MS000915 (gene) Bitter gourd (TR) v1

Overview


Name	MS000915
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	F-box protein
Location	scaffold36: 258020 .. 260049 (+)
RNA-Seq Expression	MS000915
Synteny	MS000915

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACCATGACGCAAAGAACTTGGCCGGATCGCTCCGATGCCTCTCCTTTCTCTTCCTTTTCTCTGTGCAGTATGGGTATCAGAGGCAAAGCCGCCGTCCAGGATCATGATTTCTCTCCTCCTATCCCTTCCCATTCCCATTCCAAGTCCAGTAAGCACGCCCACAGATTCCACGCCTCTCCATCCTCCCCCTCTTTCTCTGCCTTGCCTTACGATATTATCATCAAAATCGCTGCCTCTTTTAACCTCCCAAATCTCCGGGTTGCCTCCTTTGTCTGCAAGTCTTGGTTCGAGGCCCTCAGGCCTCTCAGGGAGGCTATGCTGTTTCTGCGGTGGGGAAAGCGCTTCAAGCATGGTCGTGCTGGGGTTCGCCCCAATTCTGACAAGGCTCTTAATTCCTTTCTCAAGGCTGCTGCTCGTGGCTCCACCCTTGCCATGGTTGATGCCGGCCTCCTCTACTGGGAGATGGGCAACAAGCACCAAGCTATTGCCTTGTACCAGAAGGCTGCTGACCTAGGCGATCCTGCTGCCAAGTGCAATTTAGGAATCTCCTATTTGCAAGGTTTTATCAAATCTTAATCCTCTTTTCATTCCCCATCTAATCTAATTTCTGCACAATTCACACTAACAATTGGTTAATTAGGGTTCGCCCCCAGTCCTGCTGGCATGTTTTCACGTATTTTAAGTGGACAGCAACAAATACAAATGTTCCCCTTTCCCAATATTTTTCATTAGGTTTTCCCTAGTCACCAGTTTCTAATTTTGGGTGCTGCAGGCCTCCGACTGCCTAATCTGTGGATTCTATAATACTTTTAAGTAGATCACTGATTGAAGGGTAATGGCTACTGTAGATGAAATTCTTTGCTTTCAATCATTCCATTGTTTTCTTCAATGAATTCTGCAGCGAAGCCTCCAAATCCGACCGAAGCTGTAAGATGGTTGCGGCAAGCGTCCATGGCCGGCAACATTCGTGCTCAATACCAACTTGCTCTGTGTCTACATCAAGGTCATGGGGTGGACCGCAATGTACAGGAAGCTGTATGTTATTTTCCCCTTCTTATCCATTTTGCTTATGAGGGAGATTTATGTTTAGGGTTAATGTTTCAATCAGCTGCCGTTATTATCCCCTTCTTATCCCTCTTTTGATGCTCAATTAAACCCGTAATGCTGTGTATTCTTCCGCTCTACCCCATTAGCCCACTTATATTACCTTTTCTTTACATTATTCTGCGTATTTAATAATGATAGAACGGTTTGCCCCTTTTTCCTGCCAATCAACTACTGAATGAGGATTAGTCACTCATCAGTGCAGATTGCGGTGAAAGTTGGATTTTTCAGTCCTTTTTCCTCTCTTTTTATTTCTTCCCCTTTGTGAAAAAGGCTAGGTGGTTTTTTAAAGCTGCCGAATGTGGATATGTGCGTGCTATGTACAACCTTTCTCTGTGCTACTCTTGCGGGGAAGGCATGGTACACAACCATCAGCAAGCTAAGAAGTGGATGAAGCGGGCAGCTGATCGCGGCCACAGTAAAGCTCAATTTGAGCATGGACTTCGCCTCTTTTCTGTATGTTTCAAATCAATATCATCTTTCTTTTCCCGGTGATGTTTATTGCTTTGGTATAGGTGTCTTGATAACTTCCACCATGTCATGGGTCATTGATCAAATTGTTTGAATTGAGACTTCTAGTAATATTTTGGGTGTTTTAGTGTGAACGGAGAAGTTGTATGTGAGAACAGGAGAAAGAAAACGATTTGAGACCATCTAGATTGTTTACATTGTTGACAAGCCCACCCTAATAACGTGAAAGAAGACTTGGAATGTAGAAACTGATGCAGGAACTGATTGAGTACTTGCTATTTGGGCAGGAAAGGGACATGATGAAAGCTGTAGTCTACTTGGAACTTGCAACTCGTTCTGGTGAAAGGGCAGCTGCTCATGTCAAGAACGCAATTCTCCAACAACTTTCGCAAACTTCGCGAGATCGTGCCATGTCTCTTGCTGATAATTGGCGTGCTTTGCCTTCATCTCAT

mRNA sequence

AAAACCATGACGCAAAGAACTTGGCCGGATCGCTCCGATGCCTCTCCTTTCTCTTCCTTTTCTCTGTGCAGTATGGGTATCAGAGGCAAAGCCGCCGTCCAGGATCATGATTTCTCTCCTCCTATCCCTTCCCATTCCCATTCCAAGTCCAGTAAGCACGCCCACAGATTCCACGCCTCTCCATCCTCCCCCTCTTTCTCTGCCTTGCCTTACGATATTATCATCAAAATCGCTGCCTCTTTTAACCTCCCAAATCTCCGGGTTGCCTCCTTTGTCTGCAAGTCTTGGTTCGAGGCCCTCAGGCCTCTCAGGGAGGCTATGCTGTTTCTGCGGTGGGGAAAGCGCTTCAAGCATGGTCGTGCTGGGGTTCGCCCCAATTCTGACAAGGCTCTTAATTCCTTTCTCAAGGCTGCTGCTCGTGGCTCCACCCTTGCCATGGTTGATGCCGGCCTCCTCTACTGGGAGATGGGCAACAAGCACCAAGCTATTGCCTTGTACCAGAAGGCTGCTGACCTAGGCGATCCTGCTGCCAAGTGCAATTTAGGAATCTCCTATTTGCAAGCGAAGCCTCCAAATCCGACCGAAGCTGTAAGATGGTTGCGGCAAGCGTCCATGGCCGGCAACATTCGTGCTCAATACCAACTTGCTCTGTGTCTACATCAAGGTCATGGGGTGGACCGCAATGTACAGGAAGCTGCTAGGTGGTTTTTTAAAGCTGCCGAATGTGGATATGTGCGTGCTATGTACAACCTTTCTCTGTGCTACTCTTGCGGGGAAGGCATGGTACACAACCATCAGCAAGCTAAGAAGTGGATGAAGCGGGCAGCTGATCGCGGCCACAGTAAAGCTCAATTTGAGCATGGACTTCGCCTCTTTTCTGAAAGGGACATGATGAAAGCTGTAGTCTACTTGGAACTTGCAACTCGTTCTGGTGAAAGGGCAGCTGCTCATGTCAAGAACGCAATTCTCCAACAACTTTCGCAAACTTCGCGAGATCGTGCCATGTCTCTTGCTGATAATTGGCGTGCTTTGCCTTCATCTCAT

Coding sequence (CDS)

