MS000899 (gene) Bitter gourd (TR) v1

Overview


Name	MS000899
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RNA-binding protein 48
Location	scaffold36: 150137 .. 154505 (+)
RNA-Seq Expression	MS000899
Synteny	MS000899

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCGCTACACAAATGAGCCCCCTGCGGTTCGCGTCTATGCGATTTGCGACGAGTCAAGGTTATGCTCCGCCTCTGTTATTTCTCCTCTGCAGAATCGAAGATCTATGACTTGCTCATATTTACTTGTTCTTTGTGAAATCCAACAGGTATTTGATTGTAAGGAATGTTCCGGCATTGGGTTGCGGAGATGACTTGCTCAAATTGTTTTCCTCCTACGGAAACGTTGAAGAGTATGACTTTCATTTTTTGTTTTCTTTTAGACTCGTCTTTACATGCTTTTTCTTTAGCCTGCTATGTTAATTTGCCTCAGTAGCCACATGTATTGCCATTTCATGTTGAAAGCCTTTGTTAATTGTTATACCGTCCGTTGCAAAATTTTCCAACTCATGAGAAATTTTCTATTGTTCTTTCTTTTCTTTTTGGAAGGGGCCTGTGGAGCCATCCGGCAATGGCATAAATAGTTCTTTACCCGGTCACGGCATATAATTGTTTCATGTTTTCCCTGTTGGATTAGCTTCTAATAATTTCATTTCCCTCTCTAGATCGGAAAAATCTATAACAGCTCGTATGCCTCATATTTTCCTTTTATCTTATTTGATACTCTGTCAGGTGTAAACCAATGGATGCAGAAGAATGCGATGAATTTACAGATGTTTATTTTATCAAATTTCACTTGGTTAACAATGCCAGGTTAGTTGGTTCTCTTTTGATTAAAAGCATGCGCTAGACTCCCCCGACCCCCCCGGGACAAAAATTTCTTAATCATTTATGCTCTTTATTCAACTGTAAAAGAATTGAACTATAATGATTTCATTTTTAGGTTTGCAAAAAGAAAATTGGATGAGTTTGTTTTCCTTGGTAATCGGCTGCAAGTCTCTTATGCTCCTGAGTTTGAAAGCTTGCTCGATACAAAAGAAAAGCTAGAAGTCAGGAGACGAGAAGTTTTAGCACGATTGAATCGTAAGTTTTTGTGTGTGTGAAATGTAGCTTTGGCCTTTTTTATGCATATAATAGGGAGATATTGTTTTGAGTACATGTGGAAGGCATTAATTTAAAAATCCAAGAAATGAACATTATAATAGGGAAATGGTGTTTCCTTCTAATTAGTTCACTTTTAAGCATGTTATAATTTTGATATCAGTTGGAAGATCAAAGGGATCCTCAGTCAGATCAACTGCCACAGATCTTTCAAATCCTTCACACTCTCATTATGCACTTGAACAGAAGTACTCTCTTGAAAAGAGGTATAAACAAATGAAAATTTGCAGTTTCTTCAAACTCGCAAAATTGTTTTAACTGTCCTTTTCTTGGTAGGAATTATGGAGATGCAGCACTCATTTCCAACCCACGTGTTTCTCAAATGACAAAAGTATCCTCCGACCAGGTTTGTTATTATAGTTGTTTTCCTTCCCTTCTCATGTCATCTTTTATGTTATAGTTGTTATTAACAATGCTAGGGGACAATTATTATTCATGTGTTCTTTTAGTTCATGTTTTCTCTTTTACATGATGAAATTTGAACATAGTTTCAATACTTGTGCTGCAATATGGGTATGAGGAGTTCAATCCAACTGGCTCCATGATCACTTTGGAAGGCTCATGCAAGTGTGATAGGCACAAAATTAGGAAGTCTAGAGTGTTTCTCCTTTATTTTTTATTGGGCACAAAAATTTCCAGGCATTTGGGAAAGTCTAGACTCTCCCAACCATCTCCAGATTTTTCCTTTGGCTTTTGCAGTAATAGCAAACTTGGCCATTTTTACAAAATATTAGTGGTATATCTATATCAATGATGTACTTTATATTAGGTATATCAATGATATACTTTGTCCATGATGCAAAAATAGTATATCAGTCATATACTTTATATTGGTACATCACTAATCGACTTTATCAAGGATACAAAAATGGTATATCGATTGTTCTAAAGAAATAAAAAATGGTATATCAATAATATATTGTATATTGATATATTTTATCAATTGTAGAAAAATGGTAGTATATAAGTTATATAGAAGAATTATCATATTGAAAAATGATTTTTAAGTGTGACATATTTGCAAATGTAGAAACTAGTTTTACCACCTATTATAATTTCCCTTCTTCCTTTCTTTCCCCGTTCAATCCTTGCCCTTTTACTGCTTCAGCCAAATTAGTTAGATAACTACCCATAGTTATTTGATATCAACTTAGTCATGCCAGTGGGCTAACAATACTAACTATCGACTCTATGACCTGCCTTGTCTGGCATGAGTAATTGGTATATAGGTGACTGTACGATGAGGTGTGCTCTAAATTTCTGTGTTTTTATCACTCCATTTTGGTATTCAAGAATTCAACTAGTACATTAATAGAAATAGACACAATATAGTTGCCACCAATTCTTCGATAGCAACGTCTTCAATTGTTGGTGCTTCGAGATTCTCATCAATGCATAGTTCTATGAGTTGGAAGAATCTTTACTTCAAATATCTGTTTTGTATTTTGGGTCAAATTTGTATGACCAAAATATTTAAAGCAAATGGCATCATTTTTCTCTTGCCAAGAATCACCGAACCACTTGGAATTGCCTCATAAATTACCCAAGCATCAATATTCAAATCAAATTTCATACTCTAGATTCTTCCTCAAATTCATTGTTGGAGATATTTCCATCAATTTCGATTACCTCTTCAAAACTATCTCTAAAATAATTTTCAATTTCTTCAAATTCAATCGAGTGTGCAATGAATCACATTACAATATGTTCAAGAGGGCAGATGCCCCTACCTTTTTTCCCCCTTTGGAAATGGGATTTTGGTGATCTCAGGCAAAGAGGGGTGGAAAGAGGTCCAACTACACCTTAGAGAAATGAGCATGATGCATTGGAGACTTTCCATCGAATTTGGATTTGAAGATTCGAAGGTAGTGGGATTTAGTGTCAGCACTCACTGATTTTTATACCCGTGTATATGAAGCAATAGCTTCTTGGTGGTGGATCCATGATGAAGATGACGTGGTTTGGAAACATAATTGGTATTAAGCCGGTTGGTGGAAACTGGGGGTAGGGGCCTTGGTTTTATCTAGATGAAGCAAGAGCCTCTTGGTGGATCAATTGTGGAACGTTGAAGTGTATAATGTTTGAGGATGTGGTTTTGCATCCGAGTGTGGAGGTAATAATTTTCTGAATCCAGACTGGTCTTGATGATGTGGTGAAGAAGATGAGTATGGAGGTGATGGAAAAAATACTTCATTAGTCTGTGAATCTAACAAATTGTGCTCACTCCACCTCCAGTATCTAAACTCCAACCATCATTTATGGCCATCCTACCTTTTAGGAACAGCCAAGTGTTCTGATTCCAAACTAATGCAATGAGTTTTCGTGATTAAGTCAAATCCATGACAAAAAAGGGAAAACTCCCAAAATGAGAGAAACTCTCTATACTCTAAATTCTTTAATTTTGAAAAATTTTCTAAGACAATCCAACTGTGGGCTATTTAACCTTACAAGAAAATGAAAATAACTAAAAATCCTGAAAGATTAATTGTCTAATAAATTTAAGTTAACTTACTCAGATTGACAATTTAGTTAATAAAAAAATAACTAATTAACTATATCAAAATAAGCTATTAGGCTAGTTATATAATTGCTTGCTTCCTACACCACTCCCCACTTTCTTATAGTAGTTGATTGCCATTGTAGACTTCTAGGGTCTACAAATAATGTGTTGCTCTCATTATGGTCCTGCTCTAATTATTTGAAAGGTAATTTTGTTTCATCACATAGATGATTTTTAAGTTGCCTTCTCCATTCAAGGAGTGCAAACTCACGGTTTACCGAATTGCCTTTTTTCCCCCTTGACATTTTCTTATGAAATCTTAAAATAAAATCATGGTCTTGTTAAAACTAGGAATGTTTTTCTAAAGGACCTGTTGGTGGCATGGTTAGTCGTTGATGCCACTAGGGGTTGGGTCTAGGGTAGGAAGGTTTAGGTATCATCCTTGATAATCGTCTTGAATCTTCCGTTTCTGGGTGAAGATATGGATTGAACATTTGTTGACGTTTACTTCTTTGTTTATTTTTATTTCTGTTATCGTCCTTGTTGGGTAGCCTGTTGTAGATTTTCTTTTGGCTAAAAATGTGACTTTTTTCTCGAGTGTACAGGATTACTTCGCATCTGAATCTATGAATCAAACTGTACATCTCGTCAGGGAAAAGCTTGATCAGGTGATAGAATTCCTTTGTGTTATGGTTTATTTTCAACATGTGAGAAAACTGTAATATAAACATTGCTTATTATTTGTGTTTTAGATTCAATCAAGCAGTGAACATCTGCAAGCTGGACCCGTGAGCAAGAAGTCACGTGTGGACAACAGAAGGAGAATT

