MS000935 (gene) Bitter gourd (TR) v1

Overview


Name	MS000935
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	anther-specific protein BCP1
Location	scaffold36: 353191 .. 353523 (-)
RNA-Seq Expression	MS000935
Synteny	MS000935

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCGCCAATTCGTTGTCTTCGCTCTCGTCCTCTTCGCCGTCGTCGGCTTCGCCTGCGCAGCGACCCCTGCCGAAACCCCGAAGAGCGCCGCGAACAGCACCGACGCTGGAGCAGCAGCTGCCGCGGCACCCGGCGCCGATAACGAGATCGGAAACACTGACGGAGCCGCTGCCCCCGGAGCAGGCGAGGACATCGTTGCAGGCCCAGTTGGTGGACCCGGCGCCGCCGCTGGAGGTGACTTAGTGCCGGCCGAATCGCCCAAGAGCGCTGCCTCGGCTGTGAAGATGTCCGCCGTCGCTGGCGTGGCTGCAATCGCCGGCTTTTTCTTC

mRNA sequence

ATGGCCCGCCAATTCGTTGTCTTCGCTCTCGTCCTCTTCGCCGTCGTCGGCTTCGCCTGCGCAGCGACCCCTGCCGAAACCCCGAAGAGCGCCGCGAACAGCACCGACGCTGGAGCAGCAGCTGCCGCGGCACCCGGCGCCGATAACGAGATCGGAAACACTGACGGAGCCGCTGCCCCCGGAGCAGGCGAGGACATCGTTGCAGGCCCAGTTGGTGGACCCGGCGCCGCCGCTGGAGGTGACTTAGTGCCGGCCGAATCGCCCAAGAGCGCTGCCTCGGCTGTGAAGATGTCCGCCGTCGCTGGCGTGGCTGCAATCGCCGGCTTTTTCTTC

Coding sequence (CDS)

ATGGCCCGCCAATTCGTTGTCTTCGCTCTCGTCCTCTTCGCCGTCGTCGGCTTCGCCTGCGCAGCGACCCCTGCCGAAACCCCGAAGAGCGCCGCGAACAGCACCGACGCTGGAGCAGCAGCTGCCGCGGCACCCGGCGCCGATAACGAGATCGGAAACACTGACGGAGCCGCTGCCCCCGGAGCAGGCGAGGACATCGTTGCAGGCCCAGTTGGTGGACCCGGCGCCGCCGCTGGAGGTGACTTAGTGCCGGCCGAATCGCCCAAGAGCGCTGCCTCGGCTGTGAAGATGTCCGCCGTCGCTGGCGTGGCTGCAATCGCCGGCTTTTTCTTC

Protein sequence

MARQFVVFALVLFAVVGFACAATPAETPKSAANSTDAGAAAAAAPGADNEIGNTDGAAAPGAGEDIVAGPVGGPGAAAGGDLVPAESPKSAASAVKMSAVAGVAAIAGFFF

Homology

[Close]

BLAST of MS000935 vs. NCBI nr
Match: XP_022152212.1 (anther-specific protein BCP1 [Momordica charantia])

HSP 1 Score: 160.2 bits (404), Expect = 1.0e-35
Identity = 99/111 (89.19%), Postives = 102/111 (91.89%), Query Frame = 0


Query: 1   MARQFVVFALVLFAVVGFACAATPAETPKSAANSTDAGAAAAAAPGADNEIGNTDG-AAA 60
           MARQFV FALVLFAVVGFACAA+PAE PK+AANST A A AAAAPGADNEIGNTDG AAA
Sbjct: 1   MARQFVAFALVLFAVVGFACAASPAEPPKAAANSTAADAGAAAAPGADNEIGNTDGAAAA 60

Query: 61  PGAGEDIVAGPVGGPGAAAGGDLVPAESPKSAASAVKMSAVAGVAAIAGFF 111
           PGAGEDIV GPVGGPGAAAGGDLVPAESPKS A AVK+SAVAGVAAIAGFF
Sbjct: 61  PGAGEDIVEGPVGGPGAAAGGDLVPAESPKSGAEAVKISAVAGVAAIAGFF 111

