MS000943 (gene) Bitter gourd (TR) v1

Overview


Name	MS000943
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RING-type domain-containing protein
Location	scaffold36: 395786 .. 397242 (+)
RNA-Seq Expression	MS000943
Synteny	MS000943

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATTACCGGCTAACGAGGTCTTCGTCTTCTTGTAAAGACTCCATGAAAGTCCTCGAAGAAGATGTACAGCGCGCCAATGCTCTGTTAGTATCCCTTTTACCTTCATTCACTATTGAAGTTCTTCAACCCCAACCCCCCCAATTTTAATCTGATTTGGGTCTGTGAATAGGATTGATTTTGATTGAGCTGTGGTGGGTAGTTTATGTGATCTGTTTGGTTTTTCTAATTATCCAAAATCTGGTTTCTGGGTTTGCAGGGCTGCTGCAATTCCAAGAGCCAAACATGGTTCATATCTCCAGATGAAATTGGTTTACAATCATTTGGCTCCTCTCTTTCTGTTTTTGATGCAATGGGTGGATTGTTCCTGCACTTGTATACTTCCCAGATACCTAAATTTCTTCCACATACTCATTTACAAGGCTGGTCTCTCTTTTTCTTGACTTGTTTAATGATATTTGATGATCTTTTTACAGCAGTGGCTTTGTTCTGTCTCGTGAATCATTATAATCTGTCATTTGCTTTCTTCAGGTTTACACTGATGGAAGACCAAACATATCAGCACATGGAAGAAAGGCAACGATTAAAGATTTCTATGGTACATATTTGCCTTCTAAGAATCTGTTTGGGAGACTGGTTTTCAAAATAGTTCTCTGATGCCATTTAGAAAACTGCTTTCAAGGACTAAAGTTGGGCAGTTAGGGTTTTAGTGCAGTTGAAACACTTCACATACATCCATGATTTTAGGAGGAAGAATATGGGCTGTTCTAAAAAAGCAACTGTCAACAAGAGAGAAGAACCTTTTTCCTTATGCTACTTGTTTGAAATCATTAGGCTCTGTAGATTATGGTATTGATATTGTATGATTCTGAGTTTATGATCTTGTTTTGTTTCTAACAAACTTCTTCTTCAGCCGTTATATTGCCATCCCTTCAACGGCTCCAAGCGAACGTTGACGAGCTGGATAGTGCTATAGACAGGCGTGTCAAGGCCGATAATTCCAACGACAAACGAGCTCAAGGAGATGGAAAACTCTCCAATGGTGATTTAGAGAGAGAAGATGAGTGTGGGATTTGCTTAGAACCTTCCACAAAAATGGTGTTGCCAAATTGCTGCCATTCAATGTGCATCAAATGTTACCACAATTGGTAACTAACCACAAAACCTTCCTAAATAATCTCTTGCCCCTTCTGGCTCTTATGCATTTTCCATGATTACTCCAATGCCTATGCTTTTGAATTCATCATAGGAACACGAGATCGGAATCGTGCCCGTTTTGCCGTGGGAGCTTGAGGAGGATCAAATCAGAGGACTTGTGGGTGCTAACTTGCAGCGAAGATGTGGTTGATGCTGAAAAAGTTTCAAAGGAAGATCTCTCACGGTTCTATCTCTATATAAGCAGCTTGCCAAAAGAATATCCAGATGCACTTTTCTTAGTTTATTACGAATACTTGATT

mRNA sequence

ATGTATTACCGGCTAACGAGGTCTTCGTCTTCTTGTAAAGACTCCATGAAAGTCCTCGAAGAAGATGTACAGCGCGCCAATGCTCTGGCTGCTGCAATTCCAAGAGCCAAACATGGTTCATATCTCCAGATGAAATTGGTTTACAATCATTTGGCTCCTCTCTTTCTGTTTTTGATGCAATGGGTGGATTGTTCCTGCACTTGTATACTTCCCAGATACCTAAATTTCTTCCACATACTCATTTACAAGGCTGGTCTCTTCTTGACTTGTTTAATGATATTTGATGATCTTTTTACAGCAGTTTACACTGATGGAAGACCAAACATATCAGCACATGGAAGAAAGGCAACGATTAAAGATTTCTATGCCGTTATATTGCCATCCCTTCAACGGCTCCAAGCGAACGTTGACGAGCTGGATAGTGCTATAGACAGGCGTGTCAAGGCCGATAATTCCAACGACAAACGAGCTCAAGGAGATGGAAAACTCTCCAATGGTGATTTAGAGAGAGAAGATGAGTGTGGGATTTGCTTAGAACCTTCCACAAAAATGGTGTTGCCAAATTGCTGCCATTCAATGTGCATCAAATGTTACCACAATTGGAACACGAGATCGGAATCGTGCCCGTTTTGCCGTGGGAGCTTGAGGAGGATCAAATCAGAGGACTTGTGGGTGCTAACTTGCAGCGAAGATGTGGTTGATGCTGAAAAAGTTTCAAAGGAAGATCTCTCACGGTTCTATCTCTATATAAGCAGCTTGCCAAAAGAATATCCAGATGCACTTTTCTTAGTTTATTACGAATACTTGATT

Coding sequence (CDS)