mRNA sequence

ATGCCTCGCTACACAAATGAGCCCCCTGCGGTTCGCGTCTATGCGATTTGCGACGAGTCAAGGTATTTGATTGTAAGGAATGTTCCGGCATTGGGTTGCGGAGATGACTTGCTCAAATTGTTTTCCTCCTACGGAAACGTTGAAGAGTGTAAACCAATGGATGCAGAAGAATGCGATGAATTTACAGATGTTTATTTTATCAAATTTCACTTGGTTAACAATGCCAGGTTTGCAAAAAGAAAATTGGATGAGTTTGTTTTCCTTGGTAATCGGCTGCAAGTCTCTTATGCTCCTGAGTTTGAAAGCTTGCTCGATACAAAAGAAAAGCTAGAAGTCAGGAGACGAGAAGTTTTAGCACGATTGAATCTTGGAAGATCAAAGGGATCCTCAGTCAGATCAACTGCCACAGATCTTTCAAATCCTTCACACTCTCATTATGCACTTGAACAGAAGTACTCTCTTGAAAAGAGGAATTATGGAGATGCAGCACTCATTTCCAACCCACGTGTTTCTCAAATGACAAAAGTATCCTCCGACCAGGATTACTTCGCATCTGAATCTATGAATCAAACTGTACATCTCGTCAGGGAAAAGCTTGATCAGATTCAATCAAGCAGTGAACATCTGCAAGCTGGACCCGTGAGCAAGAAGTCACGTGTGGACAACAGAAGGAGAATT

Coding sequence (CDS)