AAAACCATGACGCAAAGAACTTGGCCGGATCGCTCCGATGCCTCTCCTTTCTCTTCCTTTTCTCTGTGCAGTATGGGTATCAGAGGCAAAGCCGCCGTCCAGGATCATGATTTCTCTCCTCCTATCCCTTCCCATTCCCATTCCAAGTCCAGTAAGCACGCCCACAGATTCCACGCCTCTCCATCCTCCCCCTCTTTCTCTGCCTTGCCTTACGATATTATCATCAAAATCGCTGCCTCTTTTAACCTCCCAAATCTCCGGGTTGCCTCCTTTGTCTGCAAGTCTTGGTTCGAGGCCCTCAGGCCTCTCAGGGAGGCTATGCTGTTTCTGCGGTGGGGAAAGCGCTTCAAGCATGGTCGTGCTGGGGTTCGCCCCAATTCTGACAAGGCTCTTAATTCCTTTCTCAAGGCTGCTGCTCGTGGCTCCACCCTTGCCATGGTTGATGCCGGCCTCCTCTACTGGGAGATGGGCAACAAGCACCAAGCTATTGCCTTGTACCAGAAGGCTGCTGACCTAGGCGATCCTGCTGCCAAGTGCAATTTAGGAATCTCCTATTTGCAAGCGAAGCCTCCAAATCCGACCGAAGCTGTAAGATGGTTGCGGCAAGCGTCCATGGCCGGCAACATTCGTGCTCAATACCAACTTGCTCTGTGTCTACATCAAGGTCATGGGGTGGACCGCAATGTACAGGAAGCTGCTAGGTGGTTTTTTAAAGCTGCCGAATGTGGATATGTGCGTGCTATGTACAACCTTTCTCTGTGCTACTCTTGCGGGGAAGGCATGGTACACAACCATCAGCAAGCTAAGAAGTGGATGAAGCGGGCAGCTGATCGCGGCCACAGTAAAGCTCAATTTGAGCATGGACTTCGCCTCTTTTCTGAAAGGGACATGATGAAAGCTGTAGTCTACTTGGAACTTGCAACTCGTTCTGGTGAAAGGGCAGCTGCTCATGTCAAGAACGCAATTCTCCAACAACTTTCGCAAACTTCGCGAGATCGTGCCATGTCTCTTGCTGATAATTGGCGTGCTTTGCCTTCATCTCAT

Protein sequence

KTMTQRTWPDRSDASPFSSFSLCSMGIRGKAAVQDHDFSPPIPSHSHSKSSKHAHRFHASPSSPSFSALPYDIIIKIAASFNLPNLRVASFVCKSWFEALRPLREAMLFLRWGKRFKHGRAGVRPNSDKALNSFLKAAARGSTLAMVDAGLLYWEMGNKHQAIALYQKAADLGDPAAKCNLGISYLQAKPPNPTEAVRWLRQASMAGNIRAQYQLALCLHQGHGVDRNVQEAARWFFKAAECGYVRAMYNLSLCYSCGEGMVHNHQQAKKWMKRAADRGHSKAQFEHGLRLFSERDMMKAVVYLELATRSGERAAAHVKNAILQQLSQTSRDRAMSLADNWRALPSSH

Homology

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BLAST of MS000915 vs. NCBI nr
Match: XP_022131804.1 (F-box protein At1g70590 [Momordica charantia] >XP_022131805.1 F-box protein At1g70590 [Momordica charantia])

HSP 1 Score: 691.4 bits (1783), Expect = 3.9e-195
Identity = 343/346 (99.13%), Postives = 344/346 (99.42%), Query Frame = 0


Query: 3   MTQRTWPDRSDASPFSSFSLCSMGIRGKAAVQDHDFSPPIPSHSHSKSSKHAHRFHASPS 62
           MTQRTWPDRSDASPFSSFSLCSMGIRGKAAVQDHDFSPPIPSHSHSKSSKHAHRFHASPS
Sbjct: 1   MTQRTWPDRSDASPFSSFSLCSMGIRGKAAVQDHDFSPPIPSHSHSKSSKHAHRFHASPS 60

Query: 63  SPSFSALPYDIIIKIAASFNLPNLRVASFVCKSWFEALRPLREAMLFLRWGKRFKHGRAG 122
           SPSFSALPYDI+IKIAASFNLPNLRVASFVCKSWFEALRPLREAMLFLRWGKRFKHGRAG
Sbjct: 61  SPSFSALPYDILIKIAASFNLPNLRVASFVCKSWFEALRPLREAMLFLRWGKRFKHGRAG 120

Query: 123 VRPNSDKALNSFLKAAARGSTLAMVDAGLLYWEMGNKHQAIALYQKAADLGDPAAKCNLG 182
           VRPNSDKALNSFLKAAARGSTLAMVDAGLLYWEMGNKHQAIALYQKAADLGDPAAKCNLG
Sbjct: 121 VRPNSDKALNSFLKAAARGSTLAMVDAGLLYWEMGNKHQAIALYQKAADLGDPAAKCNLG 180

Query: 183 ISYLQAKPPNPTEAVRWLRQASMAGNIRAQYQLALCLHQGHGVDRNVQEAARWFFKAAEC 242
           ISYLQAKPPNPTEAVRWLRQAS AGNIRAQYQLALCLHQGHGVDRNVQEAARWFFKAAE 
Sbjct: 181 ISYLQAKPPNPTEAVRWLRQASKAGNIRAQYQLALCLHQGHGVDRNVQEAARWFFKAAEG 240

Query: 243 GYVRAMYNLSLCYSCGEGMVHNHQQAKKWMKRAADRGHSKAQFEHGLRLFSERDMMKAVV 302
           GYVRAMYNLSLCYSCGEGMVHNHQQAKKWMKRAADRGHSKAQFEHGLRLFSERDMMKAVV
Sbjct: 241 GYVRAMYNLSLCYSCGEGMVHNHQQAKKWMKRAADRGHSKAQFEHGLRLFSERDMMKAVV 300

Query: 303 YLELATRSGERAAAHVKNAILQQLSQTSRDRAMSLADNWRALPSSH 349
           YLELATRSGERAAAHVKNAILQQLSQTSRDRAMSLADNWRALPSSH
Sbjct: 301 YLELATRSGERAAAHVKNAILQQLSQTSRDRAMSLADNWRALPSSH 346

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BLAST of MS000915 vs. NCBI nr
Match: XP_023545562.1 (F-box protein At1g70590 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 591.7 bits (1524), Expect = 4.2e-165
Identity = 307/369 (83.20%), Postives = 321/369 (86.99%), Query Frame = 0


Query: 1   KTMTQRTWPDRSDASPFSSFSLCSMGIRGKAAVQDHD----FSPPIPSHSHSKSSKHAHR 60
           KTM QRTWPDRSDASPFSSFSL +  ++GKAAV+  D    FSP   S S S SSK   R
Sbjct: 63  KTMKQRTWPDRSDASPFSSFSLSN--VKGKAAVEVEDDVDHFSPHANSISISISSKFPDR 122

Query: 61  FHASPSSPS-----------------FSALPYDIIIKIAASFNLPNLRVASFVCKSWFEA 120
            HASPS+ S                 FSALPYD++IKIAASFNLPNLR ASFVCK WFEA
Sbjct: 123 LHASPSTSSSSQTPFFLPPSSFGGQDFSALPYDVLIKIAASFNLPNLRAASFVCKPWFEA 182

Query: 121 LRPLREAMLFLRWGKRFKHGRAGVRPNSDKALNSFLKAAARGSTLAMVDAGLLYWEMGNK 180
           LRPLREAMLFLRWGKRFKHGRAGVRPNSDKALNSFLKAAARGSTLAMVDAGLLYWEMGNK
Sbjct: 183 LRPLREAMLFLRWGKRFKHGRAGVRPNSDKALNSFLKAAARGSTLAMVDAGLLYWEMGNK 242

Query: 181 HQAIALYQKAADLGDPAAKCNLGISYLQAKPPNPTEAVRWLRQASMAGNIRAQYQLALCL 240
            +AIALYQKAADLGDPA KCNLGIS+L AKPPNPTEAVRWLRQ++MAGNIRAQYQLALCL
Sbjct: 243 GEAIALYQKAADLGDPAGKCNLGISFLHAKPPNPTEAVRWLRQSAMAGNIRAQYQLALCL 302