ATGTATTACCGGCTAACGAGGTCTTCGTCTTCTTGTAAAGACTCCATGAAAGTCCTCGAAGAAGATGTACAGCGCGCCAATGCTCTGGCTGCTGCAATTCCAAGAGCCAAACATGGTTCATATCTCCAGATGAAATTGGTTTACAATCATTTGGCTCCTCTCTTTCTGTTTTTGATGCAATGGGTGGATTGTTCCTGCACTTGTATACTTCCCAGATACCTAAATTTCTTCCACATACTCATTTACAAGGCTGGTCTCTTCTTGACTTGTTTAATGATATTTGATGATCTTTTTACAGCAGTTTACACTGATGGAAGACCAAACATATCAGCACATGGAAGAAAGGCAACGATTAAAGATTTCTATGCCGTTATATTGCCATCCCTTCAACGGCTCCAAGCGAACGTTGACGAGCTGGATAGTGCTATAGACAGGCGTGTCAAGGCCGATAATTCCAACGACAAACGAGCTCAAGGAGATGGAAAACTCTCCAATGGTGATTTAGAGAGAGAAGATGAGTGTGGGATTTGCTTAGAACCTTCCACAAAAATGGTGTTGCCAAATTGCTGCCATTCAATGTGCATCAAATGTTACCACAATTGGAACACGAGATCGGAATCGTGCCCGTTTTGCCGTGGGAGCTTGAGGAGGATCAAATCAGAGGACTTGTGGGTGCTAACTTGCAGCGAAGATGTGGTTGATGCTGAAAAAGTTTCAAAGGAAGATCTCTCACGGTTCTATCTCTATATAAGCAGCTTGCCAAAAGAATATCCAGATGCACTTTTCTTAGTTTATTACGAATACTTGATT

Protein sequence

MYYRLTRSSSSCKDSMKVLEEDVQRANALAAAIPRAKHGSYLQMKLVYNHLAPLFLFLMQWVDCSCTCILPRYLNFFHILIYKAGLFLTCLMIFDDLFTAVYTDGRPNISAHGRKATIKDFYAVILPSLQRLQANVDELDSAIDRRVKADNSNDKRAQGDGKLSNGDLEREDECGICLEPSTKMVLPNCCHSMCIKCYHNWNTRSESCPFCRGSLRRIKSEDLWVLTCSEDVVDAEKVSKEDLSRFYLYISSLPKEYPDALFLVYYEYLI

Homology

[Close]

BLAST of MS000943 vs. NCBI nr
Match: XP_022131399.1 (RING-H2 finger protein ATL47-like [Momordica charantia])

HSP 1 Score: 506.5 bits (1303), Expect = 1.4e-139
Identity = 253/270 (93.70%), Postives = 253/270 (93.70%), Query Frame = 0


Query: 1   MYYRLTRSSSSCKDSMKVLEEDVQRANALAAAIPRAKHGSYLQMKLVYNHLAPLFLFLMQ 60
           MYYRLTRSSSSCKDSMKVLEEDVQRANALAAAIPRAKHGSYLQMKLVYNHLAPLFLFLMQ
Sbjct: 1   MYYRLTRSSSSCKDSMKVLEEDVQRANALAAAIPRAKHGSYLQMKLVYNHLAPLFLFLMQ 60

Query: 61  WVDCSCTCILPRYLNFFHILIYKAGLFLTCLMIFDDLFTAVYTDGRPNISAHGRKATIKD 120
           WVDCSCTCILPRYLNFFHILIYK                 VYTDGRPNISAHGRKATIKD
Sbjct: 61  WVDCSCTCILPRYLNFFHILIYK-----------------VYTDGRPNISAHGRKATIKD 120

Query: 121 FYAVILPSLQRLQANVDELDSAIDRRVKADNSNDKRAQGDGKLSNGDLEREDECGICLEP 180
           FYAVILPSLQRLQANVDELDSAIDRRVKADNSNDKRAQGDGKLSNGDLEREDECGICLEP
Sbjct: 121 FYAVILPSLQRLQANVDELDSAIDRRVKADNSNDKRAQGDGKLSNGDLEREDECGICLEP 180

Query: 181 STKMVLPNCCHSMCIKCYHNWNTRSESCPFCRGSLRRIKSEDLWVLTCSEDVVDAEKVSK 240
           STKMVLPNCCHSMCIKCYHNWNTRSESCPFCRGSLRRIKSEDLWVLTCSEDVVDAEKVSK
Sbjct: 181 STKMVLPNCCHSMCIKCYHNWNTRSESCPFCRGSLRRIKSEDLWVLTCSEDVVDAEKVSK 240

Query: 241 EDLSRFYLYISSLPKEYPDALFLVYYEYLI 271
           EDLSRFYLYISSLPKEYPDALFLVYYEYLI
Sbjct: 241 EDLSRFYLYISSLPKEYPDALFLVYYEYLI 253

[Close]

BLAST of MS000943 vs. NCBI nr
Match: KAA0061039.1 (hypothetical protein E6C27_scaffold501G001750 [Cucumis melo var. makuwa])

HSP 1 Score: 465.3 bits (1196), Expect = 3.6e-127
Identity = 228/270 (84.44%), Postives = 245/270 (90.74%), Query Frame = 0


Query: 1   MYYRLTRSSSSCKDSMKVLEEDVQRANALAAAIPRAKHGSYLQMKLVYNHLAPLFLFLMQ 60
           MYYRL  + SSC DS+KVLEEDV+RANALAAAIPRAKHGSYLQMKLVYN LAP FLFLMQ
Sbjct: 1   MYYRL--AMSSCADSLKVLEEDVRRANALAAAIPRAKHGSYLQMKLVYNQLAPFFLFLMQ 60

Query: 61  WVDCSCTCILPRYLNFFHILIYKAGLFLTCLMIFDDLFTAVYTDGRPNISAHGRKATIKD 120
           W+DCSCTCILPRYLNFFHIL+YKAGL             +VYTDGRPNISAHGRKAT+KD
Sbjct: 61  WLDCSCTCILPRYLNFFHILVYKAGL-------------SVYTDGRPNISAHGRKATVKD 120

Query: 121 FYAVILPSLQRLQANVDELDSAIDRRVKADNSNDKRAQGDGKLSNGDLEREDECGICLEP 180
           FYAVILPSLQRLQANV+E D+A ++  K+DNS+++R QGDGKLSNGDLEREDECGICLEP
Sbjct: 121 FYAVILPSLQRLQANVEEFDNAKEKHAKSDNSSERRIQGDGKLSNGDLEREDECGICLEP 180