ATGCCTCGCTACACAAATGAGCCCCCTGCGGTTCGCGTCTATGCGATTTGCGACGAGTCAAGGTATTTGATTGTAAGGAATGTTCCGGCATTGGGTTGCGGAGATGACTTGCTCAAATTGTTTTCCTCCTACGGAAACGTTGAAGAGTGTAAACCAATGGATGCAGAAGAATGCGATGAATTTACAGATGTTTATTTTATCAAATTTCACTTGGTTAACAATGCCAGGTTTGCAAAAAGAAAATTGGATGAGTTTGTTTTCCTTGGTAATCGGCTGCAAGTCTCTTATGCTCCTGAGTTTGAAAGCTTGCTCGATACAAAAGAAAAGCTAGAAGTCAGGAGACGAGAAGTTTTAGCACGATTGAATCTTGGAAGATCAAAGGGATCCTCAGTCAGATCAACTGCCACAGATCTTTCAAATCCTTCACACTCTCATTATGCACTTGAACAGAAGTACTCTCTTGAAAAGAGGAATTATGGAGATGCAGCACTCATTTCCAACCCACGTGTTTCTCAAATGACAAAAGTATCCTCCGACCAGGATTACTTCGCATCTGAATCTATGAATCAAACTGTACATCTCGTCAGGGAAAAGCTTGATCAGATTCAATCAAGCAGTGAACATCTGCAAGCTGGACCCGTGAGCAAGAAGTCACGTGTGGACAACAGAAGGAGAATT

Protein sequence

MPRYTNEPPAVRVYAICDESRYLIVRNVPALGCGDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFIKFHLVNNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLNLGRSKGSSVRSTATDLSNPSHSHYALEQKYSLEKRNYGDAALISNPRVSQMTKVSSDQDYFASESMNQTVHLVREKLDQIQSSSEHLQAGPVSKKSRVDNRRRI

Homology

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BLAST of MS000899 vs. NCBI nr
Match: XP_022132316.1 (RNA-binding protein 48-like [Momordica charantia])

HSP 1 Score: 447.2 bits (1149), Expect = 8.4e-122
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MPRYTNEPPAVRVYAICDESRYLIVRNVPALGCGDDLLKLFSSYGNVEECKPMDAEECDE 60
           MPRYTNEPPAVRVYAICDESRYLIVRNVPALGCGDDLLKLFSSYGNVEECKPMDAEECDE
Sbjct: 1   MPRYTNEPPAVRVYAICDESRYLIVRNVPALGCGDDLLKLFSSYGNVEECKPMDAEECDE 60

Query: 61  FTDVYFIKFHLVNNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLAR 120
           FTDVYFIKFHLVNNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLAR
Sbjct: 61  FTDVYFIKFHLVNNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLAR 120

Query: 121 LNLGRSKGSSVRSTATDLSNPSHSHYALEQKYSLEKRNYGDAALISNPRVSQMTKVSSDQ 180
           LNLGRSKGSSVRSTATDLSNPSHSHYALEQKYSLEKRNYGDAALISNPRVSQMTKVSSDQ
Sbjct: 121 LNLGRSKGSSVRSTATDLSNPSHSHYALEQKYSLEKRNYGDAALISNPRVSQMTKVSSDQ 180

Query: 181 DYFASESMNQTVHLVREKLDQIQSSSEHLQAGPVSKKSRVDNRRRI 227
           DYFASESMNQTVHLVREKLDQIQSSSEHLQAGPVSKKSRVDNRRRI
Sbjct: 181 DYFASESMNQTVHLVREKLDQIQSSSEHLQAGPVSKKSRVDNRRRI 226

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BLAST of MS000899 vs. NCBI nr
Match: XP_022152542.1 (RNA-binding protein 48-like [Momordica charantia])

HSP 1 Score: 406.4 bits (1043), Expect = 1.6e-109
Identity = 203/226 (89.82%), Postives = 216/226 (95.58%), Query Frame = 0


Query: 1   MPRYTNEPPAVRVYAICDESRYLIVRNVPALGCGDDLLKLFSSYGNVEECKPMDAEECDE 60
           MPRYT+E PAVRVY ICDESR+LIVRNVPALGCGDDLLKLFSSYGNVEECKPMDAEECDE
Sbjct: 1   MPRYTDEHPAVRVYTICDESRFLIVRNVPALGCGDDLLKLFSSYGNVEECKPMDAEECDE 60

Query: 61  FTDVYFIKFHLVNNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLAR 120
           FTDVYF+KFHLV NARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLAR
Sbjct: 61  FTDVYFVKFHLVANARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLAR 120

Query: 121 LNLGRSKGSSVRSTATDLSNPSHSHYALEQKYSLEKRNYGDAALISNPRVSQMTKVSSDQ 180
           L+ GRSKGS+VRST T L+NP+HSHY LEQK SLEKRNYGDAALI+NP VSQMTKVSSDQ
Sbjct: 121 LDSGRSKGSAVRSTTTKLTNPAHSHYTLEQKNSLEKRNYGDAALIANPHVSQMTKVSSDQ 180

Query: 181 DYFASESMNQTVHLVREKLDQIQSSSEHLQAGPVSKKSRVDNRRRI 227
           D+FASESMN+TVHLVREKLD+IQSSSEHL+ GP+SKKSRVDNRRRI
Sbjct: 181 DHFASESMNRTVHLVREKLDKIQSSSEHLEGGPMSKKSRVDNRRRI 226

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BLAST of MS000899 vs. NCBI nr
Match: XP_022961642.1 (RNA-binding protein 48 isoform X1 [Cucurbita moschata])

HSP 1 Score: 404.4 bits (1038), Expect = 6.2e-109
Identity = 200/226 (88.50%), Postives = 213/226 (94.25%), Query Frame = 0


Query: 1   MPRYTNEPPAVRVYAICDESRYLIVRNVPALGCGDDLLKLFSSYGNVEECKPMDAEECDE 60
           MPRYTNEPPAVRVY ICDESRYLIVRNVPALGCGD+LLKLFSSYGN+EECKPMDAEECDE
Sbjct: 1   MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDE 60

Query: 61  FTDVYFIKFHLVNNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLAR 120
           FTDVYF+KFHLV+NARFAKRKLDEFVFLGNRLQVSYAP+FESLLDTKEKLEVRRREVLAR
Sbjct: 61  FTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLAR 120