[Close]

BLAST of MS000935 vs. NCBI nr
Match: XP_038885796.1 (outer membrane protein H.8-like [Benincasa hispida])

HSP 1 Score: 124.0 bits (310), Expect = 8.0e-25
Identity = 78/111 (70.27%), Postives = 89/111 (80.18%), Query Frame = 0


Query: 1   MARQFVVFALVLFAVVGFACAATPAETPKSAANSTDAGAAAAAAPGADNEIGNTDGAAAP 60
           MARQFVVFALVLFAV+GFACAATPAE+PK++A++ D G  A  APGA+NEIGNT+GA AP
Sbjct: 1   MARQFVVFALVLFAVIGFACAATPAESPKASADNADVG--AQLAPGAENEIGNTEGADAP 60

Query: 61  GAGEDIVAGPVGGPGAAAGGDLVPAESPKSAASAVKMSAVAGVAAIAGFFF 112
              ED+V  P+GGP AAA G  VPAESPKS ASAVK SA    AA+AGFFF
Sbjct: 61  AGSEDVVEAPIGGPDAAAAG-FVPAESPKSGASAVKFSATVAGAAVAGFFF 108

[Close]

BLAST of MS000935 vs. NCBI nr
Match: XP_022997549.1 (anther-specific protein BCP1-like [Cucurbita maxima])

HSP 1 Score: 116.7 bits (291), Expect = 1.3e-22
Identity = 72/111 (64.86%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 1   MARQFVVFALVLFAVVGFACAATPAETPKSAANSTDAGAAAAAAPGADNEIGNTDGAAAP 60
           MARQFVV AL+LFA+VGFACAA+PAE+PK +AN+TD G     APGAD EIGNTDG  A 
Sbjct: 1   MARQFVVLALLLFALVGFACAASPAESPKGSANNTDVG--DLLAPGADKEIGNTDGGDAT 60

Query: 61  GAGEDIVAGPVGGPGAAAGGDLVPAESPKSAASAVKMSAVAGVAAIAGFFF 112
              +D+V GP+GGPG   GG+ VPAE+PKS ASAV++SAVA + A+AG+FF
Sbjct: 61  DGSDDVVEGPIGGPG-VPGGESVPAEAPKSGASAVELSAVAALVAVAGYFF 108

[Close]

BLAST of MS000935 vs. NCBI nr
Match: XP_016899951.1 (PREDICTED: classical arabinogalactan protein 11-like [Cucumis melo])

HSP 1 Score: 113.2 bits (282), Expect = 1.4e-21
Identity = 76/111 (68.47%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 1   MARQFVVFALVLFAVVGFACAATPAETPKSAANSTDAGAAAAAAPGADNEIGNTDGAAAP 60
           MARQFVVFALVLFAV+GFACAA+PAE PK +A+S  AGA A  AP ADN IGNT+GA AP
Sbjct: 1   MARQFVVFALVLFAVIGFACAASPAEAPKGSADS--AGAGATLAPAADNAIGNTEGADAP 60

Query: 61  GAGEDIVAGPVGGPGAAAGGDLVPAESPKSAASAVKMSAVAGVAAIAGFFF 112
               ++V  PVGGPG+AA G +VPA +P S ASA+K SAVA VAA+AGFFF
Sbjct: 61  AGSNEVVEAPVGGPGSAAAG-VVPAPAP-SGASALKFSAVAAVAAVAGFFF 107

[Close]

BLAST of MS000935 vs. NCBI nr
Match: XP_022951863.1 (anther-specific protein BCP1-like [Cucurbita moschata])

HSP 1 Score: 107.8 bits (268), Expect = 5.9e-20
Identity = 78/113 (69.03%), Postives = 82/113 (72.57%), Query Frame = 0