Query: 181 STKMVLPNCCHSMCIKCYHNWNTRSESCPFCRGSLRRIKSEDLWVLTCSEDVVDAEKVSK 240
           STKMVLPNCCHSMCIKCYHNWN RSESCPFCRGSL+RIKSEDLWVLTC+EDVVDAEKVSK
Sbjct: 181 STKMVLPNCCHSMCIKCYHNWNMRSESCPFCRGSLKRIKSEDLWVLTCNEDVVDAEKVSK 240

Query: 241 EDLSRFYLYISSLPKEYPDALFLVYYEYLI 271
           EDLSRFYLYISSLPKEYPDALFLVYYEYLI
Sbjct: 241 EDLSRFYLYISSLPKEYPDALFLVYYEYLI 255

[Close]

BLAST of MS000943 vs. NCBI nr
Match: XP_008444404.1 (PREDICTED: uncharacterized protein LOC103487741 [Cucumis melo])

HSP 1 Score: 457.6 bits (1176), Expect = 7.4e-125
Identity = 225/270 (83.33%), Postives = 241/270 (89.26%), Query Frame = 0


Query: 1   MYYRLTRSSSSCKDSMKVLEEDVQRANALAAAIPRAKHGSYLQMKLVYNHLAPLFLFLMQ 60
           MYYRL  + SSC DS+KVLEEDV+RANALAAAIPRAKHGSYLQMKLVYN LAP FLFLMQ
Sbjct: 1   MYYRL--AMSSCADSLKVLEEDVRRANALAAAIPRAKHGSYLQMKLVYNQLAPFFLFLMQ 60

Query: 61  WVDCSCTCILPRYLNFFHILIYKAGLFLTCLMIFDDLFTAVYTDGRPNISAHGRKATIKD 120
           W+DCSCTCILPRYLNFFHIL+YK                 VYTDGRPNISAHGRKAT+KD
Sbjct: 61  WLDCSCTCILPRYLNFFHILVYK-----------------VYTDGRPNISAHGRKATVKD 120

Query: 121 FYAVILPSLQRLQANVDELDSAIDRRVKADNSNDKRAQGDGKLSNGDLEREDECGICLEP 180
           FYAVILPSLQRLQANV+E D+A ++  K+DNS+++R QGDGKLSNGDLEREDECGICLEP
Sbjct: 121 FYAVILPSLQRLQANVEEFDNAKEKHAKSDNSSERRIQGDGKLSNGDLEREDECGICLEP 180

Query: 181 STKMVLPNCCHSMCIKCYHNWNTRSESCPFCRGSLRRIKSEDLWVLTCSEDVVDAEKVSK 240
           STKMVLPNCCHSMCIKCYHNWN RSESCPFCRGSL+RIKSEDLWVLTC+EDVVDAEKVSK
Sbjct: 181 STKMVLPNCCHSMCIKCYHNWNMRSESCPFCRGSLKRIKSEDLWVLTCNEDVVDAEKVSK 240

Query: 241 EDLSRFYLYISSLPKEYPDALFLVYYEYLI 271
           EDLSRFYLYISSLPKEYPDALFLVYYEYLI
Sbjct: 241 EDLSRFYLYISSLPKEYPDALFLVYYEYLI 251

[Close]

BLAST of MS000943 vs. NCBI nr
Match: XP_038885383.1 (E3 ubiquitin-protein ligase AIRP2-like [Benincasa hispida])

HSP 1 Score: 457.2 bits (1175), Expect = 9.7e-125
Identity = 226/270 (83.70%), Postives = 240/270 (88.89%), Query Frame = 0


Query: 1   MYYRLTRSSSSCKDSMKVLEEDVQRANALAAAIPRAKHGSYLQMKLVYNHLAPLFLFLMQ 60
           MYYRL R  SSCKDS+KVLEEDVQ ANALAAAIPRAKHGSYLQMKLVYN LAP FLFLMQ
Sbjct: 1   MYYRLAR--SSCKDSLKVLEEDVQHANALAAAIPRAKHGSYLQMKLVYNQLAPFFLFLMQ 60

Query: 61  WVDCSCTCILPRYLNFFHILIYKAGLFLTCLMIFDDLFTAVYTDGRPNISAHGRKATIKD 120
           W+DCSCTCILPR LNFFHIL+YK                 VYTDGRP+ISAHGRKAT+KD
Sbjct: 61  WLDCSCTCILPRNLNFFHILVYK-----------------VYTDGRPSISAHGRKATVKD 120

Query: 121 FYAVILPSLQRLQANVDELDSAIDRRVKADNSNDKRAQGDGKLSNGDLEREDECGICLEP 180
           FYAVILPSLQRLQAN +E D+A ++RVK+ NS++KR QGDGKLS GDLEREDECGICLEP
Sbjct: 121 FYAVILPSLQRLQANAEEFDNAKEKRVKSGNSSEKRVQGDGKLSKGDLEREDECGICLEP 180

Query: 181 STKMVLPNCCHSMCIKCYHNWNTRSESCPFCRGSLRRIKSEDLWVLTCSEDVVDAEKVSK 240
           STKMVLPNCCHSMCIKCYHNWNTRSESCPFCRGSL+RIKSEDLWVLTC+EDVVDAEKVSK
Sbjct: 181 STKMVLPNCCHSMCIKCYHNWNTRSESCPFCRGSLKRIKSEDLWVLTCNEDVVDAEKVSK 240

Query: 241 EDLSRFYLYISSLPKEYPDALFLVYYEYLI 271
           EDLSRFYLYISSLPKEYPDALFLVYYEYLI
Sbjct: 241 EDLSRFYLYISSLPKEYPDALFLVYYEYLI 251

[Close]

BLAST of MS000943 vs. NCBI nr
Match: XP_004142955.1 (E3 ubiquitin-protein ligase AIRP2 [Cucumis sativus] >KGN62344.1 hypothetical protein Csa_018738 [Cucumis sativus])

HSP 1 Score: 454.1 bits (1167), Expect = 8.2e-124
Identity = 223/270 (82.59%), Postives = 239/270 (88.52%), Query Frame = 0