Query: 121 LNLGRSKGSSVRSTATDLSNPSHSHYALEQKYSLEKRNYGDAALISNPRVSQMTKVSSDQ 180
           LN GR +GS+V S  T  +NPSHSHY LEQK SLEKRNYGDAAL SNP VSQ+T+VSSDQ
Sbjct: 121 LNSGRPRGSAVNSATTKFTNPSHSHYTLEQKSSLEKRNYGDAALSSNPHVSQITRVSSDQ 180

Query: 181 DYFASESMNQTVHLVREKLDQIQSSSEHLQAGPVSKKSRVDNRRRI 227
           DYFASESMNQTVHLVREKLD+IQS SEHL+AGPVSK+SRVDNRRRI
Sbjct: 181 DYFASESMNQTVHLVREKLDKIQSCSEHLEAGPVSKRSRVDNRRRI 226

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BLAST of MS000899 vs. NCBI nr
Match: XP_022997621.1 (RNA-binding protein 48 isoform X1 [Cucurbita maxima])

HSP 1 Score: 402.5 bits (1033), Expect = 2.4e-108
Identity = 199/226 (88.05%), Postives = 213/226 (94.25%), Query Frame = 0


Query: 1   MPRYTNEPPAVRVYAICDESRYLIVRNVPALGCGDDLLKLFSSYGNVEECKPMDAEECDE 60
           MPRYTNEPPAVRVY ICDESRYLIVRNVPALGCGD+LLKLFSSYGN+EECKPMDAEECDE
Sbjct: 1   MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDE 60

Query: 61  FTDVYFIKFHLVNNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLAR 120
           FTDVYF+KFHLV+NARFAKRKLDEFVFLGNRLQVSYAP+FESLLDTKEKLEVRRREVLAR
Sbjct: 61  FTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLAR 120

Query: 121 LNLGRSKGSSVRSTATDLSNPSHSHYALEQKYSLEKRNYGDAALISNPRVSQMTKVSSDQ 180
           L+ GR +GS+V S  T  +NPSHSHY LEQK SLEKRNYGDAAL SNP VSQ+T+VSSDQ
Sbjct: 121 LDSGRPRGSAVNSATTKFTNPSHSHYTLEQKNSLEKRNYGDAALSSNPHVSQITRVSSDQ 180

Query: 181 DYFASESMNQTVHLVREKLDQIQSSSEHLQAGPVSKKSRVDNRRRI 227
           DYFASESMNQTVHLVREKLD+IQS SEHL+AGPVSK+SRVDNRRRI
Sbjct: 181 DYFASESMNQTVHLVREKLDKIQSCSEHLEAGPVSKRSRVDNRRRI 226

[Close]

BLAST of MS000899 vs. NCBI nr
Match: KAG6598220.1 (RNA-binding protein 48, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 399.1 bits (1024), Expect = 2.6e-107
Identity = 198/226 (87.61%), Postives = 212/226 (93.81%), Query Frame = 0


Query: 1   MPRYTNEPPAVRVYAICDESRYLIVRNVPALGCGDDLLKLFSSYGNVEECKPMDAEECDE 60
           MPRYTNEPPAVRVY ICDESRYLIVRNVPALGCGD+LLKLFSSYGN+EECKPMDAEECDE
Sbjct: 1   MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDE 60

Query: 61  FTDVYFIKFHLVNNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLAR 120
           FTDVYF+KFHLV+NARFAKRKLDEFVFLGNRLQVSYAP+FESLLDTKEKLEVRRREVLAR
Sbjct: 61  FTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLAR 120

Query: 121 LNLGRSKGSSVRSTATDLSNPSHSHYALEQKYSLEKRNYGDAALISNPRVSQMTKVSSDQ 180
           L+ GR +GS+V S  T  +NPSHSHY LEQK SLEKRNYGDAAL SNP VSQ+T+VSSDQ
Sbjct: 121 LDSGRPRGSAVNSATTKFTNPSHSHYTLEQKNSLEKRNYGDAALSSNPHVSQITRVSSDQ 180

Query: 181 DYFASESMNQTVHLVREKLDQIQSSSEHLQAGPVSKKSRVDNRRRI 227
           DYFASESMNQTVHLVREKLD+IQS SE L+AGPVSK+SRVDNRRRI
Sbjct: 181 DYFASESMNQTVHLVREKLDKIQSCSEDLEAGPVSKRSRVDNRRRI 226

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BLAST of MS000899 vs. ExPASy Swiss-Prot
Match: A4FVJ7 (RNA-binding protein 48 OS=Danio rerio OX=7955 GN=rbm48 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 8.4e-24
Identity = 65/170 (38.24%), Postives = 99/170 (58.24%), Query Frame = 0


Query: 10  AVRVYAICDESRYLIVRNVPALGCGDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFIKF 69
           AV+VY I  ESRYL+V+ VPA+G   +L++LF+ YG +EE +P+D    ++FT+VY I+F
Sbjct: 40  AVKVYTINLESRYLLVQGVPAIGVMAELVQLFALYGVIEEYRPLDEYPAEQFTEVYLIQF 99

Query: 70  HLVNNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLNLGRSKGS 129
             + +AR AKR  DE  F G +L V YAPE+E++ +TK+KL+ RRR V    N      +
Sbjct: 100 QKLTSARAAKRHTDEKSFFGGQLHVCYAPEYETVEETKQKLQDRRRYV----NWASQNAA 159

Query: 130 SVRSTATDLSNPSHSHYALEQKYSLEKRNYGDAALISNPRVSQMTKVSSD 180
            + S   +++  S S        S + R      +  NP  ++   V+SD
Sbjct: 160 KLHSQQAEVNTESSS--------STDTRTAEAPIMQKNPEEARRENVNSD 197

