MS000932 (gene) Bitter gourd (TR) v1

Overview


Name	MS000932
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold36: 338258 .. 338784 (+)
RNA-Seq Expression	MS000932
Synteny	MS000932

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAAGTAGCGACGTTCTTCGCAATGTCGTTGGGGGCCTTCGTATTCTGGCAGTCCATGGATAAACTTCATGTTTGGATCGCTCTCCGTCAAGACGAGAAGGTTCTCTTTCAAATTTGCTCTTTAGATTTCTCTAATTTTGTGGTAGTATAAACCCCGCAGTCCTTATAGTTCATTCTTGTGCCGATACCCGGTTCTCCATAGAAGACCCAGGAAAAAAAAAAACCCTAGGTTGCAAATATTGGGCAGATTATTTTGTTTTACCTTCTAGCTCTGAATGCGATATTTTTATAGAAATTTTCCATTACAAATTCGTGATCTATGTATAGGCAGCTCGGCAGAAACGTTGGAATAAGCTCTATTGAATCTAAATACAAAATTTTCGGGATATAAATTGGATTTAATTAAAGGTGTATCCGTGTTCCTCTTTGCTGTTTCAGAAAGAGAGGTTGGAAAAGGAAGCGGAGATCAGAAGAGTTAGGGAAGAGCTACTGCAACAAGCGAAACAAAACGACTCTCTTGCT

mRNA sequence

ATGGTGAAAGTAGCGACGTTCTTCGCAATGTCGTTGGGGGCCTTCGTATTCTGGCAGTCCATGGATAAACTTCATGTTTGGATCGCTCTCCGTCAAGACGAGAAGAAAGAGAGGTTGGAAAAGGAAGCGGAGATCAGAAGAGTTAGGGAAGAGCTACTGCAACAAGCGAAACAAAACGACTCTCTTGCT

Coding sequence (CDS)

ATGGTGAAAGTAGCGACGTTCTTCGCAATGTCGTTGGGGGCCTTCGTATTCTGGCAGTCCATGGATAAACTTCATGTTTGGATCGCTCTCCGTCAAGACGAGAAGAAAGAGAGGTTGGAAAAGGAAGCGGAGATCAGAAGAGTTAGGGAAGAGCTACTGCAACAAGCGAAACAAAACGACTCTCTTGCT

Protein sequence

MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKERLEKEAEIRRVREELLQQAKQNDSLA

Homology

[Close]

BLAST of MS000932 vs. NCBI nr
Match: KGN62333.1 (hypothetical protein Csa_018655 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 2.5e-23
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKERLEKEAEIRRVREELLQQAKQND 60
          MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKERLEKEAEIRRVREELLQQAKQND
Sbjct: 1  MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKERLEKEAEIRRVREELLQQAKQND 60

Query: 61 SLA 64
          SLA
Sbjct: 61 SLA 63

[Close]

BLAST of MS000932 vs. NCBI nr
Match: XP_016899934.1 (PREDICTED: uncharacterized protein LOC103487730 [Cucumis melo] >KAA0061049.1 uncharacterized protein E6C27_scaffold501G001870 [Cucumis melo var. makuwa])

HSP 1 Score: 117.5 bits (293), Expect = 4.3e-23
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKERLEKEAEIRRVREELLQQAKQND 60
          MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKER+EKEAEIRRVREELLQQAKQND
Sbjct: 1  MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKERMEKEAEIRRVREELLQQAKQND 60

Query: 61 SLA 64
          SLA
Sbjct: 61 SLA 63

[Close]

BLAST of MS000932 vs. NCBI nr
Match: XP_022962438.1 (uncharacterized protein LOC111462876 [Cucurbita moschata] >XP_022996773.1 uncharacterized protein LOC111491907 [Cucurbita maxima] >XP_023002123.1 uncharacterized protein LOC111496080 [Cucurbita maxima] >XP_023545500.1 uncharacterized protein LOC111804906 [Cucurbita pepo subsp. pepo] >KAG7029223.1 hypothetical protein SDJN02_07561 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117.1 bits (292), Expect = 5.6e-23
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKERLEKEAEIRRVREELLQQAKQND 60
          MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKERLE+EAEIRRVREELLQQAKQND
Sbjct: 1  MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKERLEREAEIRRVREELLQQAKQND 60

Query: 61 SLA 64
          SLA
Sbjct: 61 SLA 63

[Close]

BLAST of MS000932 vs. NCBI nr
Match: XP_022131358.1 (uncharacterized protein LOC111004603 [Momordica charantia])

HSP 1 Score: 116.3 bits (290), Expect = 9.5e-23
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 1  MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKERLEKEAEIRRVREELLQQAKQND 60
          MVKVATFFAMSLGAFVFWQSMDKLHVWIAL QDEKKERLEKEAEIRRVREELLQQAKQND
Sbjct: 1  MVKVATFFAMSLGAFVFWQSMDKLHVWIALHQDEKKERLEKEAEIRRVREELLQQAKQND 60

Query: 61 SLA 64
          SLA
Sbjct: 61 SLA 63

[Close]

BLAST of MS000932 vs. NCBI nr
Match: XP_038885062.1 (uncharacterized protein LOC120075596 [Benincasa hispida])

