MS000939 (gene) Bitter gourd (TR) v1

Overview


Name	MS000939
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	photosystem II core complex proteins psbY, chloroplastic
Location	scaffold36: 375008 .. 375767 (+)
RNA-Seq Expression	MS000939
Synteny	MS000939

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGGTTGGCATTTCCTTGACTTGGCTTCACCTCTGTTCTTCCATCTTCTCATCTCATTACACCTAAATTTGCCAAAACCCAACCTTTCCCTCTTCATTCTGCATCTCCCCTACCTGCCAAAGGCCATCAACAGAAACAAGCAAGTCAACTTCAATGGCAGCCACCATGGCTACAATGGCAGTGCTCAGTGTCAAGTGCACAAGCATCAACTCCAGCAAAAACCACACCACCCCAAAGCCTATCACCAACCCCATCTCTCTCCTCTCTCTTCAGAACCTTCCTAAAGAACTAATCTCGTCAAAAGCTAGTCAAAATCCCAACTTATCAACTTTCCTCTCCAGCACAGCCATTGCTGGAGCTGTCTTCTCAGCCTTCAGCTCATCGGATCCTGCCTTCGCAGCCCAGCAAATTGCGGAGATTGCTGCCGAAGGCGACAACCGCGGCTTAGCCCTTTTGCTACCCCTTATTCCGGCCATAGCATGGGTTTTGTTCAACATACTACAGCCAGCACTCAACCAGATCAACAGAATGCGCAGTGACAAGGGTGTGATAATTGGGTTGGGATTAGGGGGGCTGGCTGCATCAGAGTTTATGTACGCACCTGATGCTTCTGCCACTGAGATCGCCATGATTGCTGATGCTTCCTCAAGTGATGCCAGGGGGCAGCTTCTGCTGTTTGTCATATCACCCGCCATTCTTTGGGTGCTGTACAACATTCTCCAGCCAGCTTTAAATCAACTCAACAGGATGAGGTCCGAG

mRNA sequence

ATTGGTTGGCATTTCCTTGACTTGGCTTCACCTCTGTTCTTCCATCTTCTCATCTCATTACACCTAAATTTGCCAAAACCCAACCTTTCCCTCTTCATTCTGCATCTCCCCACCTGCCAAAGGCCATCAACAGAAACAAGCAAGTCAACTTCAATGGCAGCCACCATGGCTACAATGGCAGTGCTCAGTGTCAAGTGCACAAGCATCAACTCCAGCAAAAACCACACCACCCCAAAGCCTATCACCAACCCCATCTCTCTCCTCTCTCTTCAGAACCTTCCTAAAGAACTAATCTCGTCAAAAGCTAGTCAAAATCCCAACTTATCAACTTTCCTCTCCAGCACAGCCATTGCTGGAGCTGTCTTCTCAGCCTTCAGCTCATCGGATCCTGCCTTCGCAGCCCAGCAAATTGCGGAGATTGCTGCCGAAGGCGACAACCGCGGCTTAGCCCTTTTGCTACCCCTTATTCCGGCCATAGCATGGGTTTTGTTCAACATACTACAGCCAGCACTCAACCAGATCAACAGAATGCGCAGTGACAAGGGTGTGATAATTGGGTTGGGATTAGGGGGGCTGGCTGCATCAGAGTTTATGTACGCACCTGATGCTTCTGCCACTGAGATCGCCATGATTGCTGATGCTTCCTCAAGTGATGCCAGGGGGCAGCTTCTGCTGTTTGTCATATCACCCGCCATTCTTTGGGTGCTGTACAACATTCTCCAGCCAGCTTTAAATCAACTCAACAGGATGAGGTCCGAG

Coding sequence (CDS)