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BLAST of MS000899 vs. ExPASy Swiss-Prot
Match: Q5R4U2 (RNA-binding protein 48 OS=Pongo abelii OX=9601 GN=RBM48 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.1e-22
Identity = 52/116 (44.83%), Postives = 79/116 (68.10%), Query Frame = 0


Query: 3   RYTNEPPAVRVYAICDESRYLIVRNVPALGCGDDLLKLFSSYGNVEECKPMDAEECDEFT 62
           R    P AV+VY I  ES+YL+++ VPA+G   +L++ F+ YG +E+   +D    ++FT
Sbjct: 28  REGRRPRAVKVYTINLESQYLLIQGVPAVGVMKELVERFALYGTIEQYNALDEYPAEDFT 87

Query: 63  DVYFIKFHLVNNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVL 119
           +VY IKF  + +AR AKRK+DE  F G  L V YAPEFE++ +T++KL+VR+  V+
Sbjct: 88  EVYLIKFMNLQSARAAKRKMDEQSFFGGLLHVCYAPEFETVEETRKKLQVRKAYVV 143

[Close]

BLAST of MS000899 vs. ExPASy Swiss-Prot
Match: Q5RL73 (RNA-binding protein 48 OS=Homo sapiens OX=9606 GN=RBM48 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 7.9e-22
Identity = 51/116 (43.97%), Postives = 79/116 (68.10%), Query Frame = 0


Query: 3   RYTNEPPAVRVYAICDESRYLIVRNVPALGCGDDLLKLFSSYGNVEECKPMDAEECDEFT 62
           R    P AV+VY I  ES+YL+++ VPA+G   +L++ F+ YG +E+   +D    ++FT
Sbjct: 28  REGRRPRAVKVYTINLESQYLLIQGVPAVGVMKELVERFALYGAIEQYNALDEYPAEDFT 87

Query: 63  DVYFIKFHLVNNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVL 119
           +VY IKF  + +AR AKRK+DE  F G  L V YAPEFE++ +T++KL++R+  V+
Sbjct: 88  EVYLIKFMNLQSARTAKRKMDEQSFFGGLLHVCYAPEFETVEETRKKLQMRKAYVV 143

[Close]

BLAST of MS000899 vs. ExPASy Swiss-Prot
Match: Q561R3 (RNA-binding protein 48 OS=Rattus norvegicus OX=10116 GN=Rbm48 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.0e-21
Identity = 50/112 (44.64%), Postives = 76/112 (67.86%), Query Frame = 0


Query: 3   RYTNEPPAVRVYAICDESRYLIVRNVPALGCGDDLLKLFSSYGNVEECKPMDAEECDEFT 62
           R    P AV+VY I  ES+YL+++ VPA+G   +L++ F+ YG +E+   +D    ++FT
Sbjct: 28  REGRRPRAVKVYTINLESQYLLIQGVPAVGAMKELVERFALYGAIEQYNALDEYPAEDFT 87

Query: 63  DVYFIKFHLVNNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRR 115
           +VY IKF  + +AR AK+K+DE  F G  L V YAPEFE++ +T++KLE R+
Sbjct: 88  EVYLIKFVKLQSARIAKKKMDEQSFFGGLLHVCYAPEFETVEETRKKLEERK 139

[Close]

BLAST of MS000899 vs. ExPASy Swiss-Prot
Match: Q8K2X2 (RNA-binding protein 48 OS=Mus musculus OX=10090 GN=Rbm48 PE=2 SV=2)

HSP 1 Score: 103.6 bits (257), Expect = 3.0e-21
Identity = 49/112 (43.75%), Postives = 76/112 (67.86%), Query Frame = 0


Query: 3   RYTNEPPAVRVYAICDESRYLIVRNVPALGCGDDLLKLFSSYGNVEECKPMDAEECDEFT 62
           R    P AV+VY I  ES+YL+++ VPA+G   +L++ F+ YG +E+   +D    ++FT
Sbjct: 28  REGRRPRAVKVYTINLESQYLLIQGVPAVGAMKELVERFALYGAIEQYNALDEYPAEDFT 87

Query: 63  DVYFIKFHLVNNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRR 115
           +VY IKF  + +AR AK+K+DE  F G  L V YAPEFE++ +T++KL+ R+
Sbjct: 88  EVYLIKFVKLQSARVAKKKMDEQSFFGGLLHVCYAPEFETVEETRKKLQERK 139

[Close]

BLAST of MS000899 vs. ExPASy TrEMBL
Match: A0A6J1BRX6 (RNA-binding protein 48 OS=Momordica charantia OX=3673 GN=LOC111005197 PE=3 SV=1)

HSP 1 Score: 447.2 bits (1149), Expect = 4.1e-122
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MPRYTNEPPAVRVYAICDESRYLIVRNVPALGCGDDLLKLFSSYGNVEECKPMDAEECDE 60
           MPRYTNEPPAVRVYAICDESRYLIVRNVPALGCGDDLLKLFSSYGNVEECKPMDAEECDE
Sbjct: 1   MPRYTNEPPAVRVYAICDESRYLIVRNVPALGCGDDLLKLFSSYGNVEECKPMDAEECDE 60

Query: 61  FTDVYFIKFHLVNNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLAR 120
           FTDVYFIKFHLVNNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLAR
Sbjct: 61  FTDVYFIKFHLVNNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLAR 120

Query: 121 LNLGRSKGSSVRSTATDLSNPSHSHYALEQKYSLEKRNYGDAALISNPRVSQMTKVSSDQ 180
           LNLGRSKGSSVRSTATDLSNPSHSHYALEQKYSLEKRNYGDAALISNPRVSQMTKVSSDQ
Sbjct: 121 LNLGRSKGSSVRSTATDLSNPSHSHYALEQKYSLEKRNYGDAALISNPRVSQMTKVSSDQ 180

