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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATTCTCAATGTCCACAAGCTCTGGTCCCCTTGCTCCATGTCACGCAATTGGGCGCCGGAGAAACAGCCTATTGTCGTGAAGGCTAAGCTTGTTTCCAACATCGCTGAGAAGAAGATTAAGGATGCTACTCACTGCTTCGATTCGGTATTTTTCGCTCTT mRNA sequence ATTCTCAATGTCCACAAGCTCTGGTCCCCTTGCTCCATGTCACGCAATTGGGCGCCGGAGAAACAGCCTATTGTCGTGAAGGCTAAGCTTGTTTCCAACATCGCTGAGAAGAAGATTAAGGATGCTACTCACTGCTTCGATTCGGTATTTTTCGCTCTT Coding sequence (CDS) ATTCTCAATGTCCACAAGCTCTGGTCCCCTTGCTCCATGTCACGCAATTGGGCGCCGGAGAAACAGCCTATTGTCGTGAAGGCTAAGCTTGTTTCCAACATCGCTGAGAAGAAGATTAAGGATGCTACTCACTGCTTCGATTCGGTATTTTTCGCTCTT Protein sequence ILNVHKLWSPCSMSRNWAPEKQPIVVKAKLVSNIAEKKIKDATHCFDSVFFAL
Homology
BLAST of MS000918 vs. ExPASy Swiss-Prot
Match: Q9LPV3 (Putative 60S ribosomal protein L27a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL27AA PE=5 SV=1) HSP 1 Score: 49.7 bits (117), Expect = 1.2e-05 Identity = 24/42 (57.14%), Postives = 32/42 (76.19%), Query Frame = 0
Query: 1 ILNVHKLWSPCSMSRNWAPEKQPIVVKAKLVSNIAEKKIKDA 43
I+N+ KLWS + + + PE +P+VVKAKLVSN EKKIK+A
Sbjct: 53 IVNLDKLWS-MVLGKGFLPENKPVVVKAKLVSNTDEKKIKEA 93
BLAST of MS000918 vs. TAIR 10
Match: AT1G12960.1 (Ribosomal protein L18e/L15 superfamily protein ) HSP 1 Score: 49.7 bits (117), Expect = 8.5e-07 Identity = 24/42 (57.14%), Postives = 32/42 (76.19%), Query Frame = 0
Query: 1 ILNVHKLWSPCSMSRNWAPEKQPIVVKAKLVSNIAEKKIKDA 43
I+N+ KLWS + + + PE +P+VVKAKLVSN EKKIK+A
Sbjct: 53 IVNLDKLWS-MVLGKGFLPENKPVVVKAKLVSNTDEKKIKEA 93
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Q9LPV3 | 1.2e-05 | 57.14 | Putative 60S ribosomal protein L27a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL27AA... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| AT1G12960.1 | 8.5e-07 | 57.14 | Ribosomal protein L18e/L15 superfamily protein | [more] |
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | GENE3D | 3.100.10.10 | | coord: 13..46
e-value: 1.8E-5
score: 26.8 |
Relationships
The following mRNA feature(s) are a part of this gene:
| Feature Name | Unique Name | Type |
|---|
| MS000918.1 | MS000918.1 | mRNA |
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