ATTGGTTGGCATTTCCTTGACTTGGCTTCACCTCTGTTCTTCCATCTTCTCATCTCATTACACCTAAATTTGCCAAAACCCAACCTTTCCCTCTTCATTCTGCATCTCCCCACCTGCCAAAGGCCATCAACAGAAACAAGCAAGTCAACTTCAATGGCAGCCACCATGGCTACAATGGCAGTGCTCAGTGTCAAGTGCACAAGCATCAACTCCAGCAAAAACCACACCACCCCAAAGCCTATCACCAACCCCATCTCTCTCCTCTCTCTTCAGAACCTTCCTAAAGAACTAATCTCGTCAAAAGCTAGTCAAAATCCCAACTTATCAACTTTCCTCTCCAGCACAGCCATTGCTGGAGCTGTCTTCTCAGCCTTCAGCTCATCGGATCCTGCCTTCGCAGCCCAGCAAATTGCGGAGATTGCTGCCGAAGGCGACAACCGCGGCTTAGCCCTTTTGCTACCCCTTATTCCGGCCATAGCATGGGTTTTGTTCAACATACTACAGCCAGCACTCAACCAGATCAACAGAATGCGCAGTGACAAGGGTGTGATAATTGGGTTGGGATTAGGGGGGCTGGCTGCATCAGAGTTTATGTACGCACCTGATGCTTCTGCCACTGAGATCGCCATGATTGCTGATGCTTCCTCAAGTGATGCCAGGGGGCAGCTTCTGCTGTTTGTCATATCACCCGCCATTCTTTGGGTGCTGTACAACATTCTCCAGCCAGCTTTAAATCAACTCAACAGGATGAGGTCCGAG

Protein sequence

IGWHFLDLASPLFFHLLISLHLNLPKPNLSLFILHLPTCQRPSTETSKSTSMAATMATMAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTFLSSTAIAGAVFSAFSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLAASEFMYAPDASATEIAMIADASSSDARGQLLLFVISPAILWVLYNILQPALNQLNRMRSE

Homology

[Close]

BLAST of MS000939 vs. NCBI nr
Match: XP_038886078.1 (LOW QUALITY PROTEIN: photosystem II core complex proteins psbY, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 384.4 bits (986), Expect = 7.5e-103
Identity = 216/256 (84.38%), Postives = 228/256 (89.06%), Query Frame = 0


Query: 3   WHFLDLASPLFFHLLISLHLNLPKPNLSLFILHL-PTCQRP----STETSKSTSMAATMA 62
           W +L L SP     L SL   LPKPNLS FILH+ PTCQRP    STETSKSTSMAATMA
Sbjct: 3   WLYLSLPSP----HLXSLQTFLPKPNLSYFILHIPPTCQRPSELSSTETSKSTSMAATMA 62

Query: 63  TMAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTFLSSTAI 122
           TMAVLSVKCTSINS+KNH TPKPI  PISLLSLQNLPK L+SSK++QN NLST LSSTAI
Sbjct: 63  TMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLVSSKSNQNSNLSTILSSTAI 122

Query: 123 AGAVFSAFSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPALNQINRM 182
           AGAVFS  SSSDPAFAAQQIAEIAA+GDNRGLALLLPLIPAIAWVLFNILQPALNQIN+M
Sbjct: 123 AGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINKM 182

Query: 183 RSDKGVIIGLGLGGLAASEFMYAPDASATEIAMIADASSSDARGQLLLFVISPAILWVLY 242
           RSDKGVIIGLGLGGL AS FMYAPDASA+EIAMIADASSSD+RGQLLLFV++PAILWVLY
Sbjct: 183 RSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLY 242

Query: 243 NILQPALNQLNRMRSE 254
           NILQPALNQLNRMRSE
Sbjct: 243 NILQPALNQLNRMRSE 254

[Close]

BLAST of MS000939 vs. NCBI nr
Match: XP_022131700.1 (photosystem II core complex proteins psbY, chloroplastic [Momordica charantia])

HSP 1 Score: 369.4 bits (947), Expect = 2.5e-98
Identity = 201/202 (99.50%), Postives = 201/202 (99.50%), Query Frame = 0


Query: 52  MAATMATMAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTF 111
           MAATMATMAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTF
Sbjct: 1   MAATMATMAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTF 60

Query: 112 LSSTAIAGAVFSAFSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPAL 171
           LSSTAIAGAVFSAFSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPAL
Sbjct: 61  LSSTAIAGAVFSAFSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPAL 120