Query: 241 HQGHGVDRNVQEAARWFFKAAECGYVRAMYNLSLCYSCGEGMVHNHQQAKKWMKRAADRG 300
           HQGHGVDRNVQEAARWF KAAE GYVRAMYNLSLCYSCGEG+VHNHQQAKKWMKRAADRG
Sbjct: 303 HQGHGVDRNVQEAARWFLKAAEGGYVRAMYNLSLCYSCGEGLVHNHQQAKKWMKRAADRG 362

Query: 301 HSKAQFEHGLRLFSERDMMKAVVYLELATRSGERAAAHVKNAILQQLSQTSRDRAMSLAD 349
           HSKAQFEHGL LFSERDMMKAVVYLELATRSGERAAAHVKN ILQQLSQ+SRDR MS+AD
Sbjct: 363 HSKAQFEHGLHLFSERDMMKAVVYLELATRSGERAAAHVKNVILQQLSQSSRDRVMSVAD 422

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BLAST of MS000915 vs. NCBI nr
Match: XP_022996767.1 (F-box protein At1g70590 [Cucurbita maxima] >XP_022996768.1 F-box protein At1g70590 [Cucurbita maxima])

HSP 1 Score: 585.9 bits (1509), Expect = 2.3e-163
Identity = 302/365 (82.74%), Postives = 318/365 (87.12%), Query Frame = 0


Query: 3   MTQRTWPDRSDASPFSSFSLCSMGIRGKAAVQDHDFSPPIPSHSH--SKSSKHAHRFHAS 62
           M QRTWPDRSDASPFSSFSL +  ++GKAAV+  D       H++  S SSK   R HAS
Sbjct: 1   MPQRTWPDRSDASPFSSFSLSN--VKGKAAVEVEDDVDHFSRHANSISISSKFPDRLHAS 60

Query: 63  PSSPS-----------------FSALPYDIIIKIAASFNLPNLRVASFVCKSWFEALRPL 122
           PS+ S                 FSALPYD++IKIAASFNLPNLR ASFVCK WFEALRPL
Sbjct: 61  PSTSSSSQTPFFLPTSSFGGQDFSALPYDVLIKIAASFNLPNLRAASFVCKPWFEALRPL 120

Query: 123 REAMLFLRWGKRFKHGRAGVRPNSDKALNSFLKAAARGSTLAMVDAGLLYWEMGNKHQAI 182
           REAMLFLRWGKRFKHGRAGVRPNSDKALNSFLKAAARGSTLAMVDAGLLYWEMGNK +AI
Sbjct: 121 REAMLFLRWGKRFKHGRAGVRPNSDKALNSFLKAAARGSTLAMVDAGLLYWEMGNKGEAI 180

Query: 183 ALYQKAADLGDPAAKCNLGISYLQAKPPNPTEAVRWLRQASMAGNIRAQYQLALCLHQGH 242
           ALYQKAADLGDPA KCNLGIS+L AKPPNPTEAVRWLRQ++MAGNIRAQYQLALCLHQGH
Sbjct: 181 ALYQKAADLGDPAGKCNLGISFLHAKPPNPTEAVRWLRQSAMAGNIRAQYQLALCLHQGH 240

Query: 243 GVDRNVQEAARWFFKAAECGYVRAMYNLSLCYSCGEGMVHNHQQAKKWMKRAADRGHSKA 302
           GVDRNVQEAARWFFKAAE GYVRAMYNLSLCYSCGEG+VHNHQQAKKWMKRAADRGHSKA
Sbjct: 241 GVDRNVQEAARWFFKAAEGGYVRAMYNLSLCYSCGEGLVHNHQQAKKWMKRAADRGHSKA 300

Query: 303 QFEHGLRLFSERDMMKAVVYLELATRSGERAAAHVKNAILQQLSQTSRDRAMSLADNWRA 349
           QFEHGL LFSERDMMKAVVYLELATRSGERAAAHVKN ILQQLSQ+SRDR MS+ADNWRA
Sbjct: 301 QFEHGLHLFSERDMMKAVVYLELATRSGERAAAHVKNVILQQLSQSSRDRVMSVADNWRA 360

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BLAST of MS000915 vs. NCBI nr
Match: KAG7029215.1 (F-box protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 585.5 bits (1508), Expect = 3.0e-163
Identity = 305/367 (83.11%), Postives = 318/367 (86.65%), Query Frame = 0


Query: 3   MTQRTWPDRSDASPFSSFSLCSMGIRGKAAVQDHD----FSPPIPSHSHSKSSKHAHRFH 62
           M QRTWPDRSDASPFSSFSL S  ++GKAAV+  D    FS    S S S SSK   R H
Sbjct: 1   MKQRTWPDRSDASPFSSFSLSS--VKGKAAVEVDDDVDHFSRHANSISISISSKFPDRLH 60

Query: 63  ASPSSPS-----------------FSALPYDIIIKIAASFNLPNLRVASFVCKSWFEALR 122
           ASPS+ S                 FSALPYD++IKIAASFNLPNLR ASFVCK WFEALR
Sbjct: 61  ASPSTSSSSQTPFFLPPSSFGGQDFSALPYDVLIKIAASFNLPNLRAASFVCKPWFEALR 120

Query: 123 PLREAMLFLRWGKRFKHGRAGVRPNSDKALNSFLKAAARGSTLAMVDAGLLYWEMGNKHQ 182
           PLREAMLFLRWGKRFKHGRAGVRPNSDKALNSFLKAAARGSTLAMVDAGLLYWEMGNK +
Sbjct: 121 PLREAMLFLRWGKRFKHGRAGVRPNSDKALNSFLKAAARGSTLAMVDAGLLYWEMGNKGE 180

Query: 183 AIALYQKAADLGDPAAKCNLGISYLQAKPPNPTEAVRWLRQASMAGNIRAQYQLALCLHQ 242
           AIALYQKAADLGDPA KCNLGIS+L AKPPNPTEAVRWLRQ++MAGNIRAQYQLALCLHQ
Sbjct: 181 AIALYQKAADLGDPAGKCNLGISFLHAKPPNPTEAVRWLRQSAMAGNIRAQYQLALCLHQ 240

Query: 243 GHGVDRNVQEAARWFFKAAECGYVRAMYNLSLCYSCGEGMVHNHQQAKKWMKRAADRGHS 302
           GHGVDRNVQEAARWF KAAE GYVRAMYNLSLCYSCGEG+VHNHQQAKKWMKRAADRGHS
Sbjct: 241 GHGVDRNVQEAARWFLKAAEGGYVRAMYNLSLCYSCGEGLVHNHQQAKKWMKRAADRGHS 300

Query: 303 KAQFEHGLRLFSERDMMKAVVYLELATRSGERAAAHVKNAILQQLSQTSRDRAMSLADNW 349
           KAQFEHGL LFSERDMMKAVVYLELATRSGERAAAHVKN ILQQLSQ+SRDR MS+ADNW
Sbjct: 301 KAQFEHGLHLFSERDMMKAVVYLELATRSGERAAAHVKNVILQQLSQSSRDRVMSVADNW 360

[Close]

BLAST of MS000915 vs. NCBI nr
Match: KAG6598237.1 (F-box protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 584.7 bits (1506), Expect = 5.2e-163
Identity = 305/367 (83.11%), Postives = 317/367 (86.38%), Query Frame = 0


Query: 3   MTQRTWPDRSDASPFSSFSLCSMGIRGKAAVQDHD----FSPPIPSHSHSKSSKHAHRFH 62
           M QRTWPDRSDASPFSSFSL S  ++GKAAV+  D    FS    S S S SSK   R H
Sbjct: 1   MKQRTWPDRSDASPFSSFSLSS--VKGKAAVEVDDDVDHFSRHANSISISISSKFPDRLH 60