Query: 1   MARQFVVFALVLFAVVGFACAATPAETPKSAANSTDAGAAAAAAPGADNEIGN-TDGAAA 60
           MARQFVV ALVLFAVVGFA AA PAETPK+ AN T+       APGAD +IGN TDGAAA
Sbjct: 1   MARQFVVVALVLFAVVGFASAAVPAETPKAGANKTE-------APGADGKIGNTTDGAAA 60

Query: 61  PGAGEDIVAGPVGGPGAAAGGDLVPAESPKSAASAVK--MSAVAGVAAIAGFF 111
           PG   D V GPVGGPG AAG    PAESPKS AS VK   SAV GVAA+AG F
Sbjct: 61  PGGSNDTVEGPVGGPG-AAGASSGPAESPKSDASTVKFSFSAVGGVAAVAGVF 105

[Close]

BLAST of MS000935 vs. ExPASy TrEMBL
Match: A0A6J1DFK4 (anther-specific protein BCP1 OS=Momordica charantia OX=3673 GN=LOC111019987 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 4.9e-36
Identity = 99/111 (89.19%), Postives = 102/111 (91.89%), Query Frame = 0


Query: 1   MARQFVVFALVLFAVVGFACAATPAETPKSAANSTDAGAAAAAAPGADNEIGNTDG-AAA 60
           MARQFV FALVLFAVVGFACAA+PAE PK+AANST A A AAAAPGADNEIGNTDG AAA
Sbjct: 1   MARQFVAFALVLFAVVGFACAASPAEPPKAAANSTAADAGAAAAPGADNEIGNTDGAAAA 60

Query: 61  PGAGEDIVAGPVGGPGAAAGGDLVPAESPKSAASAVKMSAVAGVAAIAGFF 111
           PGAGEDIV GPVGGPGAAAGGDLVPAESPKS A AVK+SAVAGVAAIAGFF
Sbjct: 61  PGAGEDIVEGPVGGPGAAAGGDLVPAESPKSGAEAVKISAVAGVAAIAGFF 111

[Close]

BLAST of MS000935 vs. ExPASy TrEMBL
Match: A0A6J1KBR3 (anther-specific protein BCP1-like OS=Cucurbita maxima OX=3661 GN=LOC111492442 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 6.2e-23
Identity = 72/111 (64.86%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 1   MARQFVVFALVLFAVVGFACAATPAETPKSAANSTDAGAAAAAAPGADNEIGNTDGAAAP 60
           MARQFVV AL+LFA+VGFACAA+PAE+PK +AN+TD G     APGAD EIGNTDG  A 
Sbjct: 1   MARQFVVLALLLFALVGFACAASPAESPKGSANNTDVG--DLLAPGADKEIGNTDGGDAT 60

Query: 61  GAGEDIVAGPVGGPGAAAGGDLVPAESPKSAASAVKMSAVAGVAAIAGFFF 112
              +D+V GP+GGPG   GG+ VPAE+PKS ASAV++SAVA + A+AG+FF
Sbjct: 61  DGSDDVVEGPIGGPG-VPGGESVPAEAPKSGASAVELSAVAALVAVAGYFF 108

[Close]

BLAST of MS000935 vs. ExPASy TrEMBL
Match: A0A0A0LQR1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G349700 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.8e-22
Identity = 76/111 (68.47%), Postives = 87/111 (78.38%), Query Frame = 0


Query: 1   MARQFVVFALVLFAVVGFACAATPAETPKSAANSTDAGAAAAAAPGADNEIGNTDGAAAP 60
           MARQFVVFALVLFAV+GF CAATPAE PK +A++  AG  A  APGA+NEIGNT+GA AP
Sbjct: 1   MARQFVVFALVLFAVIGFTCAATPAEAPKGSADT--AGVGAQLAPGAENEIGNTEGADAP 60

Query: 61  GAGEDIVAGPVGGPGAAAGGDLVPAESPKSAASAVKMSAVAGVAAIAGFFF 112
              ED+V  PVGGPGA AGG  VPA +P SAASA++ SA A V A+AGFFF
Sbjct: 61  AGSEDVVEAPVGGPGATAGG-FVPAPAP-SAASALEFSAAAAVTAVAGFFF 107