Query: 172 NQINRMRSDKGVIIGLGLGGLAASEFMYAPDASATEIAMIADASSSDARGQLLLFVISPA 231
           NQINRMRSDKGVIIGLGLGGLAASEFMYAPDASA EIAMIADASSSDARGQLLLFVISPA
Sbjct: 121 NQINRMRSDKGVIIGLGLGGLAASEFMYAPDASAAEIAMIADASSSDARGQLLLFVISPA 180

Query: 232 ILWVLYNILQPALNQLNRMRSE 254
           ILWVLYNILQPALNQLNRMRSE
Sbjct: 181 ILWVLYNILQPALNQLNRMRSE 202

[Close]

BLAST of MS000939 vs. NCBI nr
Match: XP_004142959.3 (photosystem II core complex proteins psbY, chloroplastic [Cucumis sativus])

HSP 1 Score: 365.9 bits (938), Expect = 2.8e-97
Identity = 209/255 (81.96%), Postives = 224/255 (87.84%), Query Frame = 0


Query: 3   WHFLDLASPLFFHLLISLHLNLPKPNLSLFILHL-PTCQRP---STETSKSTSMAATMAT 62
           W +L L+SP     LI+ ++ LPKPNL  FILHL  TCQ P   ST TSKSTSMAATMAT
Sbjct: 3   WLYLCLSSP----HLITPNIVLPKPNLFYFILHLSSTCQSPELSSTVTSKSTSMAATMAT 62

Query: 63  MAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTFLSSTAIA 122
           MAVLSVKCTSINS+K H T K I  PISLLSLQNLPK LISSK++QN NLSTFLSSTAIA
Sbjct: 63  MAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIA 122

Query: 123 GAVFSAFSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMR 182
           GAVF+   SSDPAFAAQQIAEIAA+GDNRGLALLLPLIPA+AWVLFNILQPALNQINRMR
Sbjct: 123 GAVFATLGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMR 182

Query: 183 SDKGVIIGLGLGGLAASEFMYAPDASATEIAMIADASSSDARGQLLLFVISPAILWVLYN 242
           SDKGVIIGLGLGGL AS FMYAPDASA+EIAMIADASSSD+RGQLLLFV++PAILWVLYN
Sbjct: 183 SDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYN 242

Query: 243 ILQPALNQLNRMRSE 254
           ILQPALNQLNRMRSE
Sbjct: 243 ILQPALNQLNRMRSE 253

[Close]

BLAST of MS000939 vs. NCBI nr
Match: XP_008444395.1 (PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Cucumis melo] >KAA0061043.1 photosystem II core complex proteins psbY [Cucumis melo var. makuwa])

HSP 1 Score: 361.7 bits (927), Expect = 5.2e-96
Identity = 207/255 (81.18%), Postives = 223/255 (87.45%), Query Frame = 0


Query: 3   WHFLDLASPLFFHLLISLHLNLPKPNLSLFILHL-PTCQRP---STETSKSTSMAATMAT 62
           W +L L SP     LI+ ++ LPKPN   FILHL  TCQ P   STETSKSTSMAATMAT
Sbjct: 3   WLYLCLPSP----HLITPNIVLPKPNHFYFILHLSSTCQSPELSSTETSKSTSMAATMAT 62

Query: 63  MAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTFLSSTAIA 122
           MAVLSVKCTSINS+K H T K I  PISLLSLQNLPK LISSK+++N NLSTFLSSTAIA
Sbjct: 63  MAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIA 122

Query: 123 GAVFSAFSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMR 182
           GAVF+   +SDPAFAAQQIAEIAA+GDNRGLALLLPLIPAIAWVLFNILQPALNQINRMR
Sbjct: 123 GAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMR 182

Query: 183 SDKGVIIGLGLGGLAASEFMYAPDASATEIAMIADASSSDARGQLLLFVISPAILWVLYN 242
           SDKGVIIGLGLGGL AS FMYAPDASA+EIAMIADASSSD+RGQLLLFV++PAILWVLYN
Sbjct: 183 SDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYN 242

Query: 243 ILQPALNQLNRMRSE 254
           ILQPALNQLNRMRS+
Sbjct: 243 ILQPALNQLNRMRSK 253

[Close]