HSP 1 Score: 115.9 bits (289), Expect = 1.2e-22
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKERLEKEAEIRRVREELLQQAKQND 60
          MVKVATFFAM+LGAFVFWQSMDKLHVWIALRQDEKKERLE+EAEIRRVREELLQQAKQND
Sbjct: 1  MVKVATFFAMTLGAFVFWQSMDKLHVWIALRQDEKKERLEREAEIRRVREELLQQAKQND 60

Query: 61 SLA 64
          SLA
Sbjct: 61 SLA 63

[Close]

BLAST of MS000932 vs. ExPASy TrEMBL
Match: A0A0A0LKK4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G349670 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.2e-23
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKERLEKEAEIRRVREELLQQAKQND 60
          MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKERLEKEAEIRRVREELLQQAKQND
Sbjct: 1  MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKERLEKEAEIRRVREELLQQAKQND 60

Query: 61 SLA 64
          SLA
Sbjct: 61 SLA 63

[Close]

BLAST of MS000932 vs. ExPASy TrEMBL
Match: A0A5A7V5Q7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001870 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.1e-23
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKERLEKEAEIRRVREELLQQAKQND 60
          MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKER+EKEAEIRRVREELLQQAKQND
Sbjct: 1  MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKERMEKEAEIRRVREELLQQAKQND 60

Query: 61 SLA 64
          SLA
Sbjct: 61 SLA 63

[Close]

BLAST of MS000932 vs. ExPASy TrEMBL
Match: A0A1S4DVC2 (uncharacterized protein LOC103487730 OS=Cucumis melo OX=3656 GN=LOC103487730 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.1e-23
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKERLEKEAEIRRVREELLQQAKQND 60
          MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKER+EKEAEIRRVREELLQQAKQND
Sbjct: 1  MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKERMEKEAEIRRVREELLQQAKQND 60

Query: 61 SLA 64
          SLA
Sbjct: 61 SLA 63

[Close]

BLAST of MS000932 vs. ExPASy TrEMBL
Match: A0A6J1KBZ1 (uncharacterized protein LOC111491907 OS=Cucurbita maxima OX=3661 GN=LOC111491907 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.7e-23
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKERLEKEAEIRRVREELLQQAKQND 60
          MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKERLE+EAEIRRVREELLQQAKQND
Sbjct: 1  MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKERLEREAEIRRVREELLQQAKQND 60

Query: 61 SLA 64
          SLA
Sbjct: 61 SLA 63

[Close]

BLAST of MS000932 vs. ExPASy TrEMBL
Match: A0A6J1HET5 (uncharacterized protein LOC111462876 OS=Cucurbita moschata OX=3662 GN=LOC111462876 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.7e-23
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKERLEKEAEIRRVREELLQQAKQND 60
          MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKERLE+EAEIRRVREELLQQAKQND
Sbjct: 1  MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKERLEREAEIRRVREELLQQAKQND 60

Query: 61 SLA 64
          SLA
Sbjct: 61 SLA 63

[Close]

BLAST of MS000932 vs. TAIR 10
Match: AT1G67785.1 (unknown protein; Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 90.9 bits (224), Expect = 4.0e-19
Identity = 45/63 (71.43%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 1  MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKERLEKEAEIRRVREELLQQAKQND 60
          MVKV T+F M+L AF FWQSMDK+HVWIAL QDEK+ER+EKEAE+RRVR ELL++A++ D
Sbjct: 1  MVKVLTYFGMTLAAFAFWQSMDKVHVWIALHQDEKQERMEKEAEVRRVRAELLRKAREED 60

Query: 61 SLA 64
           LA
Sbjct: 61 PLA 63

The following BLAST results are available for this feature:

BLAST of MS000932 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62333.1	2.5e-23	100.00	hypothetical protein Csa_018655 [Cucumis sativus]	[more]
XP_016899934.1	4.3e-23	98.41	PREDICTED: uncharacterized protein LOC103487730 [Cucumis melo] >KAA0061049.1 unc...	[more]
XP_022962438.1	5.6e-23	98.41	uncharacterized protein LOC111462876 [Cucurbita moschata] >XP_022996773.1 unchar...	[more]
XP_022131358.1	9.5e-23	98.41	uncharacterized protein LOC111004603 [Momordica charantia]	[more]
XP_038885062.1	1.2e-22	96.83	uncharacterized protein LOC120075596 [Benincasa hispida]	[more]

BLAST of MS000932 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS000932 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKK4	1.2e-23	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G349670 PE=4 SV=1	[more]
A0A5A7V5Q7	2.1e-23	98.41	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S4DVC2	2.1e-23	98.41	uncharacterized protein LOC103487730 OS=Cucumis melo OX=3656 GN=LOC103487730 PE=...	[more]
A0A6J1KBZ1	2.7e-23	98.41	uncharacterized protein LOC111491907 OS=Cucurbita maxima OX=3661 GN=LOC111491907...	[more]
A0A6J1HET5	2.7e-23	98.41	uncharacterized protein LOC111462876 OS=Cucurbita moschata OX=3662 GN=LOC1114628...	[more]

BLAST of MS000932 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67785.1	4.0e-19	71.43	unknown protein; Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 31..63
None	No IPR available	PANTHER	PTHR37711:SF2	BNAA02G13350D PROTEIN	coord: 1..63
None	No IPR available	PANTHER	PTHR37711	OS01G0908400 PROTEIN	coord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000932.1	MS000932.1	mRNA