Query: 181 DYFASESMNQTVHLVREKLDQIQSSSEHLQAGPVSKKSRVDNRRRI 227
           DYFASESMNQTVHLVREKLDQIQSSSEHLQAGPVSKKSRVDNRRRI
Sbjct: 181 DYFASESMNQTVHLVREKLDQIQSSSEHLQAGPVSKKSRVDNRRRI 226

[Close]

BLAST of MS000899 vs. ExPASy TrEMBL
Match: A0A6J1DGJ2 (RNA-binding protein 48 OS=Momordica charantia OX=3673 GN=LOC111020241 PE=3 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 8.0e-110
Identity = 203/226 (89.82%), Postives = 216/226 (95.58%), Query Frame = 0


Query: 1   MPRYTNEPPAVRVYAICDESRYLIVRNVPALGCGDDLLKLFSSYGNVEECKPMDAEECDE 60
           MPRYT+E PAVRVY ICDESR+LIVRNVPALGCGDDLLKLFSSYGNVEECKPMDAEECDE
Sbjct: 1   MPRYTDEHPAVRVYTICDESRFLIVRNVPALGCGDDLLKLFSSYGNVEECKPMDAEECDE 60

Query: 61  FTDVYFIKFHLVNNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLAR 120
           FTDVYF+KFHLV NARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLAR
Sbjct: 61  FTDVYFVKFHLVANARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLAR 120

Query: 121 LNLGRSKGSSVRSTATDLSNPSHSHYALEQKYSLEKRNYGDAALISNPRVSQMTKVSSDQ 180
           L+ GRSKGS+VRST T L+NP+HSHY LEQK SLEKRNYGDAALI+NP VSQMTKVSSDQ
Sbjct: 121 LDSGRSKGSAVRSTTTKLTNPAHSHYTLEQKNSLEKRNYGDAALIANPHVSQMTKVSSDQ 180

Query: 181 DYFASESMNQTVHLVREKLDQIQSSSEHLQAGPVSKKSRVDNRRRI 227
           D+FASESMN+TVHLVREKLD+IQSSSEHL+ GP+SKKSRVDNRRRI
Sbjct: 181 DHFASESMNRTVHLVREKLDKIQSSSEHLEGGPMSKKSRVDNRRRI 226

[Close]

BLAST of MS000899 vs. ExPASy TrEMBL
Match: A0A6J1HAQ6 (RNA-binding protein 48 OS=Cucurbita moschata OX=3662 GN=LOC111462353 PE=3 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 3.0e-109
Identity = 200/226 (88.50%), Postives = 213/226 (94.25%), Query Frame = 0


Query: 1   MPRYTNEPPAVRVYAICDESRYLIVRNVPALGCGDDLLKLFSSYGNVEECKPMDAEECDE 60
           MPRYTNEPPAVRVY ICDESRYLIVRNVPALGCGD+LLKLFSSYGN+EECKPMDAEECDE
Sbjct: 1   MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDE 60

Query: 61  FTDVYFIKFHLVNNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLAR 120
           FTDVYF+KFHLV+NARFAKRKLDEFVFLGNRLQVSYAP+FESLLDTKEKLEVRRREVLAR
Sbjct: 61  FTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLAR 120

Query: 121 LNLGRSKGSSVRSTATDLSNPSHSHYALEQKYSLEKRNYGDAALISNPRVSQMTKVSSDQ 180
           LN GR +GS+V S  T  +NPSHSHY LEQK SLEKRNYGDAAL SNP VSQ+T+VSSDQ
Sbjct: 121 LNSGRPRGSAVNSATTKFTNPSHSHYTLEQKSSLEKRNYGDAALSSNPHVSQITRVSSDQ 180

Query: 181 DYFASESMNQTVHLVREKLDQIQSSSEHLQAGPVSKKSRVDNRRRI 227
           DYFASESMNQTVHLVREKLD+IQS SEHL+AGPVSK+SRVDNRRRI
Sbjct: 181 DYFASESMNQTVHLVREKLDKIQSCSEHLEAGPVSKRSRVDNRRRI 226

[Close]

BLAST of MS000899 vs. ExPASy TrEMBL
Match: A0A6J1K7Z4 (RNA-binding protein 48 OS=Cucurbita maxima OX=3661 GN=LOC111492499 PE=3 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 1.1e-108
Identity = 199/226 (88.05%), Postives = 213/226 (94.25%), Query Frame = 0


Query: 1   MPRYTNEPPAVRVYAICDESRYLIVRNVPALGCGDDLLKLFSSYGNVEECKPMDAEECDE 60
           MPRYTNEPPAVRVY ICDESRYLIVRNVPALGCGD+LLKLFSSYGN+EECKPMDAEECDE
Sbjct: 1   MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDE 60

Query: 61  FTDVYFIKFHLVNNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLAR 120
           FTDVYF+KFHLV+NARFAKRKLDEFVFLGNRLQVSYAP+FESLLDTKEKLEVRRREVLAR
Sbjct: 61  FTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLAR 120

Query: 121 LNLGRSKGSSVRSTATDLSNPSHSHYALEQKYSLEKRNYGDAALISNPRVSQMTKVSSDQ 180
           L+ GR +GS+V S  T  +NPSHSHY LEQK SLEKRNYGDAAL SNP VSQ+T+VSSDQ
Sbjct: 121 LDSGRPRGSAVNSATTKFTNPSHSHYTLEQKNSLEKRNYGDAALSSNPHVSQITRVSSDQ 180

Query: 181 DYFASESMNQTVHLVREKLDQIQSSSEHLQAGPVSKKSRVDNRRRI 227
           DYFASESMNQTVHLVREKLD+IQS SEHL+AGPVSK+SRVDNRRRI
Sbjct: 181 DYFASESMNQTVHLVREKLDKIQSCSEHLEAGPVSKRSRVDNRRRI 226

[Close]