Query: 1   MYYRLTRSSSSCKDSMKVLEEDVQRANALAAAIPRAKHGSYLQMKLVYNHLAPLFLFLMQ 60
           MYYRL  + SSC DS+KVLEEDV+RAN LAAAIPRAKHGSYLQMKLVYN LAP FLFLMQ
Sbjct: 1   MYYRL--AMSSCSDSLKVLEEDVRRANTLAAAIPRAKHGSYLQMKLVYNQLAPFFLFLMQ 60

Query: 61  WVDCSCTCILPRYLNFFHILIYKAGLFLTCLMIFDDLFTAVYTDGRPNISAHGRKATIKD 120
           W+DCSCTCILPRYLNFFHIL+YK                 VYTDGRPNISAHGRKAT+KD
Sbjct: 61  WLDCSCTCILPRYLNFFHILVYK-----------------VYTDGRPNISAHGRKATVKD 120

Query: 121 FYAVILPSLQRLQANVDELDSAIDRRVKADNSNDKRAQGDGKLSNGDLEREDECGICLEP 180
           FYAVILPSLQRLQA+++E DSA  +  K+DNS+++R QGDGKLSNGDLEREDECGICLEP
Sbjct: 121 FYAVILPSLQRLQADIEEFDSAKKKHAKSDNSSERRIQGDGKLSNGDLEREDECGICLEP 180

Query: 181 STKMVLPNCCHSMCIKCYHNWNTRSESCPFCRGSLRRIKSEDLWVLTCSEDVVDAEKVSK 240
           STKMVLPNCCHSMCIKCYHNWN RSESCPFCRGSL+RIKSEDLWVLTC+EDVVDAEKVSK
Sbjct: 181 STKMVLPNCCHSMCIKCYHNWNMRSESCPFCRGSLKRIKSEDLWVLTCNEDVVDAEKVSK 240

Query: 241 EDLSRFYLYISSLPKEYPDALFLVYYEYLI 271
           EDLSRFYLYISSLPKEYPDALFLVYYEYLI
Sbjct: 241 EDLSRFYLYISSLPKEYPDALFLVYYEYLI 251

[Close]

BLAST of MS000943 vs. ExPASy Swiss-Prot
Match: Q9M022 (E3 ubiquitin-protein ligase AIRP2 OS=Arabidopsis thaliana OX=3702 GN=AIRP2 PE=1 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 2.4e-54
Identity = 112/255 (43.92%), Postives = 145/255 (56.86%), Query Frame = 0


Query: 11  SCKDSMKVLEEDVQRANALAAAIPRAKHGSYLQMKLVYNHLAPLFLFLMQWVDCSCTCIL 70
           S KDS+K LE D+Q AN LA+  P    G Y+QM+L Y+  A LFLFL+QW DC      
Sbjct: 4   SFKDSLKALEADIQFANTLASEYPEEYDGGYVQMRLSYSPAAHLFLFLLQWTDCH----F 63

Query: 71  PRYLNFFHILIYKAGLFLTCLMIFDDLFTAVYTDGRPNISAHGRKATIKDFYAVILPSLQ 130
              L    ILIYKA                 Y DG+  +S H RK +I++FY V+ PSL 
Sbjct: 64  AGALGLLRILIYKA-----------------YVDGKTTMSLHERKTSIREFYDVLFPSLL 123

Query: 131 RLQANVDELDSAIDRRVKADNSNDKRAQGDGKLSNGDLEREDECGICLEPSTKMVLPNCC 190
           +L   + +++    + +       K     GK+S  DLERE+ECGICLE   K+VLP C 
Sbjct: 124 QLHGGITDVEERKQKEICDKRYRKKDRTDKGKMSEIDLEREEECGICLEIRNKVVLPTCN 183

Query: 191 HSMCIKCYHNWNTRSESCPFCRGSLRRIKSEDLWVLTCSEDVVDAEKVSKEDLSRFYLYI 250
           HSMCI CY NW  RS+SCPFCRGSL+R+ S DLW+ TCS ++ D   + KE+L R  +YI
Sbjct: 184 HSMCINCYRNWRARSQSCPFCRGSLKRVNSGDLWIYTCSAEIADLPAIYKENLKRLLIYI 237

Query: 251 SSLPKEYPDALFLVY 266
             LP    D   + Y
Sbjct: 244 DKLPLVTSDPNLVPY 237

[Close]

BLAST of MS000943 vs. ExPASy TrEMBL
Match: A0A6J1BQ55 (RING-H2 finger protein ATL47-like OS=Momordica charantia OX=3673 GN=LOC111004624 PE=4 SV=1)

HSP 1 Score: 506.5 bits (1303), Expect = 6.7e-140
Identity = 253/270 (93.70%), Postives = 253/270 (93.70%), Query Frame = 0


Query: 1   MYYRLTRSSSSCKDSMKVLEEDVQRANALAAAIPRAKHGSYLQMKLVYNHLAPLFLFLMQ 60
           MYYRLTRSSSSCKDSMKVLEEDVQRANALAAAIPRAKHGSYLQMKLVYNHLAPLFLFLMQ
Sbjct: 1   MYYRLTRSSSSCKDSMKVLEEDVQRANALAAAIPRAKHGSYLQMKLVYNHLAPLFLFLMQ 60

Query: 61  WVDCSCTCILPRYLNFFHILIYKAGLFLTCLMIFDDLFTAVYTDGRPNISAHGRKATIKD 120
           WVDCSCTCILPRYLNFFHILIYK                 VYTDGRPNISAHGRKATIKD
Sbjct: 61  WVDCSCTCILPRYLNFFHILIYK-----------------VYTDGRPNISAHGRKATIKD 120

Query: 121 FYAVILPSLQRLQANVDELDSAIDRRVKADNSNDKRAQGDGKLSNGDLEREDECGICLEP 180
           FYAVILPSLQRLQANVDELDSAIDRRVKADNSNDKRAQGDGKLSNGDLEREDECGICLEP
Sbjct: 121 FYAVILPSLQRLQANVDELDSAIDRRVKADNSNDKRAQGDGKLSNGDLEREDECGICLEP 180