Query: 63  ASPSSPS-----------------FSALPYDIIIKIAASFNLPNLRVASFVCKSWFEALR 122
           ASPS+ S                 FSALPYD++IKIAASFNLPNLR ASFVCK WFEALR
Sbjct: 61  ASPSTSSSSQTPFFLPPSSFGGQDFSALPYDVLIKIAASFNLPNLRAASFVCKPWFEALR 120

Query: 123 PLREAMLFLRWGKRFKHGRAGVRPNSDKALNSFLKAAARGSTLAMVDAGLLYWEMGNKHQ 182
           PLREAMLFLRWGKRFKHGRAGVRPNSDKALNSFLKAAARGSTLAMVDAGLLYWEMGNK  
Sbjct: 121 PLREAMLFLRWGKRFKHGRAGVRPNSDKALNSFLKAAARGSTLAMVDAGLLYWEMGNKGD 180

Query: 183 AIALYQKAADLGDPAAKCNLGISYLQAKPPNPTEAVRWLRQASMAGNIRAQYQLALCLHQ 242
           AIALYQKAADLGDPA KCNLGIS+L AKPPNPTEAVRWLRQ++MAGNIRAQYQLALCLHQ
Sbjct: 181 AIALYQKAADLGDPAGKCNLGISFLHAKPPNPTEAVRWLRQSAMAGNIRAQYQLALCLHQ 240

Query: 243 GHGVDRNVQEAARWFFKAAECGYVRAMYNLSLCYSCGEGMVHNHQQAKKWMKRAADRGHS 302
           GHGVDRNVQEAARWF KAAE GYVRAMYNLSLCYSCGEG+VHNHQQAKKWMKRAADRGHS
Sbjct: 241 GHGVDRNVQEAARWFLKAAEGGYVRAMYNLSLCYSCGEGLVHNHQQAKKWMKRAADRGHS 300

Query: 303 KAQFEHGLRLFSERDMMKAVVYLELATRSGERAAAHVKNAILQQLSQTSRDRAMSLADNW 349
           KAQFEHGL LFSERDMMKAVVYLELATRSGERAAAHVKN ILQQLSQ+SRDR MS+ADNW
Sbjct: 301 KAQFEHGLHLFSERDMMKAVVYLELATRSGERAAAHVKNVILQQLSQSSRDRVMSVADNW 360

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BLAST of MS000915 vs. ExPASy Swiss-Prot
Match: Q94C27 (F-box protein At1g70590 OS=Arabidopsis thaliana OX=3702 GN=At1g70590 PE=2 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 1.4e-105
Identity = 202/352 (57.39%), Postives = 251/352 (71.31%), Query Frame = 0


Query: 3   MTQRTWPDRSDASPFSSFSLCSMGIRGKAAVQDHDFSPPIPSHSHSKSSKHAHRFHASPS 62
           M QRTWP RS+ S FSS S      + K +           S + S+SS  +    +S  
Sbjct: 1   MKQRTWPCRSEGSRFSSLSFLKPHDKDKRSRISSINKATAKSTTSSRSSSSS----SSSR 60

Query: 63  SPS-----FSALPYDIIIKIAASFNLPNLRVASFVCKSWFEALRPLREAMLFLRWGKRFK 122
            PS     FS LPYDI++KIAA F+ PNL+ AS VCKSW +AL+PLRE+ML +RWGK++K
Sbjct: 61  PPSNEFGDFSMLPYDILMKIAAPFSHPNLQAASLVCKSWRDALKPLRESMLLIRWGKKYK 120

Query: 123 HGRAGVRPNSDKALNSFLKAAARGSTLAMVDAGLLYWEMGNKHQAIALYQKAADLGDPAA 182
           HGR GVR N DKAL+SFLK A RGSTLAMVDAGL+YWE G K +A+ LY++A++LGD   
Sbjct: 121 HGRGGVRANLDKALDSFLKGAMRGSTLAMVDAGLVYWERGEKEKAVNLYRRASELGDAVG 180

Query: 183 KCNLGISYLQAKPPNPTEAVRWLRQASMAGNIRAQYQLALCLHQGHGVDRNVQEAARWFF 242
           +CNLGI+YLQ +P NP EA++WL+Q++  G +RAQYQLALCLH G  V  N+ EA +W+ 
Sbjct: 181 QCNLGIAYLQVQPSNPKEAMKWLKQSAENGYVRAQYQLALCLHHGRVVQTNLLEATKWYL 240

Query: 243 KAAECGYVRAMYNLSLCYSCGEGMVHNHQQAKKWMKRAADRGHSKAQFEHGLRLFSERDM 302
           KAAE GYVRAMYN+SLCYS GEG+  N + A+KWMKRAAD GHSKAQFEHGL LFSE +M
Sbjct: 241 KAAEGGYVRAMYNISLCYSVGEGLPQNRKLARKWMKRAADHGHSKAQFEHGLALFSEGEM 300

Query: 303 MKAVVYLELATRSGERAAAHVKNAILQQLSQT----SRDRAMSLADNWRALP 346
           +K+V+YLELA R GE AA  VK  + QQLS T    +   A+  A+NWR LP
Sbjct: 301 LKSVLYLELAERGGEAAATPVKEVVHQQLSATFGGQAVHHAIHQANNWRPLP 348

[Close]

BLAST of MS000915 vs. ExPASy Swiss-Prot
Match: Q9Z2G6 (Protein sel-1 homolog 1 OS=Mus musculus OX=10090 GN=Sel1l PE=1 SV=2)

HSP 1 Score: 90.1 bits (222), Expect = 5.3e-17
Identity = 63/224 (28.12%), Postives = 107/224 (47.77%), Query Frame = 0


Query: 113 GKRFKHGRAGVRPNSDKALNSFLKAAARGSTLAMVDAGLLYWEMG-----NKHQAIALYQ 172
           G+   HG  GV  N  +A + F  AA  G++ AM   G +Y E       +   A+  ++
Sbjct: 376 GQLHLHGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFK 435

Query: 173 KAADLGDPAAKCNLGISYLQAK--PPNPTEAVRWLRQASMAGNIRAQYQLALCLHQGHGV 232
           KAAD+G+P  +  LG++YL  +    N   A+++ ++A+  G +  Q QL    + G GV
Sbjct: 436 KAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGV 495

Query: 233 DRNVQEAARWFFKAAECGYVRAMYNLSLCYSCGEGMVHNHQQAKKWMKRAADRGHSKAQF 292
            R+ ++A ++F  A++ G++ A YNL+  ++ G G++ +   A +  K   +RG    + 
Sbjct: 496 KRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERL 555

Query: 293 EHGLRLFSERDMMKAVVYLELATRSGERAAAHVKNAILQQLSQT 330
                 + + D   AVV   L    G   A      IL Q   T
Sbjct: 556 MTAYNSYKDEDYNAAVVQYLLLAEQGYEVAQSNAAFILDQREAT 599

[Close]

BLAST of MS000915 vs. ExPASy Swiss-Prot
Match: Q9ESM7 (Protein sel-1 homolog 1 OS=Mesocricetus auratus OX=10036 GN=Sel1l PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 9.0e-17
Identity = 63/224 (28.12%), Postives = 107/224 (47.77%), Query Frame = 0


Query: 113 GKRFKHGRAGVRPNSDKALNSFLKAAARGSTLAMVDAGLLYWEMG-----NKHQAIALYQ 172
           G+   HG  GV  N  +A + F  AA  G++ AM   G +Y E       +   A+  ++
Sbjct: 380 GQLHLHGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFK 439