BLAST of MS000899 vs. ExPASy TrEMBL
Match: A0A5A7V5K4 (RNA-binding protein 48 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G002210 PE=3 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 2.7e-102
Identity = 191/226 (84.51%), Postives = 206/226 (91.15%), Query Frame = 0


Query: 1   MPRYTNEPPAVRVYAICDESRYLIVRNVPALGCGDDLLKLFSSYGNVEECKPMDAEECDE 60
           MPR+ +EP AVR Y +CDESRYLIVRNVPALGCGD L KLFSSYGN+EECKPMDAEECDE
Sbjct: 1   MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDE 60

Query: 61  FTDVYFIKFHLVNNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLAR 120
           FTDVYF+KFH V NARFAKRKLDEFVFLGNRLQVSYAPEFESL+DTKEKLEVRRREVLAR
Sbjct: 61  FTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRRREVLAR 120

Query: 121 LNLGRSKGSSVRSTATDLSNPSHSHYALEQKYSLEKRNYGDAALISNPRVSQMTKVSSDQ 180
           L+ GR +GS+V ST   L+NPS S+Y LEQK SLE RNYGDAALIS+P VSQMT+VSSDQ
Sbjct: 121 LDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQ 180

Query: 181 DYFASESMNQTVHLVREKLDQIQSSSEHLQAGPVSKKSRVDNRRRI 227
           DYFASESMNQTVHLVREKLD+IQSSSEHLQAGP SKKSR+DNRRRI
Sbjct: 181 DYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRLDNRRRI 226

[Close]

BLAST of MS000899 vs. TAIR 10
Match: AT2G27790.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 243.4 bits (620), Expect = 1.7e-64
Identity = 137/255 (53.73%), Postives = 168/255 (65.88%), Query Frame = 0


Query: 1   MPRYTNEPPAVRVYAICDESRYLIVRNVPALGCGDDLLKLFSSYGNVEECKPMDAEECDE 60
           M RY +E PAVRVY +CDESRY+IVRNVPALGCGDDL++LF +YG VEECKPMDAE+C E
Sbjct: 1   MGRYKDETPAVRVYTVCDESRYMIVRNVPALGCGDDLMRLFMTYGEVEECKPMDAEDCAE 60

Query: 61  FTDVYFIKFHLVNNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLAR 120
           FTDVY+IKF L+ NARFAKRKLDE  FLGNRLQ+SYAPE+E++ DTK+KLE RR+EVLAR
Sbjct: 61  FTDVYWIKFRLITNARFAKRKLDESSFLGNRLQISYAPEYENVNDTKDKLESRRKEVLAR 120

Query: 121 LNLGRSKGSSVRSTATDLSNP------SHSHYALEQKYSLEKRNYGDAALISNPRVSQMT 180
           LN  + K +   S  T L+ P      + S    E +Y   + N            + +T
Sbjct: 121 LNPQKEKST---SQVTKLAGPALTQTDNVSSQRREMEYQFHRGN------------APVT 180

Query: 181 KVSSDQDYFASESMNQTVHLVREKLDQIQSSSEHLQAGPVS------------------- 227
           +VSSDQ+YFAS SMNQTV  VREKL++I+ S    +  P S                   
Sbjct: 181 RVSSDQEYFASSSMNQTVKTVREKLNKIEESGNQKRLQPSSQTQPEESGNQKRLQPSSQI 240

[Close]

BLAST of MS000899 vs. TAIR 10
Match: AT2G27790.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 243.4 bits (620), Expect = 1.7e-64
Identity = 137/255 (53.73%), Postives = 168/255 (65.88%), Query Frame = 0


Query: 1   MPRYTNEPPAVRVYAICDESRYLIVRNVPALGCGDDLLKLFSSYGNVEECKPMDAEECDE 60
           M RY +E PAVRVY +CDESRY+IVRNVPALGCGDDL++LF +YG VEECKPMDAE+C E
Sbjct: 1   MGRYKDETPAVRVYTVCDESRYMIVRNVPALGCGDDLMRLFMTYGEVEECKPMDAEDCAE 60

Query: 61  FTDVYFIKFHLVNNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLAR 120
           FTDVY+IKF L+ NARFAKRKLDE  FLGNRLQ+SYAPE+E++ DTK+KLE RR+EVLAR
Sbjct: 61  FTDVYWIKFRLITNARFAKRKLDESSFLGNRLQISYAPEYENVNDTKDKLESRRKEVLAR 120

Query: 121 LNLGRSKGSSVRSTATDLSNP------SHSHYALEQKYSLEKRNYGDAALISNPRVSQMT 180
           LN  + K +   S  T L+ P      + S    E +Y   + N            + +T
Sbjct: 121 LNPQKEKST---SQVTKLAGPALTQTDNVSSQRREMEYQFHRGN------------APVT 180

Query: 181 KVSSDQDYFASESMNQTVHLVREKLDQIQSSSEHLQAGPVS------------------- 227
           +VSSDQ+YFAS SMNQTV  VREKL++I+ S    +  P S                   
Sbjct: 181 RVSSDQEYFASSSMNQTVKTVREKLNKIEESGNQKRLQPSSQTQPEESGNQKRLQPSSQI 240

[Close]

BLAST of MS000899 vs. TAIR 10
Match: AT5G27300.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 214.9 bits (546), Expect = 6.5e-56
Identity = 123/224 (54.91%), Postives = 152/224 (67.86%), Query Frame = 0


Query: 15  AICDESRYLIVRNVPALGCGDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFIKFHLVNN 74
           ++CDESRY+IVRNVPALGCGDDL++LF +YG VEECKPMDAE+C EFTDVY+IKF L+ N
Sbjct: 371 SVCDESRYMIVRNVPALGCGDDLMRLFMTYGEVEECKPMDAEDCAEFTDVYWIKFRLITN 430

