYLWYPLSLINGGTTAKIMVAAKDNFLGK
Sbjct: 61  ARRFQKAAPPPLPKIEDDGNPKFVIFIRTADVYLWYPLSLINGGTTAKIMVAAKDNFLGK 120

Query: 121 YIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYKLVENGNLRSALSTTDV 180
           YIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYK+VENGNLRSALSTTDV
Sbjct: 121 YIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYKIVENGNLRSALSTTDV 180

Query: 181 IELPTQDQLKTVLDKVKDFFGDAKDSFGKLTALGSLEGEESDENSTEKAK 231
           IELPTQDQLKTVLDKVKDFFGDAK+SFGKLTALGSLEGEESDENS EKAK
Sbjct: 181 IELPTQDQLKTVLDKVKDFFGDAKESFGKLTALGSLEGEESDENSEEKAK 228

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BLAST of MS000947 vs. ExPASy Swiss-Prot
Match: Q8LDL0 (Protein HHL1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=HHL1 PE=1 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 4.3e-92
Identity = 176/231 (76.19%), Postives = 199/231 (86.15%), Query Frame = 0


Query: 1   MEVAMSLNALVRLPLSNS-RLQDDGLVRHSLLSARTTQKPEQRHRHRHTFVVEAKGKKGM 60
           MEV+MSLNAL RLPL N+ R ++ GL RHSL S+RT  +     + R  FVVEAKGKKGM
Sbjct: 1   MEVSMSLNALTRLPLKNTGRFEEVGLARHSLFSSRTACRETAVQQRRMVFVVEAKGKKGM 60

Query: 61  QARQFQRAAPPPLPKIEDDGNPKFVIFIRMANVYLWYPLSLINGGTTAKIMVAAKDNFLG 120
            ARQ+QR  PPP+PKIEDDGNP+FVIFIRMANVYLWYPLS+I GGTTAKIMVAAKDN LG
Sbjct: 61  AARQYQR-TPPPMPKIEDDGNPRFVIFIRMANVYLWYPLSIIAGGTTAKIMVAAKDNLLG 120

Query: 121 KYIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYKLVENGNLRSALSTTD 180
           KYIYKDT+ARN+AAVIYRDEKEIQKTA KQ RVLRTATEFRYGYKLVENGN+R+ALST+D
Sbjct: 121 KYIYKDTIARNIAAVIYRDEKEIQKTAIKQHRVLRTATEFRYGYKLVENGNMRAALSTSD 180

Query: 181 VIELPTQDQLKTVLDKVKDFFGDAKDSFGKLTALGSLEGEESDENSTEKAK 231
           VIELPTQDQLKTV DKVKD+FGDAK+SFGKL++L     E+++E S EKAK
Sbjct: 181 VIELPTQDQLKTVFDKVKDYFGDAKESFGKLSSLNPGSDEKTEETSDEKAK 230

[Close]

BLAST of MS000947 vs. ExPASy TrEMBL
Match: A0A6J1BPD0 (protein HHL1, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111004583 PE=4 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 1.2e-121
Identity = 229/230 (99.57%), Postives = 229/230 (99.57%), Query Frame = 0


Query: 1   MEVAMSLNALVRLPLSNSRLQDDGLVRHSLLSARTTQKPEQRHRHRHTFVVEAKGKKGMQ 60
           MEVAMSLNALVRLPLSNSRLQDDGLVRHSLLSARTTQKPEQRHRH HTFVVEAKGKKGMQ
Sbjct: 1   MEVAMSLNALVRLPLSNSRLQDDGLVRHSLLSARTTQKPEQRHRHGHTFVVEAKGKKGMQ 60

Query: 61  ARQFQRAAPPPLPKIEDDGNPKFVIFIRMANVYLWYPLSLINGGTTAKIMVAAKDNFLGK 120
           ARQFQRAAPPPLPKIEDDGNPKFVIFIRMANVYLWYPLSLINGGTTAKIMVAAKDNFLGK
Sbjct: 61  ARQFQRAAPPPLPKIEDDGNPKFVIFIRMANVYLWYPLSLINGGTTAKIMVAAKDNFLGK 120