Query: 173 KAADLGDPAAKCNLGISYLQAK--PPNPTEAVRWLRQASMAGNIRAQYQLALCLHQGHGV 232
           KAAD+G+P  +  LG++YL  +    N   A+++ ++A+  G +  Q QL    + G GV
Sbjct: 440 KAADMGNPVGQSGLGMAYLYGRGIQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGV 499

Query: 233 DRNVQEAARWFFKAAECGYVRAMYNLSLCYSCGEGMVHNHQQAKKWMKRAADRGHSKAQF 292
            R+ ++A ++F  A++ G++ A YNL+  ++ G G++ +   A +  K   +RG    + 
Sbjct: 500 KRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERL 559

Query: 293 EHGLRLFSERDMMKAVVYLELATRSGERAAAHVKNAILQQLSQT 330
                 + + D   AVV   L    G   A      IL Q   T
Sbjct: 560 MTAYNSYKDGDYNAAVVQYLLLAEQGYEVAQSNAAFILDQREAT 603

[Close]

BLAST of MS000915 vs. ExPASy Swiss-Prot
Match: Q80Z70 (Protein sel-1 homolog 1 OS=Rattus norvegicus OX=10116 GN=Sel1l PE=1 SV=2)

HSP 1 Score: 89.4 bits (220), Expect = 9.0e-17
Identity = 63/224 (28.12%), Postives = 107/224 (47.77%), Query Frame = 0


Query: 113 GKRFKHGRAGVRPNSDKALNSFLKAAARGSTLAMVDAGLLYWEMG-----NKHQAIALYQ 172
           G+   HG  GV  N  +A + F  AA  G++ AM   G +Y E       +   A+  ++
Sbjct: 380 GQLHLHGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFK 439

Query: 173 KAADLGDPAAKCNLGISYLQAK--PPNPTEAVRWLRQASMAGNIRAQYQLALCLHQGHGV 232
           KAAD+G+P  +  LG++YL  +    N   A+++ ++A+  G +  Q QL    + G GV
Sbjct: 440 KAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGV 499

Query: 233 DRNVQEAARWFFKAAECGYVRAMYNLSLCYSCGEGMVHNHQQAKKWMKRAADRGHSKAQF 292
            R+ ++A ++F  A++ G++ A YNL+  ++ G G++ +   A +  K   +RG    + 
Sbjct: 500 KRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERL 559

Query: 293 EHGLRLFSERDMMKAVVYLELATRSGERAAAHVKNAILQQLSQT 330
                 + + D   AVV   L    G   A      IL Q   T
Sbjct: 560 MTAYNSYKDDDYNAAVVQYLLLAEQGYEVAQSNAAFILDQREAT 603

[Close]

BLAST of MS000915 vs. ExPASy Swiss-Prot
Match: Q9UBV2 (Protein sel-1 homolog 1 OS=Homo sapiens OX=9606 GN=SEL1L PE=1 SV=3)

HSP 1 Score: 88.6 bits (218), Expect = 1.5e-16
Identity = 61/220 (27.73%), Postives = 106/220 (48.18%), Query Frame = 0


Query: 113 GKRFKHGRAGVRPNSDKALNSFLKAAARGSTLAMVDAGLLYWEMG-----NKHQAIALYQ 172
           G+   HG  GV  N  +A + F  AA  G++ AM   G +Y E       +   A+  ++
Sbjct: 380 GQLHLHGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFK 439

Query: 173 KAADLGDPAAKCNLGISYLQAK--PPNPTEAVRWLRQASMAGNIRAQYQLALCLHQGHGV 232
           KAAD+G+P  +  LG++YL  +    N   A+++ ++A+  G +  Q QL    + G GV
Sbjct: 440 KAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGV 499

Query: 233 DRNVQEAARWFFKAAECGYVRAMYNLSLCYSCGEGMVHNHQQAKKWMKRAADRGHSKAQF 292
            R+ ++A ++F  A++ G++ A YNL+  ++ G G++ +   A +  K   +RG    + 
Sbjct: 500 KRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERL 559

Query: 293 EHGLRLFSERDMMKAVVYLELATRSGERAAAHVKNAILQQ 326
                 + + D   AV+   L    G   A      IL Q
Sbjct: 560 MTAYNSYKDGDYNAAVIQYLLLAEQGYEVAQSNAAFILDQ 599

[Close]

BLAST of MS000915 vs. ExPASy TrEMBL
Match: A0A6J1BRB0 (F-box protein At1g70590 OS=Momordica charantia OX=3673 GN=LOC111004874 PE=4 SV=1)

HSP 1 Score: 691.4 bits (1783), Expect = 1.9e-195
Identity = 343/346 (99.13%), Postives = 344/346 (99.42%), Query Frame = 0


Query: 3   MTQRTWPDRSDASPFSSFSLCSMGIRGKAAVQDHDFSPPIPSHSHSKSSKHAHRFHASPS 62
           MTQRTWPDRSDASPFSSFSLCSMGIRGKAAVQDHDFSPPIPSHSHSKSSKHAHRFHASPS
Sbjct: 1   MTQRTWPDRSDASPFSSFSLCSMGIRGKAAVQDHDFSPPIPSHSHSKSSKHAHRFHASPS 60

Query: 63  SPSFSALPYDIIIKIAASFNLPNLRVASFVCKSWFEALRPLREAMLFLRWGKRFKHGRAG 122
           SPSFSALPYDI+IKIAASFNLPNLRVASFVCKSWFEALRPLREAMLFLRWGKRFKHGRAG
Sbjct: 61  SPSFSALPYDILIKIAASFNLPNLRVASFVCKSWFEALRPLREAMLFLRWGKRFKHGRAG 120

Query: 123 VRPNSDKALNSFLKAAARGSTLAMVDAGLLYWEMGNKHQAIALYQKAADLGDPAAKCNLG 182
           VRPNSDKALNSFLKAAARGSTLAMVDAGLLYWEMGNKHQAIALYQKAADLGDPAAKCNLG
Sbjct: 121 VRPNSDKALNSFLKAAARGSTLAMVDAGLLYWEMGNKHQAIALYQKAADLGDPAAKCNLG 180

Query: 183 ISYLQAKPPNPTEAVRWLRQASMAGNIRAQYQLALCLHQGHGVDRNVQEAARWFFKAAEC 242
           ISYLQAKPPNPTEAVRWLRQAS AGNIRAQYQLALCLHQGHGVDRNVQEAARWFFKAAE 
Sbjct: 181 ISYLQAKPPNPTEAVRWLRQASKAGNIRAQYQLALCLHQGHGVDRNVQEAARWFFKAAEG 240

Query: 243 GYVRAMYNLSLCYSCGEGMVHNHQQAKKWMKRAADRGHSKAQFEHGLRLFSERDMMKAVV 302
           GYVRAMYNLSLCYSCGEGMVHNHQQAKKWMKRAADRGHSKAQFEHGLRLFSERDMMKAVV
Sbjct: 241 GYVRAMYNLSLCYSCGEGMVHNHQQAKKWMKRAADRGHSKAQFEHGLRLFSERDMMKAVV 300

Query: 303 YLELATRSGERAAAHVKNAILQQLSQTSRDRAMSLADNWRALPSSH 349
           YLELATRSGERAAAHVKNAILQQLSQTSRDRAMSLADNWRALPSSH
Sbjct: 301 YLELATRSGERAAAHVKNAILQQLSQTSRDRAMSLADNWRALPSSH 346

[Close]

BLAST of MS000915 vs. ExPASy TrEMBL
Match: A0A6J1KBY6 (F-box protein At1g70590 OS=Cucurbita maxima OX=3661 GN=LOC111491901 PE=4 SV=1)