Query: 75  ARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLNLGRSKGSSVRST 134
           A    RKLDE  FLGNRLQ+SYAPE+ES+ DTKEKLE RR+EVLARLN  ++K +   S 
Sbjct: 431 A----RKLDESSFLGNRLQISYAPEYESVSDTKEKLETRRKEVLARLNPHKAKST---SQ 490

Query: 135 ATDLSNP------SHSHYALEQKYSLEKRNYGDAALISNPRVSQMTKVSSDQDYFASESM 194
            T L+ P      + S    E  Y   + N            + +T+VSS Q+YFAS SM
Sbjct: 491 VTKLAGPALTQTDNFSPRRREMDYQFHRGN------------APVTRVSSYQEYFASSSM 550

Query: 195 NQTVHLVREKLDQIQSSSEHLQAGPVS------KKSRVDNRRRI 227
           NQ V  VREKL++I+ S    +  P S      K++RVDNRRRI
Sbjct: 551 NQMVKTVREKLNKIEESGNQKRLQPSSQTQPDFKRTRVDNRRRI 575

[Close]

BLAST of MS000899 vs. TAIR 10
Match: AT5G27300.2 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 214.9 bits (546), Expect = 6.5e-56
Identity = 123/224 (54.91%), Postives = 152/224 (67.86%), Query Frame = 0


Query: 15  AICDESRYLIVRNVPALGCGDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFIKFHLVNN 74
           ++CDESRY+IVRNVPALGCGDDL++LF +YG VEECKPMDAE+C EFTDVY+IKF L+ N
Sbjct: 346 SVCDESRYMIVRNVPALGCGDDLMRLFMTYGEVEECKPMDAEDCAEFTDVYWIKFRLITN 405

Query: 75  ARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLNLGRSKGSSVRST 134
           A    RKLDE  FLGNRLQ+SYAPE+ES+ DTKEKLE RR+EVLARLN  ++K +   S 
Sbjct: 406 A----RKLDESSFLGNRLQISYAPEYESVSDTKEKLETRRKEVLARLNPHKAKST---SQ 465

Query: 135 ATDLSNP------SHSHYALEQKYSLEKRNYGDAALISNPRVSQMTKVSSDQDYFASESM 194
            T L+ P      + S    E  Y   + N            + +T+VSS Q+YFAS SM
Sbjct: 466 VTKLAGPALTQTDNFSPRRREMDYQFHRGN------------APVTRVSSYQEYFASSSM 525

Query: 195 NQTVHLVREKLDQIQSSSEHLQAGPVS------KKSRVDNRRRI 227
           NQ V  VREKL++I+ S    +  P S      K++RVDNRRRI
Sbjct: 526 NQMVKTVREKLNKIEESGNQKRLQPSSQTQPDFKRTRVDNRRRI 550

The following BLAST results are available for this feature:

BLAST of MS000899 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132316.1	8.4e-122	100.00	RNA-binding protein 48-like [Momordica charantia]	[more]
XP_022152542.1	1.6e-109	89.82	RNA-binding protein 48-like [Momordica charantia]	[more]
XP_022961642.1	6.2e-109	88.50	RNA-binding protein 48 isoform X1 [Cucurbita moschata]	[more]
XP_022997621.1	2.4e-108	88.05	RNA-binding protein 48 isoform X1 [Cucurbita maxima]	[more]
KAG6598220.1	2.6e-107	87.61	RNA-binding protein 48, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of MS000899 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4FVJ7	8.4e-24	38.24	RNA-binding protein 48 OS=Danio rerio OX=7955 GN=rbm48 PE=2 SV=1	[more]
Q5R4U2	2.1e-22	44.83	RNA-binding protein 48 OS=Pongo abelii OX=9601 GN=RBM48 PE=2 SV=1	[more]
Q5RL73	7.9e-22	43.97	RNA-binding protein 48 OS=Homo sapiens OX=9606 GN=RBM48 PE=1 SV=1	[more]
Q561R3	1.0e-21	44.64	RNA-binding protein 48 OS=Rattus norvegicus OX=10116 GN=Rbm48 PE=2 SV=1	[more]
Q8K2X2	3.0e-21	43.75	RNA-binding protein 48 OS=Mus musculus OX=10090 GN=Rbm48 PE=2 SV=2	[more]

BLAST of MS000899 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BRX6	4.1e-122	100.00	RNA-binding protein 48 OS=Momordica charantia OX=3673 GN=LOC111005197 PE=3 SV=1	[more]
A0A6J1DGJ2	8.0e-110	89.82	RNA-binding protein 48 OS=Momordica charantia OX=3673 GN=LOC111020241 PE=3 SV=1	[more]
A0A6J1HAQ6	3.0e-109	88.50	RNA-binding protein 48 OS=Cucurbita moschata OX=3662 GN=LOC111462353 PE=3 SV=1	[more]
A0A6J1K7Z4	1.1e-108	88.05	RNA-binding protein 48 OS=Cucurbita maxima OX=3661 GN=LOC111492499 PE=3 SV=1	[more]
A0A5A7V5K4	2.7e-102	84.51	RNA-binding protein 48 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold5...	[more]

BLAST of MS000899 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27790.1	1.7e-64	53.73	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G27790.2	1.7e-64	53.73	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G27300.1	6.5e-56	54.91	pentatricopeptide (PPR) repeat-containing protein	[more]
AT5G27300.2	6.5e-56	54.91	pentatricopeptide (PPR) repeat-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 17..114 e-value: 1.6E-9 score: 39.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 23..92 e-value: 4.6E-6 score: 26.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 21..99 score: 9.950859
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 203..226
IPR039599	RNA-binding protein 48	PANTHER	PTHR20957	UNCHARACTERIZED	coord: 3..226
IPR034264	RBM48, RNA recognition motif	CDD	cd12442	RRM_RBM48	coord: 11..110 e-value: 4.63066E-56 score: 172.092
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 7..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000899.1	MS000899.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding