MS000918 (gene) Bitter gourd (TR) v1

Overview


Name	MS000918
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ribosomal protein L18e/L15 superfamily protein
Location	scaffold36: 268704 .. 268862 (-)
RNA-Seq Expression	MS000918
Synteny	MS000918

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCTCAATGTCCACAAGCTCTGGTCCCCTTGCTCCATGTCACGCAATTGGGCGCCGGAGAAACAGCCTATTGTCGTGAAGGCTAAGCTTGTTTCCAACATCGCTGAGAAGAAGATTAAGGATGCTACTCACTGCTTCGATTCGGTATTTTTCGCTCTT

mRNA sequence

ATTCTCAATGTCCACAAGCTCTGGTCCCCTTGCTCCATGTCACGCAATTGGGCGCCGGAGAAACAGCCTATTGTCGTGAAGGCTAAGCTTGTTTCCAACATCGCTGAGAAGAAGATTAAGGATGCTACTCACTGCTTCGATTCGGTATTTTTCGCTCTT

Coding sequence (CDS)

ATTCTCAATGTCCACAAGCTCTGGTCCCCTTGCTCCATGTCACGCAATTGGGCGCCGGAGAAACAGCCTATTGTCGTGAAGGCTAAGCTTGTTTCCAACATCGCTGAGAAGAAGATTAAGGATGCTACTCACTGCTTCGATTCGGTATTTTTCGCTCTT

Protein sequence

ILNVHKLWSPCSMSRNWAPEKQPIVVKAKLVSNIAEKKIKDATHCFDSVFFAL

Homology

[Close]

BLAST of MS000918 vs. ExPASy Swiss-Prot
Match: Q9LPV3 (Putative 60S ribosomal protein L27a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL27AA PE=5 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.2e-05
Identity = 24/42 (57.14%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 1  ILNVHKLWSPCSMSRNWAPEKQPIVVKAKLVSNIAEKKIKDA 43
          I+N+ KLWS   + + + PE +P+VVKAKLVSN  EKKIK+A
Sbjct: 53 IVNLDKLWS-MVLGKGFLPENKPVVVKAKLVSNTDEKKIKEA 93

[Close]

BLAST of MS000918 vs. TAIR 10
Match: AT1G12960.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 49.7 bits (117), Expect = 8.5e-07
Identity = 24/42 (57.14%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 1  ILNVHKLWSPCSMSRNWAPEKQPIVVKAKLVSNIAEKKIKDA 43
          I+N+ KLWS   + + + PE +P+VVKAKLVSN  EKKIK+A
Sbjct: 53 IVNLDKLWS-MVLGKGFLPENKPVVVKAKLVSNTDEKKIKEA 93

The following BLAST results are available for this feature:

BLAST of MS000918 vs.


Match Name	E-value	Identity	Description

BLAST of MS000918 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LPV3	1.2e-05	57.14	Putative 60S ribosomal protein L27a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL27AA...	[more]

BLAST of MS000918 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MS000918 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G12960.1	8.5e-07	57.14	Ribosomal protein L18e/L15 superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.100.10.10		coord: 13..46 e-value: 1.8E-5 score: 26.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000918.1	MS000918.1	mRNA