HSP 1 Score: 585.9 bits (1509), Expect = 1.1e-163
Identity = 302/365 (82.74%), Postives = 318/365 (87.12%), Query Frame = 0


Query: 3   MTQRTWPDRSDASPFSSFSLCSMGIRGKAAVQDHDFSPPIPSHSH--SKSSKHAHRFHAS 62
           M QRTWPDRSDASPFSSFSL +  ++GKAAV+  D       H++  S SSK   R HAS
Sbjct: 1   MPQRTWPDRSDASPFSSFSLSN--VKGKAAVEVEDDVDHFSRHANSISISSKFPDRLHAS 60

Query: 63  PSSPS-----------------FSALPYDIIIKIAASFNLPNLRVASFVCKSWFEALRPL 122
           PS+ S                 FSALPYD++IKIAASFNLPNLR ASFVCK WFEALRPL
Sbjct: 61  PSTSSSSQTPFFLPTSSFGGQDFSALPYDVLIKIAASFNLPNLRAASFVCKPWFEALRPL 120

Query: 123 REAMLFLRWGKRFKHGRAGVRPNSDKALNSFLKAAARGSTLAMVDAGLLYWEMGNKHQAI 182
           REAMLFLRWGKRFKHGRAGVRPNSDKALNSFLKAAARGSTLAMVDAGLLYWEMGNK +AI
Sbjct: 121 REAMLFLRWGKRFKHGRAGVRPNSDKALNSFLKAAARGSTLAMVDAGLLYWEMGNKGEAI 180

Query: 183 ALYQKAADLGDPAAKCNLGISYLQAKPPNPTEAVRWLRQASMAGNIRAQYQLALCLHQGH 242
           ALYQKAADLGDPA KCNLGIS+L AKPPNPTEAVRWLRQ++MAGNIRAQYQLALCLHQGH
Sbjct: 181 ALYQKAADLGDPAGKCNLGISFLHAKPPNPTEAVRWLRQSAMAGNIRAQYQLALCLHQGH 240

Query: 243 GVDRNVQEAARWFFKAAECGYVRAMYNLSLCYSCGEGMVHNHQQAKKWMKRAADRGHSKA 302
           GVDRNVQEAARWFFKAAE GYVRAMYNLSLCYSCGEG+VHNHQQAKKWMKRAADRGHSKA
Sbjct: 241 GVDRNVQEAARWFFKAAEGGYVRAMYNLSLCYSCGEGLVHNHQQAKKWMKRAADRGHSKA 300

Query: 303 QFEHGLRLFSERDMMKAVVYLELATRSGERAAAHVKNAILQQLSQTSRDRAMSLADNWRA 349
           QFEHGL LFSERDMMKAVVYLELATRSGERAAAHVKN ILQQLSQ+SRDR MS+ADNWRA
Sbjct: 301 QFEHGLHLFSERDMMKAVVYLELATRSGERAAAHVKNVILQQLSQSSRDRVMSVADNWRA 360

[Close]

BLAST of MS000915 vs. ExPASy TrEMBL
Match: A0A6J1HG36 (F-box protein At1g70590 OS=Cucurbita moschata OX=3662 GN=LOC111462677 PE=4 SV=1)

HSP 1 Score: 582.4 bits (1500), Expect = 1.2e-162
Identity = 300/365 (82.19%), Postives = 316/365 (86.58%), Query Frame = 0


Query: 3   MTQRTWPDRSDASPFSSFSLCSMGIRGKAAVQDHDFSPPIPSHSH--SKSSKHAHRFHAS 62
           M QRTWPDRSDASPFSSFSL +  ++GKAAV+  D       H++  S SSK   R HAS
Sbjct: 1   MKQRTWPDRSDASPFSSFSLSN--VKGKAAVEAEDDVDHFSRHANSISISSKFPDRLHAS 60

Query: 63  PSSPS-----------------FSALPYDIIIKIAASFNLPNLRVASFVCKSWFEALRPL 122
           PS+ S                 FSALPYD++IKIAASFNLPNLR ASFVCK WFEALRPL
Sbjct: 61  PSTSSSSQTPFFLPPSSFGGQDFSALPYDVLIKIAASFNLPNLRAASFVCKPWFEALRPL 120

Query: 123 REAMLFLRWGKRFKHGRAGVRPNSDKALNSFLKAAARGSTLAMVDAGLLYWEMGNKHQAI 182
           REAMLFLRWGKRFKHGRAGVRPNSDKALNSFLKAAARGSTLAMVDAGLLYWEMGNK +AI
Sbjct: 121 REAMLFLRWGKRFKHGRAGVRPNSDKALNSFLKAAARGSTLAMVDAGLLYWEMGNKGEAI 180

Query: 183 ALYQKAADLGDPAAKCNLGISYLQAKPPNPTEAVRWLRQASMAGNIRAQYQLALCLHQGH 242
           ALYQKAADLGDPA KCNLGIS+L AKPPNPTEAVRWLRQ++M GNIRAQYQLALCLHQGH
Sbjct: 181 ALYQKAADLGDPAGKCNLGISFLHAKPPNPTEAVRWLRQSAMVGNIRAQYQLALCLHQGH 240

Query: 243 GVDRNVQEAARWFFKAAECGYVRAMYNLSLCYSCGEGMVHNHQQAKKWMKRAADRGHSKA 302
           GVDRNVQEAARWF KAAE GYVRAMYNLSLCYSCGEG+VHNHQQAKKWMKRAADRGHSKA
Sbjct: 241 GVDRNVQEAARWFLKAAEGGYVRAMYNLSLCYSCGEGLVHNHQQAKKWMKRAADRGHSKA 300

Query: 303 QFEHGLRLFSERDMMKAVVYLELATRSGERAAAHVKNAILQQLSQTSRDRAMSLADNWRA 349
           QFEHGL LFSERDMMKAVVYLELATRSGERAAAHVKN ILQQLSQ+SRDR MS+ADNWRA
Sbjct: 301 QFEHGLHLFSERDMMKAVVYLELATRSGERAAAHVKNVILQQLSQSSRDRVMSVADNWRA 360

[Close]

BLAST of MS000915 vs. ExPASy TrEMBL
Match: A0A5A7UYL2 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G002010 PE=4 SV=1)

HSP 1 Score: 566.2 bits (1458), Expect = 9.3e-158
Identity = 293/376 (77.93%), Postives = 315/376 (83.78%), Query Frame = 0


Query: 3   MTQRTWPDRSDASPFSSFSLCSMGIRGKAA--VQDHDFSPP----IPSH-------SHSK 62
           M QRTWP RSDASPFSSFSL    ++GKAA  V DH  + P    + +H       S+SK
Sbjct: 1   MWQRTWPHRSDASPFSSFSLSK--LKGKAAIHVDDHHHADPDEEDVDAHHFSRHTLSNSK 60

Query: 63  SSKHAHRFHASPSSPS-----------------FSALPYDIIIKIAASFNLPNLRVASFV 122
           S+   H  H SPS+ S                 FSALPYD++IKIAASFNLPNLR ASFV
Sbjct: 61  STNFTHTVHPSPSTSSSSQTPFWVRPSSLPSHDFSALPYDVLIKIAASFNLPNLRAASFV 120

Query: 123 CKSWFEALRPLREAMLFLRWGKRFKHGRAGVRPNSDKALNSFLKAAARGSTLAMVDAGLL 182
           CK+WFEA RPLREAMLFLRWGKRFKHGR GVRPNSDKALNSFLK AARGSTLAMVDAGLL
Sbjct: 121 CKAWFEAFRPLREAMLFLRWGKRFKHGRGGVRPNSDKALNSFLKGAARGSTLAMVDAGLL 180