BLAST of MS000939 vs. NCBI nr
Match: KAG7029231.1 (Photosystem II core complex proteins psbY, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 331.3 bits (848), Expect = 7.5e-87
Identity = 179/202 (88.61%), Postives = 192/202 (95.05%), Query Frame = 0


Query: 52  MAATMATMAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTF 111
           MAATMATMAVLSVKCTSINS++NH TPK I  PISLLSLQNLPK LISSK++ + NLSTF
Sbjct: 1   MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTF 60

Query: 112 LSSTAIAGAVFSAFSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPAL 171
           LSSTAIAGAVFSA SSSDPAFAAQQIA+IAA+GDNRG+ALLLPLIPAIAWVLFNILQPAL
Sbjct: 61  LSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPAL 120

Query: 172 NQINRMRSDKGVIIGLGLGGLAASEFMYAPDASATEIAMIADASSSDARGQLLLFVISPA 231
           NQINRMRSDKGVIIGLGLGGL AS FMYAPDASA+E+AMIADASSSD+RGQLLLFV++PA
Sbjct: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPA 180

Query: 232 ILWVLYNILQPALNQLNRMRSE 254
           ILWVLYNILQPALNQLNRMRSE
Sbjct: 181 ILWVLYNILQPALNQLNRMRSE 202

[Close]

BLAST of MS000939 vs. ExPASy Swiss-Prot
Match: P80470 (Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSBY PE=1 SV=2)

HSP 1 Score: 188.3 bits (477), Expect = 1.0e-46
Identity = 122/209 (58.37%), Postives = 149/209 (71.29%), Query Frame = 0


Query: 52  MAATMA-TMAVLSVKCTSINSSK-NHTTPKPITNPISLLSLQNLPKELISSKASQNPNLS 111
           MAATMA TMAVL+ KC ++N++K   T+PKP + PISL      P  L +SK      LS
Sbjct: 1   MAATMATTMAVLNTKCLTLNTNKTTSTSPKPTSKPISL-----SPLGLSNSKLPM--GLS 60

Query: 112 TFLSSTAIAGAVFSAFSSSDPAFAAQQIAEIAAE---GDNRGLALLLPLIPAIAWVLFNI 171
             +++ AIAGAVF+   S DPAFA QQ+A+IAAE    DNRGLALLLP+IPA+ WVLFNI
Sbjct: 61  PIITAPAIAGAVFATLGSVDPAFAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNI 120

Query: 172 LQPALNQINRMRSD-KGVIIGLGLGGLAASEFMYA-PDASATEIAMIADASSSDARGQLL 231
           LQPALNQIN+MR++ K  I+GLGL GLA S  + A P+A A    +   A  SD RG LL
Sbjct: 121 LQPALNQINKMRNEKKAFIVGLGLSGLATSGLLLATPEAQAASEEI---ARGSDNRGTLL 180

Query: 232 LFVISPAILWVLYNILQPALNQLNRMRSE 254
           L V+ PAI WVL+NILQPALNQLN+MRS+
Sbjct: 181 LLVVLPAIGWVLFNILQPALNQLNKMRSQ 199

[Close]

BLAST of MS000939 vs. ExPASy Swiss-Prot
Match: O49347 (Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBY PE=2 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 8.7e-46
Identity = 112/204 (54.90%), Postives = 141/204 (69.12%), Query Frame = 0


Query: 52  MAATMATMAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTF 111
           MAA MAT    + KC S+N S     PK        L  Q   K  IS      PN+S  
Sbjct: 1   MAAAMAT----ATKCMSLNPS----PPK--------LQNQTKSKPFISLPTPPKPNVSLA 60

Query: 112 LSSTAIAGAVFSAFSSSDPAFAAQQIAEIA---AEGDNRGLALLLPLIPAIAWVLFNILQ 171
           ++STA+AGAVFS+ S S+PA A QQIA++A   A  DNRGLALLLP++PAIAWVL+NILQ
Sbjct: 61  VTSTALAGAVFSSLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQ 120

