MS000944 (gene) Bitter gourd (TR) v1

Overview


Name	MS000944
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Two-component response regulator
Location	scaffold36: 401236 .. 401343 (+)
RNA-Seq Expression	MS000944
Synteny	MS000944

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCCTAGATGCGATGCGTTTCCTGTTGGGCTTCGTGTTCTTGTCGTTGATGATGACCCAACGTGGCTGAAAATCCTGGAAAAGATGCTCAAGAAGTGCTCTTATGAA

mRNA sequence

TCTCCTAGATGCGATGCGTTTCCTGTTGGGCTTCGTGTTCTTGTCGTTGATGATGACCCAACGTGGCTGAAAATCCTGGAAAAGATGCTCAAGAAGTGCTCTTATGAA

Coding sequence (CDS)

TCTCCTAGATGCGATGCGTTTCCTGTTGGGCTTCGTGTTCTTGTCGTTGATGATGACCCAACGTGGCTGAAAATCCTGGAAAAGATGCTCAAGAAGTGCTCTTATGAA

Protein sequence

SPRCDAFPVGLRVLVVDDDPTWLKILEKMLKKCSYE

Homology

[Close]

BLAST of MS000944 vs. NCBI nr
Match: XP_022131414.1 (two-component response regulator ARR11 isoform X1 [Momordica charantia])

HSP 1 Score: 80.9 bits (198), Expect = 2.5e-12
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 1  SPRCDAFPVGLRVLVVDDDPTWLKILEKMLKKCSYE 37
          SPRCDAFPVGLRVLVVDDDPTWLKILEKMLKKCSYE
Sbjct: 7  SPRCDAFPVGLRVLVVDDDPTWLKILEKMLKKCSYE 42

[Close]

BLAST of MS000944 vs. NCBI nr
Match: XP_022131415.1 (two-component response regulator ARR11 isoform X2 [Momordica charantia])

HSP 1 Score: 80.9 bits (198), Expect = 2.5e-12
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 1  SPRCDAFPVGLRVLVVDDDPTWLKILEKMLKKCSYE 37
          SPRCDAFPVGLRVLVVDDDPTWLKILEKMLKKCSYE
Sbjct: 7  SPRCDAFPVGLRVLVVDDDPTWLKILEKMLKKCSYE 42

[Close]

BLAST of MS000944 vs. NCBI nr
Match: KAF8390576.1 (hypothetical protein HHK36_025103 [Tetracentron sinense])

HSP 1 Score: 76.6 bits (187), Expect = 4.8e-11
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 1  SPRCDAFPVGLRVLVVDDDPTWLKILEKMLKKCSYE 37
          SPR DAFP+GLRVLVVDDDPTWLKILEKMLKKCSYE
Sbjct: 7  SPRIDAFPIGLRVLVVDDDPTWLKILEKMLKKCSYE 42

[Close]

BLAST of MS000944 vs. NCBI nr
Match: XP_008444405.1 (PREDICTED: two-component response regulator ARR11 [Cucumis melo] >KAA0061037.1 two-component response regulator ARR11 [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 4.8e-11
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 1  SPRCDAFPVGLRVLVVDDDPTWLKILEKMLKKCSYE 37
          SPR DAFP+GLRVLVVDDDPTWLKILEKMLKKCSYE
Sbjct: 7  SPRSDAFPIGLRVLVVDDDPTWLKILEKMLKKCSYE 42

[Close]

BLAST of MS000944 vs. NCBI nr
Match: XP_023546496.1 (two-component response regulator ARR11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 75.9 bits (185), Expect = 8.1e-11
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 1  SPRCDAFPVGLRVLVVDDDPTWLKILEKMLKKCSYE 37
          SPR DAFPVGLRVLVVDDDPTWL+ILEKMLKKCSYE
Sbjct: 9  SPRSDAFPVGLRVLVVDDDPTWLRILEKMLKKCSYE 44

[Close]

BLAST of MS000944 vs. ExPASy Swiss-Prot
Match: Q5N6V8 (Two-component response regulator ORR26 OS=Oryza sativa subsp. japonica OX=39947 GN=RR26 PE=3 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 1.4e-10
Identity = 29/31 (93.55%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 6  AFPVGLRVLVVDDDPTWLKILEKMLKKCSYE 37
          AFP GLRVLVVDDDPTWLKILEKML+KCSYE
Sbjct: 5  AFPYGLRVLVVDDDPTWLKILEKMLRKCSYE 35

[Close]

BLAST of MS000944 vs. ExPASy Swiss-Prot
Match: Q9FXD6 (Two-component response regulator ARR11 OS=Arabidopsis thaliana OX=3702 GN=ARR11 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.2e-10
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 8  PVGLRVLVVDDDPTWLKILEKMLKKCSYE 37
          PVGLRVLVVDDDPTWLKILEKMLKKCSYE
Sbjct: 8  PVGLRVLVVDDDPTWLKILEKMLKKCSYE 36

[Close]