Query: 183 YWEMGNKHQAIALYQKAADLGDPAAKCNLGISYLQAKPPNPTEAVRWLRQASMAGNIRAQ 242
           YWEMGNK++AIALYQKAADLGDP+AKCNLGIS+L AKPPNPTEAV+WLRQASM GN+RAQ
Sbjct: 181 YWEMGNKYEAIALYQKAADLGDPSAKCNLGISFLHAKPPNPTEAVKWLRQASMVGNVRAQ 240

Query: 243 YQLALCLHQGHGVDRNVQEAARWFFKAAECGYVRAMYNLSLCYSCGEGMVHNHQQAKKWM 302
           YQLALCL QG+GVDRNVQEAARWFFKAAE GYVRAMYNLSLCYSCGEG+VHNHQQAKKWM
Sbjct: 241 YQLALCLQQGNGVDRNVQEAARWFFKAAEGGYVRAMYNLSLCYSCGEGLVHNHQQAKKWM 300

Query: 303 KRAADRGHSKAQFEHGLRLFSERDMMKAVVYLELATRSGERAAAHVKNAILQQLSQTSRD 349
           KRAADRGHSKAQFEHGL LFSERDMMKAVVYLELATRSGERAA HVK+ ILQQLSQ+SRD
Sbjct: 301 KRAADRGHSKAQFEHGLHLFSERDMMKAVVYLELATRSGERAAGHVKSVILQQLSQSSRD 360

[Close]

BLAST of MS000915 vs. ExPASy TrEMBL
Match: A0A1S3B9P3 (F-box protein At1g70590 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487719 PE=4 SV=1)

HSP 1 Score: 566.2 bits (1458), Expect = 9.3e-158
Identity = 293/376 (77.93%), Postives = 315/376 (83.78%), Query Frame = 0


Query: 3   MTQRTWPDRSDASPFSSFSLCSMGIRGKAA--VQDHDFSPP----IPSH-------SHSK 62
           M QRTWP RSDASPFSSFSL    ++GKAA  V DH  + P    + +H       S+SK
Sbjct: 1   MWQRTWPHRSDASPFSSFSLSK--LKGKAAIHVDDHHHADPDEEDVDAHHFSRHTLSNSK 60

Query: 63  SSKHAHRFHASPSSPS-----------------FSALPYDIIIKIAASFNLPNLRVASFV 122
           S+   H  H SPS+ S                 FSALPYD++IKIAASFNLPNLR ASFV
Sbjct: 61  STNFTHTVHPSPSTSSSSQTPFWVRPSSLPSHDFSALPYDVLIKIAASFNLPNLRAASFV 120

Query: 123 CKSWFEALRPLREAMLFLRWGKRFKHGRAGVRPNSDKALNSFLKAAARGSTLAMVDAGLL 182
           CK+WFEA RPLREAMLFLRWGKRFKHGR GVRPNSDKALNSFLK AARGSTLAMVDAGLL
Sbjct: 121 CKAWFEAFRPLREAMLFLRWGKRFKHGRGGVRPNSDKALNSFLKGAARGSTLAMVDAGLL 180

Query: 183 YWEMGNKHQAIALYQKAADLGDPAAKCNLGISYLQAKPPNPTEAVRWLRQASMAGNIRAQ 242
           YWEMGNK++AIALYQKAADLGDP+AKCNLGIS+L AKPPNPTEAV+WLRQASM GN+RAQ
Sbjct: 181 YWEMGNKYEAIALYQKAADLGDPSAKCNLGISFLHAKPPNPTEAVKWLRQASMVGNVRAQ 240

Query: 243 YQLALCLHQGHGVDRNVQEAARWFFKAAECGYVRAMYNLSLCYSCGEGMVHNHQQAKKWM 302
           YQLALCL QG+GVDRNVQEAARWFFKAAE GYVRAMYNLSLCYSCGEG+VHNHQQAKKWM
Sbjct: 241 YQLALCLQQGNGVDRNVQEAARWFFKAAEGGYVRAMYNLSLCYSCGEGLVHNHQQAKKWM 300

Query: 303 KRAADRGHSKAQFEHGLRLFSERDMMKAVVYLELATRSGERAAAHVKNAILQQLSQTSRD 349
           KRAADRGHSKAQFEHGL LFSERDMMKAVVYLELATRSGERAA HVK+ ILQQLSQ+SRD
Sbjct: 301 KRAADRGHSKAQFEHGLHLFSERDMMKAVVYLELATRSGERAAGHVKSVILQQLSQSSRD 360

[Close]

BLAST of MS000915 vs. TAIR 10
Match: AT1G70590.1 (F-box family protein )

HSP 1 Score: 384.4 bits (986), Expect = 9.6e-107
Identity = 202/352 (57.39%), Postives = 251/352 (71.31%), Query Frame = 0


Query: 3   MTQRTWPDRSDASPFSSFSLCSMGIRGKAAVQDHDFSPPIPSHSHSKSSKHAHRFHASPS 62
           M QRTWP RS+ S FSS S      + K +           S + S+SS  +    +S  
Sbjct: 1   MKQRTWPCRSEGSRFSSLSFLKPHDKDKRSRISSINKATAKSTTSSRSSSSS----SSSR 60

Query: 63  SPS-----FSALPYDIIIKIAASFNLPNLRVASFVCKSWFEALRPLREAMLFLRWGKRFK 122
            PS     FS LPYDI++KIAA F+ PNL+ AS VCKSW +AL+PLRE+ML +RWGK++K
Sbjct: 61  PPSNEFGDFSMLPYDILMKIAAPFSHPNLQAASLVCKSWRDALKPLRESMLLIRWGKKYK 120

Query: 123 HGRAGVRPNSDKALNSFLKAAARGSTLAMVDAGLLYWEMGNKHQAIALYQKAADLGDPAA 182
           HGR GVR N DKAL+SFLK A RGSTLAMVDAGL+YWE G K +A+ LY++A++LGD   
Sbjct: 121 HGRGGVRANLDKALDSFLKGAMRGSTLAMVDAGLVYWERGEKEKAVNLYRRASELGDAVG 180

Query: 183 KCNLGISYLQAKPPNPTEAVRWLRQASMAGNIRAQYQLALCLHQGHGVDRNVQEAARWFF 242
           +CNLGI+YLQ +P NP EA++WL+Q++  G +RAQYQLALCLH G  V  N+ EA +W+ 
Sbjct: 181 QCNLGIAYLQVQPSNPKEAMKWLKQSAENGYVRAQYQLALCLHHGRVVQTNLLEATKWYL 240

Query: 243 KAAECGYVRAMYNLSLCYSCGEGMVHNHQQAKKWMKRAADRGHSKAQFEHGLRLFSERDM 302
           KAAE GYVRAMYN+SLCYS GEG+  N + A+KWMKRAAD GHSKAQFEHGL LFSE +M
Sbjct: 241 KAAEGGYVRAMYNISLCYSVGEGLPQNRKLARKWMKRAADHGHSKAQFEHGLALFSEGEM 300

Query: 303 MKAVVYLELATRSGERAAAHVKNAILQQLSQT----SRDRAMSLADNWRALP 346
           +K+V+YLELA R GE AA  VK  + QQLS T    +   A+  A+NWR LP
Sbjct: 301 LKSVLYLELAERGGEAAATPVKEVVHQQLSATFGGQAVHHAIHQANNWRPLP 348

[Close]

BLAST of MS000915 vs. TAIR 10
Match: AT1G18260.1 (HCP-like superfamily protein )

HSP 1 Score: 70.5 bits (171), Expect = 3.1e-12
Identity = 64/228 (28.07%), Postives = 100/228 (43.86%), Query Frame = 0