Query: 172 PALNQINRMRSDKGVIIGLGLGGLAASEFMYAPDASATEIAMIADASSSDARGQLLLFVI 231
           PA+NQ+N+MR  KG+++GLG+GG  A+  +  P   A   A  A A+SSD+RGQLLL V+
Sbjct: 121 PAINQVNKMRESKGIVVGLGIGGGLAASGLLTPPPEAYAAAEAA-AASSDSRGQLLLIVV 180

Query: 232 SPAILWVLYNILQPALNQLNRMRS 253
           +PA+LWVLYNILQPALNQ+N+MRS
Sbjct: 181 TPALLWVLYNILQPALNQINKMRS 187

[Close]

BLAST of MS000939 vs. ExPASy TrEMBL
Match: A0A6J1BQF3 (photosystem II core complex proteins psbY, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111004808 PE=3 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 1.2e-98
Identity = 201/202 (99.50%), Postives = 201/202 (99.50%), Query Frame = 0


Query: 52  MAATMATMAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTF 111
           MAATMATMAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTF
Sbjct: 1   MAATMATMAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTF 60

Query: 112 LSSTAIAGAVFSAFSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPAL 171
           LSSTAIAGAVFSAFSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPAL
Sbjct: 61  LSSTAIAGAVFSAFSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPAL 120

Query: 172 NQINRMRSDKGVIIGLGLGGLAASEFMYAPDASATEIAMIADASSSDARGQLLLFVISPA 231
           NQINRMRSDKGVIIGLGLGGLAASEFMYAPDASA EIAMIADASSSDARGQLLLFVISPA
Sbjct: 121 NQINRMRSDKGVIIGLGLGGLAASEFMYAPDASAAEIAMIADASSSDARGQLLLFVISPA 180

Query: 232 ILWVLYNILQPALNQLNRMRSE 254
           ILWVLYNILQPALNQLNRMRSE
Sbjct: 181 ILWVLYNILQPALNQLNRMRSE 202

[Close]

BLAST of MS000939 vs. ExPASy TrEMBL
Match: A0A0A0LKA1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G350230 PE=3 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 1.3e-97
Identity = 209/255 (81.96%), Postives = 224/255 (87.84%), Query Frame = 0


Query: 3   WHFLDLASPLFFHLLISLHLNLPKPNLSLFILHL-PTCQRP---STETSKSTSMAATMAT 62
           W +L L+SP     LI+ ++ LPKPNL  FILHL  TCQ P   ST TSKSTSMAATMAT
Sbjct: 3   WLYLCLSSP----HLITPNIVLPKPNLFYFILHLSSTCQSPELSSTVTSKSTSMAATMAT 62

Query: 63  MAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTFLSSTAIA 122
           MAVLSVKCTSINS+K H T K I  PISLLSLQNLPK LISSK++QN NLSTFLSSTAIA
Sbjct: 63  MAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIA 122

Query: 123 GAVFSAFSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMR 182
           GAVF+   SSDPAFAAQQIAEIAA+GDNRGLALLLPLIPA+AWVLFNILQPALNQINRMR
Sbjct: 123 GAVFATLGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMR 182

Query: 183 SDKGVIIGLGLGGLAASEFMYAPDASATEIAMIADASSSDARGQLLLFVISPAILWVLYN 242
           SDKGVIIGLGLGGL AS FMYAPDASA+EIAMIADASSSD+RGQLLLFV++PAILWVLYN
Sbjct: 183 SDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYN 242

Query: 243 ILQPALNQLNRMRSE 254
           ILQPALNQLNRMRSE
Sbjct: 243 ILQPALNQLNRMRSE 253

[Close]

BLAST of MS000939 vs. ExPASy TrEMBL
Match: A0A5A7UYJ2 (Photosystem II core complex proteins psbY OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001790 PE=3 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 2.5e-96
Identity = 207/255 (81.18%), Postives = 223/255 (87.45%), Query Frame = 0


Query: 3   WHFLDLASPLFFHLLISLHLNLPKPNLSLFILHL-PTCQRP---STETSKSTSMAATMAT 62
           W +L L SP     LI+ ++ LPKPN   FILHL  TCQ P   STETSKSTSMAATMAT
Sbjct: 3   WLYLCLPSP----HLITPNIVLPKPNHFYFILHLSSTCQSPELSSTETSKSTSMAATMAT 62

Query: 63  MAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTFLSSTAIA 122
           MAVLSVKCTSINS+K H T K I  PISLLSLQNLPK LISSK+++N NLSTFLSSTAIA
Sbjct: 63  MAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIA 122

Query: 123 GAVFSAFSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMR 182
           GAVF+   +SDPAFAAQQIAEIAA+GDNRGLALLLPLIPAIAWVLFNILQPALNQINRMR
Sbjct: 123 GAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMR 182

Query: 183 SDKGVIIGLGLGGLAASEFMYAPDASATEIAMIADASSSDARGQLLLFVISPAILWVLYN 242
           SDKGVIIGLGLGGL AS FMYAPDASA+EIAMIADASSSD+RGQLLLFV++PAILWVLYN
Sbjct: 183 SDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYN 242

Query: 243 ILQPALNQLNRMRSE 254
           ILQPALNQLNRMRS+
Sbjct: 243 ILQPALNQLNRMRSK 253

[Close]

BLAST of MS000939 vs. ExPASy TrEMBL
Match: A0A1S3B9R1 (photosystem II core complex proteins psbY, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487736 PE=3 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 2.5e-96
Identity = 207/255 (81.18%), Postives = 223/255 (87.45%), Query Frame = 0


Query: 3   WHFLDLASPLFFHLLISLHLNLPKPNLSLFILHL-PTCQRP---STETSKSTSMAATMAT 62
           W +L L SP     LI+ ++ LPKPN   FILHL  TCQ P   STETSKSTSMAATMAT
Sbjct: 3   WLYLCLPSP----HLITPNIVLPKPNHFYFILHLSSTCQSPELSSTETSKSTSMAATMAT 62

Query: 63  MAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTFLSSTAIA 122
           MAVLSVKCTSINS+K H T K I  PISLLSLQNLPK LISSK+++N NLSTFLSSTAIA
Sbjct: 63  MAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIA 122

Query: 123 GAVFSAFSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMR 182
           GAVF+   +SDPAFAAQQIAEIAA+GDNRGLALLLPLIPAIAWVLFNILQPALNQINRMR
Sbjct: 123 GAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMR 182

Query: 183 SDKGVIIGLGLGGLAASEFMYAPDASATEIAMIADASSSDARGQLLLFVISPAILWVLYN 242
           SDKGVIIGLGLGGL AS FMYAPDASA+EIAMIADASSSD+RGQLLLFV++PAILWVLYN
Sbjct: 183 SDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYN 242

Query: 243 ILQPALNQLNRMRSE 254
           ILQPALNQLNRMRS+
Sbjct: 243 ILQPALNQLNRMRSK 253

[Close]

BLAST of MS000939 vs. ExPASy TrEMBL
Match: F6GVJ9 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0137g00210 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 8.7e-73
Identity = 156/202 (77.23%), Postives = 174/202 (86.14%), Query Frame = 0


Query: 52  MAATMATMAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTF 111
           MAAT+ATMA+L+ KC SINS KN    KP   PISLLS+QNLPK L + K+S+N NLST 
Sbjct: 1   MAATIATMAMLNAKCLSINSPKNLNLSKPTAKPISLLSIQNLPKGLTTLKSSENQNLSTS 60

Query: 112 LSSTAIAGAVFSAFSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPAL 171
           L+ TAIAGA+FS  SS DPA AAQQIAEI A+GDNRGLALLLP+IPAIAWVLFNILQPAL
Sbjct: 61  LAGTAIAGAIFSTLSSCDPALAAQQIAEI-ADGDNRGLALLLPIIPAIAWVLFNILQPAL 120

Query: 172 NQINRMRSDKGVIIGLGLGGLAASEFMYAPDASATEIAMIADASSSDARGQLLLFVISPA 231
           NQ+N+MRS KGVIIGLGLGGLAAS FM  P ASA+EIA +ADA+SSD RGQLLLFV++PA
Sbjct: 121 NQLNKMRSTKGVIIGLGLGGLAASGFMLTPHASASEIATLADAASSDNRGQLLLFVVTPA 180

Query: 232 ILWVLYNILQPALNQLNRMRSE 254
           ILWVLYNILQPALNQLNRMRSE
Sbjct: 181 ILWVLYNILQPALNQLNRMRSE 201

[Close]

BLAST of MS000939 vs. TAIR 10
Match: AT1G67740.1 (photosystem II BY )

HSP 1 Score: 185.3 bits (469), Expect = 6.2e-47
Identity = 112/204 (54.90%), Postives = 141/204 (69.12%), Query Frame = 0


Query: 52  MAATMATMAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTF 111
           MAA MAT    + KC S+N S     PK        L  Q   K  IS      PN+S  
Sbjct: 1   MAAAMAT----ATKCMSLNPS----PPK--------LQNQTKSKPFISLPTPPKPNVSLA 60

Query: 112 LSSTAIAGAVFSAFSSSDPAFAAQQIAEIA---AEGDNRGLALLLPLIPAIAWVLFNILQ 171
           ++STA+AGAVFS+ S S+PA A QQIA++A   A  DNRGLALLLP++PAIAWVL+NILQ
Sbjct: 61  VTSTALAGAVFSSLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQ 120

Query: 172 PALNQINRMRSDKGVIIGLGLGGLAASEFMYAPDASATEIAMIADASSSDARGQLLLFVI 231
           PA+NQ+N+MR  KG+++GLG+GG  A+  +  P   A   A  A A+SSD+RGQLLL V+
Sbjct: 121 PAINQVNKMRESKGIVVGLGIGGGLAASGLLTPPPEAYAAAEAA-AASSDSRGQLLLIVV 180

Query: 232 SPAILWVLYNILQPALNQLNRMRS 253
           +PA+LWVLYNILQPALNQ+N+MRS
Sbjct: 181 TPALLWVLYNILQPALNQINKMRS 187

The following BLAST results are available for this feature:

BLAST of MS000939 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886078.1	7.5e-103	84.38	LOW QUALITY PROTEIN: photosystem II core complex proteins psbY, chloroplastic-li...	[more]
XP_022131700.1	2.5e-98	99.50	photosystem II core complex proteins psbY, chloroplastic [Momordica charantia]	[more]
XP_004142959.3	2.8e-97	81.96	photosystem II core complex proteins psbY, chloroplastic [Cucumis sativus]	[more]
XP_008444395.1	5.2e-96	81.18	PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Cucumis mel...	[more]
KAG7029231.1	7.5e-87	88.61	Photosystem II core complex proteins psbY, chloroplastic, partial [Cucurbita arg...	[more]

BLAST of MS000939 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P80470	1.0e-46	58.37	Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea OX...	[more]
O49347	8.7e-46	54.90	Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana...	[more]

BLAST of MS000939 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BQF3	1.2e-98	99.50	photosystem II core complex proteins psbY, chloroplastic OS=Momordica charantia ...	[more]
A0A0A0LKA1	1.3e-97	81.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G350230 PE=3 SV=1	[more]
A0A5A7UYJ2	2.5e-96	81.18	Photosystem II core complex proteins psbY OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3B9R1	2.5e-96	81.18	photosystem II core complex proteins psbY, chloroplastic OS=Cucumis melo OX=3656...	[more]
F6GVJ9	8.7e-73	77.23	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0137g00210 PE=3 SV=...	[more]

BLAST of MS000939 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67740.1	6.2e-47	54.90	photosystem II BY	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009388	Photosystem II PsbY	PFAM	PF06298	PsbY	coord: 145..177 e-value: 3.7E-14 score: 52.3 coord: 218..250 e-value: 7.9E-10 score: 38.4
IPR009388	Photosystem II PsbY	HAMAP	MF_00717	PSII_PsbY	coord: 145..179 score: 10.933356
None	No IPR available	PANTHER	PTHR34790:SF2	SUBFAMILY NOT NAMED	coord: 52..253
IPR038760	Photosystem II PsbY, plant	PANTHER	PTHR34790	PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC	coord: 52..253

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000939.1	MS000939.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0030145	manganese ion binding