Query: 181 STKMVLPNCCHSMCIKCYHNWNTRSESCPFCRGSLRRIKSEDLWVLTCSEDVVDAEKVSK 240
           STKMVLPNCCHSMCIKCYHNWNTRSESCPFCRGSLRRIKSEDLWVLTCSEDVVDAEKVSK
Sbjct: 181 STKMVLPNCCHSMCIKCYHNWNTRSESCPFCRGSLRRIKSEDLWVLTCSEDVVDAEKVSK 240

Query: 241 EDLSRFYLYISSLPKEYPDALFLVYYEYLI 271
           EDLSRFYLYISSLPKEYPDALFLVYYEYLI
Sbjct: 241 EDLSRFYLYISSLPKEYPDALFLVYYEYLI 253

[Close]

BLAST of MS000943 vs. ExPASy TrEMBL
Match: A0A5A7V5Q1 (RING-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001750 PE=4 SV=1)

HSP 1 Score: 465.3 bits (1196), Expect = 1.7e-127
Identity = 228/270 (84.44%), Postives = 245/270 (90.74%), Query Frame = 0


Query: 1   MYYRLTRSSSSCKDSMKVLEEDVQRANALAAAIPRAKHGSYLQMKLVYNHLAPLFLFLMQ 60
           MYYRL  + SSC DS+KVLEEDV+RANALAAAIPRAKHGSYLQMKLVYN LAP FLFLMQ
Sbjct: 1   MYYRL--AMSSCADSLKVLEEDVRRANALAAAIPRAKHGSYLQMKLVYNQLAPFFLFLMQ 60

Query: 61  WVDCSCTCILPRYLNFFHILIYKAGLFLTCLMIFDDLFTAVYTDGRPNISAHGRKATIKD 120
           W+DCSCTCILPRYLNFFHIL+YKAGL             +VYTDGRPNISAHGRKAT+KD
Sbjct: 61  WLDCSCTCILPRYLNFFHILVYKAGL-------------SVYTDGRPNISAHGRKATVKD 120

Query: 121 FYAVILPSLQRLQANVDELDSAIDRRVKADNSNDKRAQGDGKLSNGDLEREDECGICLEP 180
           FYAVILPSLQRLQANV+E D+A ++  K+DNS+++R QGDGKLSNGDLEREDECGICLEP
Sbjct: 121 FYAVILPSLQRLQANVEEFDNAKEKHAKSDNSSERRIQGDGKLSNGDLEREDECGICLEP 180

Query: 181 STKMVLPNCCHSMCIKCYHNWNTRSESCPFCRGSLRRIKSEDLWVLTCSEDVVDAEKVSK 240
           STKMVLPNCCHSMCIKCYHNWN RSESCPFCRGSL+RIKSEDLWVLTC+EDVVDAEKVSK
Sbjct: 181 STKMVLPNCCHSMCIKCYHNWNMRSESCPFCRGSLKRIKSEDLWVLTCNEDVVDAEKVSK 240

Query: 241 EDLSRFYLYISSLPKEYPDALFLVYYEYLI 271
           EDLSRFYLYISSLPKEYPDALFLVYYEYLI
Sbjct: 241 EDLSRFYLYISSLPKEYPDALFLVYYEYLI 255

[Close]

BLAST of MS000943 vs. ExPASy TrEMBL
Match: A0A1S3BB06 (uncharacterized protein LOC103487741 OS=Cucumis melo OX=3656 GN=LOC103487741 PE=4 SV=1)

HSP 1 Score: 457.6 bits (1176), Expect = 3.6e-125
Identity = 225/270 (83.33%), Postives = 241/270 (89.26%), Query Frame = 0


Query: 1   MYYRLTRSSSSCKDSMKVLEEDVQRANALAAAIPRAKHGSYLQMKLVYNHLAPLFLFLMQ 60
           MYYRL  + SSC DS+KVLEEDV+RANALAAAIPRAKHGSYLQMKLVYN LAP FLFLMQ
Sbjct: 1   MYYRL--AMSSCADSLKVLEEDVRRANALAAAIPRAKHGSYLQMKLVYNQLAPFFLFLMQ 60

Query: 61  WVDCSCTCILPRYLNFFHILIYKAGLFLTCLMIFDDLFTAVYTDGRPNISAHGRKATIKD 120
           W+DCSCTCILPRYLNFFHIL+YK                 VYTDGRPNISAHGRKAT+KD
Sbjct: 61  WLDCSCTCILPRYLNFFHILVYK-----------------VYTDGRPNISAHGRKATVKD 120

Query: 121 FYAVILPSLQRLQANVDELDSAIDRRVKADNSNDKRAQGDGKLSNGDLEREDECGICLEP 180
           FYAVILPSLQRLQANV+E D+A ++  K+DNS+++R QGDGKLSNGDLEREDECGICLEP
Sbjct: 121 FYAVILPSLQRLQANVEEFDNAKEKHAKSDNSSERRIQGDGKLSNGDLEREDECGICLEP 180

Query: 181 STKMVLPNCCHSMCIKCYHNWNTRSESCPFCRGSLRRIKSEDLWVLTCSEDVVDAEKVSK 240
           STKMVLPNCCHSMCIKCYHNWN RSESCPFCRGSL+RIKSEDLWVLTC+EDVVDAEKVSK
Sbjct: 181 STKMVLPNCCHSMCIKCYHNWNMRSESCPFCRGSLKRIKSEDLWVLTCNEDVVDAEKVSK 240

Query: 241 EDLSRFYLYISSLPKEYPDALFLVYYEYLI 271
           EDLSRFYLYISSLPKEYPDALFLVYYEYLI
Sbjct: 241 EDLSRFYLYISSLPKEYPDALFLVYYEYLI 251

[Close]

BLAST of MS000943 vs. ExPASy TrEMBL
Match: A0A0A0LMV8 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G350270 PE=4 SV=1)

HSP 1 Score: 454.1 bits (1167), Expect = 4.0e-124
Identity = 223/270 (82.59%), Postives = 239/270 (88.52%), Query Frame = 0


Query: 1   MYYRLTRSSSSCKDSMKVLEEDVQRANALAAAIPRAKHGSYLQMKLVYNHLAPLFLFLMQ 60
           MYYRL  + SSC DS+KVLEEDV+RAN LAAAIPRAKHGSYLQMKLVYN LAP FLFLMQ
Sbjct: 1   MYYRL--AMSSCSDSLKVLEEDVRRANTLAAAIPRAKHGSYLQMKLVYNQLAPFFLFLMQ 60

Query: 61  WVDCSCTCILPRYLNFFHILIYKAGLFLTCLMIFDDLFTAVYTDGRPNISAHGRKATIKD 120
           W+DCSCTCILPRYLNFFHIL+YK                 VYTDGRPNISAHGRKAT+KD
Sbjct: 61  WLDCSCTCILPRYLNFFHILVYK-----------------VYTDGRPNISAHGRKATVKD 120

Query: 121 FYAVILPSLQRLQANVDELDSAIDRRVKADNSNDKRAQGDGKLSNGDLEREDECGICLEP 180
           FYAVILPSLQRLQA+++E DSA  +  K+DNS+++R QGDGKLSNGDLEREDECGICLEP
Sbjct: 121 FYAVILPSLQRLQADIEEFDSAKKKHAKSDNSSERRIQGDGKLSNGDLEREDECGICLEP 180

Query: 181 STKMVLPNCCHSMCIKCYHNWNTRSESCPFCRGSLRRIKSEDLWVLTCSEDVVDAEKVSK 240
           STKMVLPNCCHSMCIKCYHNWN RSESCPFCRGSL+RIKSEDLWVLTC+EDVVDAEKVSK
Sbjct: 181 STKMVLPNCCHSMCIKCYHNWNMRSESCPFCRGSLKRIKSEDLWVLTCNEDVVDAEKVSK 240

Query: 241 EDLSRFYLYISSLPKEYPDALFLVYYEYLI 271
           EDLSRFYLYISSLPKEYPDALFLVYYEYLI
Sbjct: 241 EDLSRFYLYISSLPKEYPDALFLVYYEYLI 251

[Close]

BLAST of MS000943 vs. ExPASy TrEMBL
Match: B7SHK9 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 1.2e-123
Identity = 222/270 (82.22%), Postives = 238/270 (88.15%), Query Frame = 0


Query: 1   MYYRLTRSSSSCKDSMKVLEEDVQRANALAAAIPRAKHGSYLQMKLVYNHLAPLFLFLMQ 60
           MYYRL  + SSC DS+KVLEEDV+RAN LAAAIPRAKHGSYLQMKLVYN LAP FLFLMQ
Sbjct: 1   MYYRL--AMSSCSDSLKVLEEDVRRANTLAAAIPRAKHGSYLQMKLVYNQLAPFFLFLMQ 60

Query: 61  WVDCSCTCILPRYLNFFHILIYKAGLFLTCLMIFDDLFTAVYTDGRPNISAHGRKATIKD 120
           W+DCSCTCILPRYLNFFHIL+YK                 VYTDGRPNISAHGRKAT+KD
Sbjct: 61  WLDCSCTCILPRYLNFFHILVYK-----------------VYTDGRPNISAHGRKATVKD 120

Query: 121 FYAVILPSLQRLQANVDELDSAIDRRVKADNSNDKRAQGDGKLSNGDLEREDECGICLEP 180
           FYAVILPSLQRLQA+++E DSA  +  K+DNS+++R QGDGKLSNGDLEREDECGICLEP
Sbjct: 121 FYAVILPSLQRLQADIEEFDSAKKKHAKSDNSSERRIQGDGKLSNGDLEREDECGICLEP 180

Query: 181 STKMVLPNCCHSMCIKCYHNWNTRSESCPFCRGSLRRIKSEDLWVLTCSEDVVDAEKVSK 240
           STKM LPNCCHSMCIKCYHNWN RSESCPFCRGSL+RIKSEDLWVLTC+EDVVDAEKVSK
Sbjct: 181 STKMALPNCCHSMCIKCYHNWNMRSESCPFCRGSLKRIKSEDLWVLTCNEDVVDAEKVSK 240

Query: 241 EDLSRFYLYISSLPKEYPDALFLVYYEYLI 271
           EDLSRFYLYISSLPKEYPDALFLVYYEYLI
Sbjct: 241 EDLSRFYLYISSLPKEYPDALFLVYYEYLI 251

[Close]

BLAST of MS000943 vs. TAIR 10
Match: AT1G24440.1 (RING/U-box superfamily protein )

HSP 1 Score: 313.5 bits (802), Expect = 1.6e-85
Identity = 164/272 (60.29%), Postives = 198/272 (72.79%), Query Frame = 0


Query: 1   MYYRLTRSSSSCKDSMKVLEEDVQRANALAAAIPRAKHGSYLQMKLVYNHLAPLFLFLMQ 60
           MYY+LT+  SS +DS+K+LE D++ AN LAA IP  K G  LQMKLV ++LAP F+FL+Q
Sbjct: 1   MYYQLTK--SSYRDSLKILEADIEHANGLAAEIPMGKSGVRLQMKLVCSNLAPFFIFLLQ 60

Query: 61  WVDCSCTCILPRYLNFFHILIYKAGLFLTCLMIFDDLFTAVYTDGRPNISAHGRKATIKD 120
           W+D S  C+LPRY +FFHILIYK                 V  DGR N S +GRKATI++
Sbjct: 61  WMDFS--CLLPRYFDFFHILIYK-----------------VRADGRWNRSRYGRKATIRE 120

Query: 121 FYAVILPSLQRLQANVDEL--DSAIDRRVKADNSNDKRAQGDGKLSNGDLEREDECGICL 180
           FY VILPSL+RL  N  +L  +S      KA        +G   +++ DLEREDECGICL
Sbjct: 121 FYGVILPSLERLHINFADLPDESLWYPNPKAITKKQYDIEGSRYMNSIDLEREDECGICL 180