BLAST of MS000944 vs. ExPASy Swiss-Prot
Match: A2X1N2 (Two-component response regulator ORR24 OS=Oryza sativa subsp. indica OX=39946 GN=RR24 PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.8e-06
Identity = 22/31 (70.97%), Postives = 25/31 (80.65%), Query Frame = 0


Query: 5  DAFPVGLRVLVVDDDPTWLKILEKMLKKCSY 36
          D FPVG+RVL VDDDPT LKILE +L +C Y
Sbjct: 23 DQFPVGMRVLAVDDDPTCLKILENLLLRCQY 53

[Close]

BLAST of MS000944 vs. ExPASy Swiss-Prot
Match: Q6H805 (Two-component response regulator ORR24 OS=Oryza sativa subsp. japonica OX=39947 GN=RR24 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.8e-06
Identity = 22/31 (70.97%), Postives = 25/31 (80.65%), Query Frame = 0


Query: 5  DAFPVGLRVLVVDDDPTWLKILEKMLKKCSY 36
          D FPVG+RVL VDDDPT LKILE +L +C Y
Sbjct: 23 DQFPVGMRVLAVDDDPTCLKILENLLLRCQY 53

[Close]

BLAST of MS000944 vs. ExPASy Swiss-Prot
Match: Q940D0 (Two-component response regulator ARR1 OS=Arabidopsis thaliana OX=3702 GN=ARR1 PE=1 SV=2)

HSP 1 Score: 50.8 bits (120), Expect = 3.7e-06
Identity = 23/32 (71.88%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 5  DAFPVGLRVLVVDDDPTWLKILEKMLKKCSYE 37
          + FP GLRVLVVDDDPT L ILE+ML+ C YE
Sbjct: 31 EMFPSGLRVLVVDDDPTCLMILERMLRTCLYE 62

[Close]

BLAST of MS000944 vs. ExPASy TrEMBL
Match: A0A6J1BQ66 (Two-component response regulator OS=Momordica charantia OX=3673 GN=LOC111004635 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-12
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 1  SPRCDAFPVGLRVLVVDDDPTWLKILEKMLKKCSYE 37
          SPRCDAFPVGLRVLVVDDDPTWLKILEKMLKKCSYE
Sbjct: 7  SPRCDAFPVGLRVLVVDDDPTWLKILEKMLKKCSYE 42

[Close]

BLAST of MS000944 vs. ExPASy TrEMBL
Match: A0A6J1BPN3 (two-component response regulator ARR11 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111004635 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-12
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 1  SPRCDAFPVGLRVLVVDDDPTWLKILEKMLKKCSYE 37
          SPRCDAFPVGLRVLVVDDDPTWLKILEKMLKKCSYE
Sbjct: 7  SPRCDAFPVGLRVLVVDDDPTWLKILEKMLKKCSYE 42

[Close]

BLAST of MS000944 vs. ExPASy TrEMBL
Match: A0A5A7V2E4 (Two-component response regulator OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001730 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.3e-11
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 1  SPRCDAFPVGLRVLVVDDDPTWLKILEKMLKKCSYE 37
          SPR DAFP+GLRVLVVDDDPTWLKILEKMLKKCSYE
Sbjct: 7  SPRSDAFPIGLRVLVVDDDPTWLKILEKMLKKCSYE 42

[Close]

BLAST of MS000944 vs. ExPASy TrEMBL
Match: A0A1S3BB23 (Two-component response regulator OS=Cucumis melo OX=3656 GN=LOC103487743 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.3e-11
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 1  SPRCDAFPVGLRVLVVDDDPTWLKILEKMLKKCSYE 37
          SPR DAFP+GLRVLVVDDDPTWLKILEKMLKKCSYE
Sbjct: 7  SPRSDAFPIGLRVLVVDDDPTWLKILEKMLKKCSYE 42

[Close]

BLAST of MS000944 vs. ExPASy TrEMBL
Match: A0A6J1KC92 (two-component response regulator ARR11-like OS=Cucurbita maxima OX=3661 GN=LOC111491989 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.9e-11
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 1  SPRCDAFPVGLRVLVVDDDPTWLKILEKMLKKCSYE 37
          SPR DAFPVGLRVLVVDDDPTWL+ILEKMLKKCSYE
Sbjct: 9  SPRSDAFPVGLRVLVVDDDPTWLRILEKMLKKCSYE 44

[Close]

BLAST of MS000944 vs. TAIR 10
Match: AT1G67710.1 (response regulator 11 )

HSP 1 Score: 64.3 bits (155), Expect = 2.3e-11
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 8  PVGLRVLVVDDDPTWLKILEKMLKKCSYE 37
          PVGLRVLVVDDDPTWLKILEKMLKKCSYE
Sbjct: 8  PVGLRVLVVDDDPTWLKILEKMLKKCSYE 36

[Close]

BLAST of MS000944 vs. TAIR 10
Match: AT3G16857.1 (response regulator 1 )

HSP 1 Score: 50.8 bits (120), Expect = 2.6e-07
Identity = 23/32 (71.88%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 5  DAFPVGLRVLVVDDDPTWLKILEKMLKKCSYE 37
          + FP GLRVLVVDDDPT L ILE+ML+ C YE
Sbjct: 31 EMFPSGLRVLVVDDDPTCLMILERMLRTCLYE 62

[Close]

BLAST of MS000944 vs. TAIR 10
Match: AT3G16857.2 (response regulator 1 )

HSP 1 Score: 50.8 bits (120), Expect = 2.6e-07
Identity = 23/32 (71.88%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 5  DAFPVGLRVLVVDDDPTWLKILEKMLKKCSYE 37
          + FP GLRVLVVDDDPT L ILE+ML+ C YE
Sbjct: 31 EMFPSGLRVLVVDDDPTCLMILERMLRTCLYE 62

[Close]

BLAST of MS000944 vs. TAIR 10
Match: AT2G25180.1 (response regulator 12 )

HSP 1 Score: 48.5 bits (114), Expect = 1.3e-06
Identity = 21/31 (67.74%), Postives = 24/31 (77.42%), Query Frame = 0


Query: 5  DAFPVGLRVLVVDDDPTWLKILEKMLKKCSY 36
          D FPVG+RVL VDDD T LKILE +L+ C Y
Sbjct: 11 DQFPVGMRVLAVDDDQTCLKILESLLRHCQY 41

[Close]

BLAST of MS000944 vs. TAIR 10
Match: AT4G16110.1 (response regulator 2 )

HSP 1 Score: 47.8 bits (112), Expect = 2.2e-06
Identity = 22/31 (70.97%), Postives = 23/31 (74.19%), Query Frame = 0


Query: 5  DAFPVGLRVLVVDDDPTWLKILEKMLKKCSY 36
          D FP  LRVLVVDDDPT L ILE+ML  C Y
Sbjct: 22 DPFPANLRVLVVDDDPTCLMILERMLMTCLY 52

The following BLAST results are available for this feature:

BLAST of MS000944 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131414.1	2.5e-12	100.00	two-component response regulator ARR11 isoform X1 [Momordica charantia]	[more]
XP_022131415.1	2.5e-12	100.00	two-component response regulator ARR11 isoform X2 [Momordica charantia]	[more]
KAF8390576.1	4.8e-11	94.44	hypothetical protein HHK36_025103 [Tetracentron sinense]	[more]
XP_008444405.1	4.8e-11	94.44	PREDICTED: two-component response regulator ARR11 [Cucumis melo] >KAA0061037.1 t...	[more]
XP_023546496.1	8.1e-11	94.44	two-component response regulator ARR11-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS000944 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5N6V8	1.4e-10	93.55	Two-component response regulator ORR26 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q9FXD6	3.2e-10	100.00	Two-component response regulator ARR11 OS=Arabidopsis thaliana OX=3702 GN=ARR11 ...	[more]
A2X1N2	2.8e-06	70.97	Two-component response regulator ORR24 OS=Oryza sativa subsp. indica OX=39946 GN...	[more]
Q6H805	2.8e-06	70.97	Two-component response regulator ORR24 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q940D0	3.7e-06	71.88	Two-component response regulator ARR1 OS=Arabidopsis thaliana OX=3702 GN=ARR1 PE...	[more]

BLAST of MS000944 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BQ66	1.2e-12	100.00	Two-component response regulator OS=Momordica charantia OX=3673 GN=LOC111004635 ...	[more]
A0A6J1BPN3	1.2e-12	100.00	two-component response regulator ARR11 isoform X2 OS=Momordica charantia OX=3673...	[more]
A0A5A7V2E4	2.3e-11	94.44	Two-component response regulator OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A1S3BB23	2.3e-11	94.44	Two-component response regulator OS=Cucumis melo OX=3656 GN=LOC103487743 PE=3 SV...	[more]
A0A6J1KC92	3.9e-11	94.44	two-component response regulator ARR11-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of MS000944 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67710.1	2.3e-11	100.00	response regulator 11	[more]
AT3G16857.1	2.6e-07	71.88	response regulator 1	[more]
AT3G16857.2	2.6e-07	71.88	response regulator 1	[more]
AT2G25180.1	1.3e-06	67.74	response regulator 12	[more]
AT4G16110.1	2.2e-06	70.97	response regulator 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.2300		coord: 2..36 e-value: 2.8E-6 score: 28.8
None	No IPR available	PANTHER	PTHR43874:SF127	TWO-COMPONENT RESPONSE REGULATOR	coord: 1..36
None	No IPR available	PANTHER	PTHR43874	TWO-COMPONENT RESPONSE REGULATOR	coord: 1..36
IPR001789	Signal transduction response regulator, receiver domain	PROSITE	PS50110	RESPONSE_REGULATORY	coord: 12..36 score: 12.821531
IPR011006	CheY-like superfamily	SUPERFAMILY	52172	CheY-like	coord: 10..36

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000944.1	MS000944.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000160	phosphorelay signal transduction system