Query: 121 YIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYKLVENGNLRSALSTTDV 180
           YIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYKLVENGNLRSALSTTDV
Sbjct: 121 YIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYKLVENGNLRSALSTTDV 180

Query: 181 IELPTQDQLKTVLDKVKDFFGDAKDSFGKLTALGSLEGEESDENSTEKAK 231
           IELPTQDQLKTVLDKVKDFFGDAKDSFGKLTALGSLEGEESDENSTEKAK
Sbjct: 181 IELPTQDQLKTVLDKVKDFFGDAKDSFGKLTALGSLEGEESDENSTEKAK 230

[Close]

BLAST of MS000947 vs. ExPASy TrEMBL
Match: A0A6J1BP87 (protein HHL1, chloroplastic isoform X2 OS=Momordica charantia OX=3673 GN=LOC111004583 PE=4 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 1.2e-121
Identity = 229/230 (99.57%), Postives = 229/230 (99.57%), Query Frame = 0


Query: 1   MEVAMSLNALVRLPLSNSRLQDDGLVRHSLLSARTTQKPEQRHRHRHTFVVEAKGKKGMQ 60
           MEVAMSLNALVRLPLSNSRLQDDGLVRHSLLSARTTQKPEQRHRH HTFVVEAKGKKGMQ
Sbjct: 1   MEVAMSLNALVRLPLSNSRLQDDGLVRHSLLSARTTQKPEQRHRHGHTFVVEAKGKKGMQ 60

Query: 61  ARQFQRAAPPPLPKIEDDGNPKFVIFIRMANVYLWYPLSLINGGTTAKIMVAAKDNFLGK 120
           ARQFQRAAPPPLPKIEDDGNPKFVIFIRMANVYLWYPLSLINGGTTAKIMVAAKDNFLGK
Sbjct: 61  ARQFQRAAPPPLPKIEDDGNPKFVIFIRMANVYLWYPLSLINGGTTAKIMVAAKDNFLGK 120

Query: 121 YIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYKLVENGNLRSALSTTDV 180
           YIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYKLVENGNLRSALSTTDV
Sbjct: 121 YIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYKLVENGNLRSALSTTDV 180

Query: 181 IELPTQDQLKTVLDKVKDFFGDAKDSFGKLTALGSLEGEESDENSTEKAK 231
           IELPTQDQLKTVLDKVKDFFGDAKDSFGKLTALGSLEGEESDENSTEKAK
Sbjct: 181 IELPTQDQLKTVLDKVKDFFGDAKDSFGKLTALGSLEGEESDENSTEKAK 230

[Close]

BLAST of MS000947 vs. ExPASy TrEMBL
Match: A0A6J1KDM2 (protein HHL1, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111492298 PE=4 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 5.1e-112
Identity = 213/230 (92.61%), Postives = 222/230 (96.52%), Query Frame = 0


Query: 1   MEVAMSLNALVRLPLSNSRLQDDGLVRHSLLSARTTQKPEQRHRHRHTFVVEAKGKKGMQ 60
           MEVAMSLNALVRLPLSNS+L +DG VRHSL S+RT QKPE+  RHRHTFVVEAKGKKGMQ
Sbjct: 1   MEVAMSLNALVRLPLSNSKLAEDGRVRHSLFSSRTVQKPER--RHRHTFVVEAKGKKGMQ 60

Query: 61  ARQFQRAAPPPLPKIEDDGNPKFVIFIRMANVYLWYPLSLINGGTTAKIMVAAKDNFLGK 120
           AR+FQ+AAPPPLPKIEDDGNPKFVIFIR A+VYLWYPLSLINGGTTAKIMVAAKDNFLGK
Sbjct: 61  ARRFQKAAPPPLPKIEDDGNPKFVIFIRTADVYLWYPLSLINGGTTAKIMVAAKDNFLGK 120

Query: 121 YIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYKLVENGNLRSALSTTDV 180
           YIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYK+VENGNLRSALSTTDV
Sbjct: 121 YIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYKIVENGNLRSALSTTDV 180

Query: 181 IELPTQDQLKTVLDKVKDFFGDAKDSFGKLTALGSLEGEESDENSTEKAK 231
           IELPTQDQLKTVLDKVKDFFGDAK+SFGKLTALGSLEGEESDENS EKAK
Sbjct: 181 IELPTQDQLKTVLDKVKDFFGDAKESFGKLTALGSLEGEESDENSEEKAK 228

[Close]

BLAST of MS000947 vs. ExPASy TrEMBL
Match: A0A6J1K4S0 (protein HHL1, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492298 PE=4 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 5.1e-112
Identity = 213/230 (92.61%), Postives = 222/230 (96.52%), Query Frame = 0


Query: 1   MEVAMSLNALVRLPLSNSRLQDDGLVRHSLLSARTTQKPEQRHRHRHTFVVEAKGKKGMQ 60
           MEVAMSLNALVRLPLSNS+L +DG VRHSL S+RT QKPE+  RHRHTFVVEAKGKKGMQ
Sbjct: 1   MEVAMSLNALVRLPLSNSKLAEDGRVRHSLFSSRTVQKPER--RHRHTFVVEAKGKKGMQ 60

Query: 61  ARQFQRAAPPPLPKIEDDGNPKFVIFIRMANVYLWYPLSLINGGTTAKIMVAAKDNFLGK 120
           AR+FQ+AAPPPLPKIEDDGNPKFVIFIR A+VYLWYPLSLINGGTTAKIMVAAKDNFLGK
Sbjct: 61  ARRFQKAAPPPLPKIEDDGNPKFVIFIRTADVYLWYPLSLINGGTTAKIMVAAKDNFLGK 120

Query: 121 YIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYKLVENGNLRSALSTTDV 180
           YIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYK+VENGNLRSALSTTDV
Sbjct: 121 YIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYKIVENGNLRSALSTTDV 180

Query: 181 IELPTQDQLKTVLDKVKDFFGDAKDSFGKLTALGSLEGEESDENSTEKAK 231
           IELPTQDQLKTVLDKVKDFFGDAK+SFGKLTALGSLEGEESDENS EKAK
Sbjct: 181 IELPTQDQLKTVLDKVKDFFGDAKESFGKLTALGSLEGEESDENSEEKAK 228

[Close]

BLAST of MS000947 vs. ExPASy TrEMBL
Match: A0A6J1HBV5 (protein HHL1, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111462663 PE=4 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 2.5e-111
Identity = 212/230 (92.17%), Postives = 221/230 (96.09%), Query Frame = 0


Query: 1   MEVAMSLNALVRLPLSNSRLQDDGLVRHSLLSARTTQKPEQRHRHRHTFVVEAKGKKGMQ 60
           MEVAMSLNALVRLPLSNS+L +DG VRHSL S+RT  KPE+  RHRHTFVVEAKGKKGMQ
Sbjct: 1   MEVAMSLNALVRLPLSNSKLAEDGRVRHSLFSSRTVPKPER--RHRHTFVVEAKGKKGMQ 60

Query: 61  ARQFQRAAPPPLPKIEDDGNPKFVIFIRMANVYLWYPLSLINGGTTAKIMVAAKDNFLGK 120
           AR+FQ+AAPPPLPKIEDDGNPKFVIFIR A+VYLWYPLSLINGGTTAKIMVAAKDNFLGK
Sbjct: 61  ARRFQKAAPPPLPKIEDDGNPKFVIFIRTADVYLWYPLSLINGGTTAKIMVAAKDNFLGK 120

Query: 121 YIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYKLVENGNLRSALSTTDV 180
           YIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYK+VENGNLRSALSTTDV
Sbjct: 121 YIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYKIVENGNLRSALSTTDV 180

Query: 181 IELPTQDQLKTVLDKVKDFFGDAKDSFGKLTALGSLEGEESDENSTEKAK 231
           IELPTQDQLKTVLDKVKDFFGDAK+SFGKLTALGSLEGEESDENS EKAK
Sbjct: 181 IELPTQDQLKTVLDKVKDFFGDAKESFGKLTALGSLEGEESDENSEEKAK 228

[Close]

BLAST of MS000947 vs. TAIR 10
Match: AT1G67700.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 49 Blast hits to 49 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). )

HSP 1 Score: 339.0 bits (868), Expect = 3.1e-93
Identity = 176/231 (76.19%), Postives = 199/231 (86.15%), Query Frame = 0


Query: 1   MEVAMSLNALVRLPLSNS-RLQDDGLVRHSLLSARTTQKPEQRHRHRHTFVVEAKGKKGM 60
           MEV+MSLNAL RLPL N+ R ++ GL RHSL S+RT  +     + R  FVVEAKGKKGM
Sbjct: 1   MEVSMSLNALTRLPLKNTGRFEEVGLARHSLFSSRTACRETAVQQRRMVFVVEAKGKKGM 60

Query: 61  QARQFQRAAPPPLPKIEDDGNPKFVIFIRMANVYLWYPLSLINGGTTAKIMVAAKDNFLG 120
            ARQ+QR  PPP+PKIEDDGNP+FVIFIRMANVYLWYPLS+I GGTTAKIMVAAKDN LG
Sbjct: 61  AARQYQR-TPPPMPKIEDDGNPRFVIFIRMANVYLWYPLSIIAGGTTAKIMVAAKDNLLG 120

Query: 121 KYIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYKLVENGNLRSALSTTD 180
           KYIYKDT+ARN+AAVIYRDEKEIQKTA KQ RVLRTATEFRYGYKLVENGN+R+ALST+D
Sbjct: 121 KYIYKDTIARNIAAVIYRDEKEIQKTAIKQHRVLRTATEFRYGYKLVENGNMRAALSTSD 180

Query: 181 VIELPTQDQLKTVLDKVKDFFGDAKDSFGKLTALGSLEGEESDENSTEKAK 231
           VIELPTQDQLKTV DKVKD+FGDAK+SFGKL++L     E+++E S EKAK
Sbjct: 181 VIELPTQDQLKTVFDKVKDYFGDAKESFGKLSSLNPGSDEKTEETSDEKAK 230

[Close]

BLAST of MS000947 vs. TAIR 10
Match: AT1G67700.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 49 Blast hits to 49 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). )

HSP 1 Score: 339.0 bits (868), Expect = 3.1e-93
Identity = 176/231 (76.19%), Postives = 199/231 (86.15%), Query Frame = 0


Query: 1   MEVAMSLNALVRLPLSNS-RLQDDGLVRHSLLSARTTQKPEQRHRHRHTFVVEAKGKKGM 60
           MEV+MSLNAL RLPL N+ R ++ GL RHSL S+RT  +     + R  FVVEAKGKKGM
Sbjct: 1   MEVSMSLNALTRLPLKNTGRFEEVGLARHSLFSSRTACRETAVQQRRMVFVVEAKGKKGM 60

Query: 61  QARQFQRAAPPPLPKIEDDGNPKFVIFIRMANVYLWYPLSLINGGTTAKIMVAAKDNFLG 120
            ARQ+QR  PPP+PKIEDDGNP+FVIFIRMANVYLWYPLS+I GGTTAKIMVAAKDN LG
Sbjct: 61  AARQYQR-TPPPMPKIEDDGNPRFVIFIRMANVYLWYPLSIIAGGTTAKIMVAAKDNLLG 120

Query: 121 KYIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYKLVENGNLRSALSTTD 180
           KYIYKDT+ARN+AAVIYRDEKEIQKTA KQ RVLRTATEFRYGYKLVENGN+R+ALST+D
Sbjct: 121 KYIYKDTIARNIAAVIYRDEKEIQKTAIKQHRVLRTATEFRYGYKLVENGNMRAALSTSD 180

Query: 181 VIELPTQDQLKTVLDKVKDFFGDAKDSFGKLTALGSLEGEESDENSTEKAK 231
           VIELPTQDQLKTV DKVKD+FGDAK+SFGKL++L     E+++E S EKAK
Sbjct: 181 VIELPTQDQLKTVFDKVKDYFGDAKESFGKLSSLNPGSDEKTEETSDEKAK 230

[Close]

BLAST of MS000947 vs. TAIR 10
Match: AT1G67700.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. )

HSP 1 Score: 332.8 bits (852), Expect = 2.2e-91
Identity = 175/231 (75.76%), Postives = 198/231 (85.71%), Query Frame = 0


Query: 1   MEVAMSLNALVRLPLSNS-RLQDDGLVRHSLLSARTTQKPEQRHRHRHTFVVEAKGKKGM 60
           MEV+MSLNAL RLPL N+ R ++ GL RHSL S+RT  +     + R  FVVEAKGKKGM
Sbjct: 1   MEVSMSLNALTRLPLKNTGRFEEVGLARHSLFSSRTACRETAVQQRRMVFVVEAKGKKGM 60

Query: 61  QARQFQRAAPPPLPKIEDDGNPKFVIFIRMANVYLWYPLSLINGGTTAKIMVAAKDNFLG 120
            ARQ+QR  PPP+PKIEDDGNP+FVIFIRMANVYLWYPLS+I GGTTAKIMVAAKDN LG
Sbjct: 61  AARQYQR-TPPPMPKIEDDGNPRFVIFIRMANVYLWYPLSIIAGGTTAKIMVAAKDNLLG 120

Query: 121 KYIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYKLVENGNLRSALSTTD 180
           KYIYKDT+ARN+AAVIYRDEKEIQKTA KQ RVLRTATEFRYGYKL ENGN+R+ALST+D
Sbjct: 121 KYIYKDTIARNIAAVIYRDEKEIQKTAIKQHRVLRTATEFRYGYKL-ENGNMRAALSTSD 180

Query: 181 VIELPTQDQLKTVLDKVKDFFGDAKDSFGKLTALGSLEGEESDENSTEKAK 231
           VIELPTQDQLKTV DKVKD+FGDAK+SFGKL++L     E+++E S EKAK
Sbjct: 181 VIELPTQDQLKTVFDKVKDYFGDAKESFGKLSSLNPGSDEKTEETSDEKAK 229

The following BLAST results are available for this feature:

BLAST of MS000947 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131326.1	2.5e-121	99.57	protein HHL1, chloroplastic isoform X2 [Momordica charantia]	[more]
XP_022131325.1	2.5e-121	99.57	protein HHL1, chloroplastic isoform X1 [Momordica charantia]	[more]
XP_038884174.1	2.8e-112	93.91	protein HHL1, chloroplastic isoform X1 [Benincasa hispida]	[more]
XP_038884175.1	2.8e-112	93.91	protein HHL1, chloroplastic isoform X2 [Benincasa hispida]	[more]
XP_022997358.1	1.0e-111	92.61	protein HHL1, chloroplastic-like isoform X2 [Cucurbita maxima]	[more]

BLAST of MS000947 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LDL0	4.3e-92	76.19	Protein HHL1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=HHL1 PE=1 SV=1	[more]

BLAST of MS000947 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BPD0	1.2e-121	99.57	protein HHL1, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1BP87	1.2e-121	99.57	protein HHL1, chloroplastic isoform X2 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1KDM2	5.1e-112	92.61	protein HHL1, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1K4S0	5.1e-112	92.61	protein HHL1, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1HBV5	2.5e-111	92.17	protein HHL1, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]

BLAST of MS000947 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67700.1	3.1e-93	76.19	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G67700.2	3.1e-93	76.19	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G67700.3	2.2e-91	75.76	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR48191	PROTEIN HHL1 CHLOROPLASTIC	coord: 1..229

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000947.1	MS000947.1	mRNA