[Close]

BLAST of MS000935 vs. ExPASy TrEMBL
Match: A0A1S4DVD7 (classical arabinogalactan protein 11-like OS=Cucumis melo OX=3656 GN=LOC107990709 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.8e-22
Identity = 76/111 (68.47%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 1   MARQFVVFALVLFAVVGFACAATPAETPKSAANSTDAGAAAAAAPGADNEIGNTDGAAAP 60
           MARQFVVFALVLFAV+GFACAA+PAE PK +A+S  AGA A  AP ADN IGNT+GA AP
Sbjct: 1   MARQFVVFALVLFAVIGFACAASPAEAPKGSADS--AGAGATLAPAADNAIGNTEGADAP 60

Query: 61  GAGEDIVAGPVGGPGAAAGGDLVPAESPKSAASAVKMSAVAGVAAIAGFFF 112
               ++V  PVGGPG+AA G +VPA +P S ASA+K SAVA VAA+AGFFF
Sbjct: 61  AGSNEVVEAPVGGPGSAAAG-VVPAPAP-SGASALKFSAVAAVAAVAGFFF 107

[Close]

BLAST of MS000935 vs. ExPASy TrEMBL
Match: A0A6J1GIW9 (anther-specific protein BCP1-like OS=Cucurbita moschata OX=3662 GN=LOC111454594 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.9e-20
Identity = 78/113 (69.03%), Postives = 82/113 (72.57%), Query Frame = 0


Query: 1   MARQFVVFALVLFAVVGFACAATPAETPKSAANSTDAGAAAAAAPGADNEIGN-TDGAAA 60
           MARQFVV ALVLFAVVGFA AA PAETPK+ AN T+       APGAD +IGN TDGAAA
Sbjct: 1   MARQFVVVALVLFAVVGFASAAVPAETPKAGANKTE-------APGADGKIGNTTDGAAA 60

Query: 61  PGAGEDIVAGPVGGPGAAAGGDLVPAESPKSAASAVK--MSAVAGVAAIAGFF 111
           PG   D V GPVGGPG AAG    PAESPKS AS VK   SAV GVAA+AG F
Sbjct: 61  PGGSNDTVEGPVGGPG-AAGASSGPAESPKSDASTVKFSFSAVGGVAAVAGVF 105

The following BLAST results are available for this feature:

BLAST of MS000935 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152212.1	1.0e-35	89.19	anther-specific protein BCP1 [Momordica charantia]	[more]
XP_038885796.1	8.0e-25	70.27	outer membrane protein H.8-like [Benincasa hispida]	[more]
XP_022997549.1	1.3e-22	64.86	anther-specific protein BCP1-like [Cucurbita maxima]	[more]
XP_016899951.1	1.4e-21	68.47	PREDICTED: classical arabinogalactan protein 11-like [Cucumis melo]	[more]
XP_022951863.1	5.9e-20	69.03	anther-specific protein BCP1-like [Cucurbita moschata]	[more]

BLAST of MS000935 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS000935 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DFK4	4.9e-36	89.19	anther-specific protein BCP1 OS=Momordica charantia OX=3673 GN=LOC111019987 PE=4...	[more]
A0A6J1KBR3	6.2e-23	64.86	anther-specific protein BCP1-like OS=Cucurbita maxima OX=3661 GN=LOC111492442 PE...	[more]
A0A0A0LQR1	1.8e-22	68.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G349700 PE=4 SV=1	[more]
A0A1S4DVD7	6.8e-22	68.47	classical arabinogalactan protein 11-like OS=Cucumis melo OX=3656 GN=LOC10799070...	[more]
A0A6J1GIW9	2.9e-20	69.03	anther-specific protein BCP1-like OS=Cucurbita moschata OX=3662 GN=LOC111454594 ...	[more]

BLAST of MS000935 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..73
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..20 score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000935.1	MS000935.1	mRNA