Query: 181 EPSTKMVLPNCCHSMCIKCYHNWNTRSESCPFCRGSLRRIKSEDLWVLTCSEDVVDAEKV 240
           EP TKMVLPNCCH+MCIKCY NWNT+SESCPFCRGS++R+ SEDLWVLTC EDVVD E V
Sbjct: 181 EPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSIKRVNSEDLWVLTCDEDVVDPETV 240

Query: 241 SKEDLSRFYLYISSLPKEYPDALFLVYYEYLI 271
           +KEDL RFYL+I+SLPK+YP+A FLVY EYLI
Sbjct: 241 TKEDLLRFYLHINSLPKDYPEAAFLVYNEYLI 251

[Close]

BLAST of MS000943 vs. TAIR 10
Match: AT1G13195.1 (RING/U-box superfamily protein )

HSP 1 Score: 302.4 bits (773), Expect = 3.7e-82
Identity = 150/262 (57.25%), Postives = 189/262 (72.14%), Query Frame = 0


Query: 8   SSSSCKDSMKVLEEDVQRANALAAAIPRAKHGSYLQMKLVYNHLAPLFLFLMQWVDCSCT 67
           SSSS  +S+KVLE DVQ AN+LA AIP  K+   LQMKLV+++ A L LFL++W+D S +
Sbjct: 12  SSSSYYESLKVLEADVQHANSLAEAIPMGKNNVRLQMKLVHSNFASLLLFLLRWIDLSSS 71

Query: 68  CILPRYLNFFHILIYKAGLFLTCLMIFDDLFTAVYTDGRPNISAHGRKATIKDFYAVILP 127
           C++PRYLN FH+L+YK                 V +DG+P ++ HGRKATI +FY VILP
Sbjct: 72  CLIPRYLNLFHVLVYK-----------------VQSDGQPKLTTHGRKATISEFYGVILP 131

Query: 128 SLQRLQANVDELDSA-IDRRVKADNSNDKRAQGDGKLSNGDLEREDECGICLEPSTKMVL 187
           SLQ L +N+DEL++  I   +K  +    +     + SN  LERE+ECGICLE  TKMVL
Sbjct: 132 SLQLLHSNLDELETTDIGFDLKRLSKKITKEARSSRFSNAGLEREEECGICLETCTKMVL 191

Query: 188 PNCCHSMCIKCYHNWNTRSESCPFCRGSLRRIKSEDLWVLTCSEDVVDAEKVSKEDLSRF 247
           PNCCHSMCIKCY NWN +S+SCPFCRGS++R+ SEDLWVL    DVVD    S+EDL RF
Sbjct: 192 PNCCHSMCIKCYRNWNLKSQSCPFCRGSMKRVNSEDLWVLAGDNDVVDTRTASREDLFRF 251

Query: 248 YLYISSLPKEYPDALFLVYYEY 269
           YLYI+SLPK+YP+ALF+VYYEY
Sbjct: 252 YLYINSLPKDYPEALFVVYYEY 256

[Close]

BLAST of MS000943 vs. TAIR 10
Match: AT1G13195.2 (RING/U-box superfamily protein )

HSP 1 Score: 271.2 bits (692), Expect = 9.2e-73
Identity = 131/233 (56.22%), Postives = 167/233 (71.67%), Query Frame = 0


Query: 37  KHGSYLQMKLVYNHLAPLFLFLMQWVDCSCTCILPRYLNFFHILIYKAGLFLTCLMIFDD 96
           K+   LQMKLV+++ A L LFL++W+D S +C++PRYLN FH+L+YK             
Sbjct: 3   KNNVRLQMKLVHSNFASLLLFLLRWIDLSSSCLIPRYLNLFHVLVYK------------- 62

Query: 97  LFTAVYTDGRPNISAHGRKATIKDFYAVILPSLQRLQANVDELDSA-IDRRVKADNSNDK 156
               V +DG+P ++ HGRKATI +FY VILPSLQ L +N+DEL++  I   +K  +    
Sbjct: 63  ----VQSDGQPKLTTHGRKATISEFYGVILPSLQLLHSNLDELETTDIGFDLKRLSKKIT 122

Query: 157 RAQGDGKLSNGDLEREDECGICLEPSTKMVLPNCCHSMCIKCYHNWNTRSESCPFCRGSL 216
           +     + SN  LERE+ECGICLE  TKMVLPNCCHSMCIKCY NWN +S+SCPFCRGS+
Sbjct: 123 KEARSSRFSNAGLEREEECGICLETCTKMVLPNCCHSMCIKCYRNWNLKSQSCPFCRGSM 182

Query: 217 RRIKSEDLWVLTCSEDVVDAEKVSKEDLSRFYLYISSLPKEYPDALFLVYYEY 269
           +R+ SEDLWVL    DVVD    S+EDL RFYLYI+SLPK+YP+ALF+VYYEY
Sbjct: 183 KRVNSEDLWVLAGDNDVVDTRTASREDLFRFYLYINSLPKDYPEALFVVYYEY 218

[Close]

BLAST of MS000943 vs. TAIR 10
Match: AT5G01520.1 (RING/U-box superfamily protein )

HSP 1 Score: 213.8 bits (543), Expect = 1.7e-55
Identity = 112/255 (43.92%), Postives = 145/255 (56.86%), Query Frame = 0


Query: 11  SCKDSMKVLEEDVQRANALAAAIPRAKHGSYLQMKLVYNHLAPLFLFLMQWVDCSCTCIL 70
           S KDS+K LE D+Q AN LA+  P    G Y+QM+L Y+  A LFLFL+QW DC      
Sbjct: 4   SFKDSLKALEADIQFANTLASEYPEEYDGGYVQMRLSYSPAAHLFLFLLQWTDCH----F 63

Query: 71  PRYLNFFHILIYKAGLFLTCLMIFDDLFTAVYTDGRPNISAHGRKATIKDFYAVILPSLQ 130
              L    ILIYKA                 Y DG+  +S H RK +I++FY V+ PSL 
Sbjct: 64  AGALGLLRILIYKA-----------------YVDGKTTMSLHERKTSIREFYDVLFPSLL 123

Query: 131 RLQANVDELDSAIDRRVKADNSNDKRAQGDGKLSNGDLEREDECGICLEPSTKMVLPNCC 190
           +L   + +++    + +       K     GK+S  DLERE+ECGICLE   K+VLP C 
Sbjct: 124 QLHGGITDVEERKQKEICDKRYRKKDRTDKGKMSEIDLEREEECGICLEIRNKVVLPTCN 183

Query: 191 HSMCIKCYHNWNTRSESCPFCRGSLRRIKSEDLWVLTCSEDVVDAEKVSKEDLSRFYLYI 250
           HSMCI CY NW  RS+SCPFCRGSL+R+ S DLW+ TCS ++ D   + KE+L R  +YI
Sbjct: 184 HSMCINCYRNWRARSQSCPFCRGSLKRVNSGDLWIYTCSAEIADLPAIYKENLKRLLIYI 237

Query: 251 SSLPKEYPDALFLVY 266
             LP    D   + Y
Sbjct: 244 DKLPLVTSDPNLVPY 237

[Close]

BLAST of MS000943 vs. TAIR 10
Match: AT5G58787.1 (RING/U-box superfamily protein )

HSP 1 Score: 205.7 bits (522), Expect = 4.7e-53
Identity = 107/252 (42.46%), Postives = 152/252 (60.32%), Query Frame = 0


Query: 11  SCKDSMKVLEEDVQRANALAAAIPRAKHGSYLQMKLVYNHLAPLFLFLMQWVDCSCTCIL 70
           S KDS+K LE D+Q AN LA   PR K G+ +QM+L Y+  A  FLFL+QW DC     L
Sbjct: 5   SFKDSLKALEADIQHANTLALDYPREKDGARVQMRLSYSPTAQFFLFLVQWTDCK----L 64

Query: 71  PRYLNFFHILIYKAGLFLTCLMIFDDLFTAVYTDGRPNISAHGRKATIKDFYAVILPSLQ 130
             +L    +LIY                   Y DG+  +S + RKA+I++F AVILPSL 
Sbjct: 65  AGFLGLLRVLIY-----------------MTYADGKTTMSVYERKASIREFQAVILPSLS 124

Query: 131 RLQANVDELDSAIDRRVKADNSNDKRAQGDGKLSNGDLEREDECGICLEPSTKMVLPNCC 190
           +LQ  V ++D   D + K       R + + ++S  ++ERE+ECGIC+E ++K+VLPNC 
Sbjct: 125 QLQRGVTDID---DSKQKEVCKMRYRKKDESEMSEIEIEREEECGICMEMNSKVVLPNCT 184

Query: 191 HSMCIKCYHNWNTRSESCPFCRGSLRRIKSEDLWVLTCSEDVVDAEKVSKEDLSRFYLYI 250
           HS+CIKCY +W  RS+SCPFCR SL+R+ S DLW+     D V+   +++E+  R ++YI
Sbjct: 185 HSLCIKCYRDWRGRSQSCPFCRDSLKRVDSGDLWMFLDQNDTVNLTAIARENQKRLFMYI 232

Query: 251 SSLPKEYPDALF 263
             LP   PD ++
Sbjct: 245 EKLPLVVPDQVY 232

The following BLAST results are available for this feature:

BLAST of MS000943 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131399.1	1.4e-139	93.70	RING-H2 finger protein ATL47-like [Momordica charantia]	[more]
KAA0061039.1	3.6e-127	84.44	hypothetical protein E6C27_scaffold501G001750 [Cucumis melo var. makuwa]	[more]
XP_008444404.1	7.4e-125	83.33	PREDICTED: uncharacterized protein LOC103487741 [Cucumis melo]	[more]
XP_038885383.1	9.7e-125	83.70	E3 ubiquitin-protein ligase AIRP2-like [Benincasa hispida]	[more]
XP_004142955.1	8.2e-124	82.59	E3 ubiquitin-protein ligase AIRP2 [Cucumis sativus] >KGN62344.1 hypothetical pro...	[more]

BLAST of MS000943 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M022	2.4e-54	43.92	E3 ubiquitin-protein ligase AIRP2 OS=Arabidopsis thaliana OX=3702 GN=AIRP2 PE=1 ...	[more]

BLAST of MS000943 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BQ55	6.7e-140	93.70	RING-H2 finger protein ATL47-like OS=Momordica charantia OX=3673 GN=LOC111004624...	[more]
A0A5A7V5Q1	1.7e-127	84.44	RING-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A1S3BB06	3.6e-125	83.33	uncharacterized protein LOC103487741 OS=Cucumis melo OX=3656 GN=LOC103487741 PE=...	[more]
A0A0A0LMV8	4.0e-124	82.59	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G350270 P...	[more]
B7SHK9	1.2e-123	82.22	RING-type domain-containing protein OS=Cucumis sativus OX=3659 PE=2 SV=1	[more]

BLAST of MS000943 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G24440.1	1.6e-85	60.29	RING/U-box superfamily protein	[more]
AT1G13195.1	3.7e-82	57.25	RING/U-box superfamily protein	[more]
AT1G13195.2	9.2e-73	56.22	RING/U-box superfamily protein	[more]
AT5G01520.1	1.7e-55	43.92	RING/U-box superfamily protein	[more]
AT5G58787.1	4.7e-53	42.46	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 174..211 e-value: 9.9E-5 score: 31.7
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 172..212 e-value: 8.3E-8 score: 32.5
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 174..212 score: 11.751628
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 144..223 e-value: 2.9E-13 score: 51.0
None	No IPR available	PANTHER	PTHR15315	RING FINGER PROTEIN 41, 151	coord: 7..270
None	No IPR available	PANTHER	PTHR15315:SF35	F21J9.10	coord: 7..270
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 167..217
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 189..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000943.1	MS000943.1	mRNA