Query: 113 GKRFKHGRAGVRPNSDKALNSFLKAAARGSTLAMVDAGLLYWEMGNKHQAIALYQKAADL 172
           G  +  G  G+R +  KAL+ FLKA  +G   +M   G +Y       +    Y KA + 
Sbjct: 249 GLFYYFGLRGLRRDHTKALHWFLKAVDKGEPRSMELLGEIYARGAGVERN---YTKALEW 308

Query: 173 GDPAAKCNL-----GISYLQAK-----PPNPTEAVRWLRQASMAGNIRAQYQLALCLHQG 232
              AAK  L     GI YL  K       N T+A  +  +A    +    Y L +   +G
Sbjct: 309 LTLAAKEGLYSAFNGIGYLYVKGYGVDKKNYTKAREYFEKAVDNEDPSGHYNLGVLYLKG 368

Query: 233 HGVDRNVQEAARWFFKAAECGYVRAMYNLSLCYSCGEGMVHNHQQAKKWMKRAADRGHSK 292
            GV+R+V++A ++FF AA  G  +A Y L+  +  G G+  N + A  + K  A+RG   
Sbjct: 369 IGVNRDVRQATKYFFVAANAGQPKAFYQLAKMFHTGVGLKKNLEMATSFYKLVAERGPWS 428

Query: 293 AQFEHGLRLFSERDMMKAVVYLELATRSGERAAAHVKNAILQQLSQTS 331
           +     L  + + D+ KA++        G   A      IL +  + S
Sbjct: 429 SLSRWALEAYLKGDVGKALILYSRMAEMGYEVAQSNAAWILDKYGERS 473

[Close]

BLAST of MS000915 vs. TAIR 10
Match: AT1G73570.1 (HCP-like superfamily protein )

HSP 1 Score: 53.1 bits (126), Expect = 5.1e-07
Identity = 72/286 (25.17%), Postives = 114/286 (39.86%), Query Frame = 0


Query: 46  SHSKSSKHAHRFHASPSSPSFSALP--------YDIIIKIAASFNLPNLRVASFVCKSWF 105
           S SKS  H H   A  +  S  AL         YD  +++ A   L    V SF+     
Sbjct: 144 SRSKSILHHHFAAAGGNMQSKMALAFRYLRQNMYDKAVELYA--ELAETAVNSFL----I 203

Query: 106 EALRPLREAMLFLRWGKRFKHGRAGVRPNSDKALNSFLKAAARGSTLAMVDAGLLYW--- 165
               P+ E +      +  K      R   D+        A +G+++AM   GL Y+   
Sbjct: 204 SKDSPMAEPVRIHIGTEENKDALRKSRGEEDEDFQILEYQAEKGNSVAMHKIGLFYYFGL 263

Query: 166 EMGNKHQAIALYQKAADLGDPAAKCNLGISYLQAK-----PPNPTEAVRWLRQASMAGNI 225
               +  A ALY  +       A+ N G+ YL  K       N T+A  +   A+   + 
Sbjct: 264 RGLRRDHAKALYWFS------KAEFN-GLGYLYVKGYGVDKRNYTKAREYFEMAANNEDP 323

Query: 226 RAQYQLALCLHQGHGVDRNVQEAARWFFKAAECGYVRAMYNLSLCYSCGEGMVHNHQQAK 285
              Y L +   +G GV ++V+ A ++FF AA  G  +A Y L+  +  G G+  N + A 
Sbjct: 324 SGHYNLGVLYLKGTGVKKDVRHATKYFFVAANAGQPKAFYQLAKMFHTGVGLTKNLEMAT 383

Query: 286 KWMKRAADRGHSKAQFEHGLRLFSERDMMKAVVYLELATRSGERAA 316
            + K  A+RG   +     L  + + D+ KA +     +  G   A
Sbjct: 384 TFYKLVAERGPWSSLSRWALEAYLKGDVGKAFILYSRMSELGYEVA 416

The following BLAST results are available for this feature:

BLAST of MS000915 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131804.1	3.9e-195	99.13	F-box protein At1g70590 [Momordica charantia] >XP_022131805.1 F-box protein At1g...	[more]
XP_023545562.1	4.2e-165	83.20	F-box protein At1g70590 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022996767.1	2.3e-163	82.74	F-box protein At1g70590 [Cucurbita maxima] >XP_022996768.1 F-box protein At1g705...	[more]
KAG7029215.1	3.0e-163	83.11	F-box protein [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6598237.1	5.2e-163	83.11	F-box protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of MS000915 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94C27	1.4e-105	57.39	F-box protein At1g70590 OS=Arabidopsis thaliana OX=3702 GN=At1g70590 PE=2 SV=1	[more]
Q9Z2G6	5.3e-17	28.13	Protein sel-1 homolog 1 OS=Mus musculus OX=10090 GN=Sel1l PE=1 SV=2	[more]
Q9ESM7	9.0e-17	28.13	Protein sel-1 homolog 1 OS=Mesocricetus auratus OX=10036 GN=Sel1l PE=2 SV=1	[more]
Q80Z70	9.0e-17	28.13	Protein sel-1 homolog 1 OS=Rattus norvegicus OX=10116 GN=Sel1l PE=1 SV=2	[more]
Q9UBV2	1.5e-16	27.73	Protein sel-1 homolog 1 OS=Homo sapiens OX=9606 GN=SEL1L PE=1 SV=3	[more]

BLAST of MS000915 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BRB0	1.9e-195	99.13	F-box protein At1g70590 OS=Momordica charantia OX=3673 GN=LOC111004874 PE=4 SV=1	[more]
A0A6J1KBY6	1.1e-163	82.74	F-box protein At1g70590 OS=Cucurbita maxima OX=3661 GN=LOC111491901 PE=4 SV=1	[more]
A0A6J1HG36	1.2e-162	82.19	F-box protein At1g70590 OS=Cucurbita moschata OX=3662 GN=LOC111462677 PE=4 SV=1	[more]
A0A5A7UYL2	9.3e-158	77.93	F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G002010...	[more]
A0A1S3B9P3	9.3e-158	77.93	F-box protein At1g70590 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487719 PE=4 ...	[more]

BLAST of MS000915 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G70590.1	9.6e-107	57.39	F-box family protein	[more]
AT1G18260.1	3.1e-12	28.07	HCP-like superfamily protein	[more]
AT1G73570.1	5.1e-07	25.17	HCP-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006597	Sel1-like repeat	SMART	SM00671	sel1	coord: 281..312 e-value: 360.0 score: 0.2 coord: 245..280 e-value: 1.6E-6 score: 37.7 coord: 209..244 e-value: 4.6E-8 score: 42.8 coord: 143..174 e-value: 1.4 score: 17.9 coord: 104..142 e-value: 18.0 score: 11.5 coord: 175..208 e-value: 0.003 score: 26.8
IPR006597	Sel1-like repeat	PFAM	PF08238	Sel1	coord: 176..208 e-value: 0.0096 score: 16.6 coord: 246..280 e-value: 1.8E-7 score: 31.6 coord: 286..311 e-value: 140.0 score: 3.4 coord: 210..244 e-value: 2.0E-8 score: 34.7 coord: 113..142 e-value: 12.0 score: 6.7 coord: 148..174 e-value: 0.015 score: 16.0
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 94..344 e-value: 2.1E-49 score: 170.2
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 64..98 e-value: 0.001 score: 18.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..63
None	No IPR available	PANTHER	PTHR45088	OSJNBA0022H21.17 PROTEIN	coord: 3..347
None	No IPR available	SUPERFAMILY	81901	HCP-like	coord: 126..315
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 53..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000915.1	MS000915.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding