MS000894 (gene) Bitter gourd (TR) v1

Overview


Name	MS000894
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	type 2 DNA topoisomerase 6 subunit B-like isoform X1
Location	scaffold36: 107530 .. 112728 (+)
RNA-Seq Expression	MS000894
Synteny	MS000894

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAAACTTCTTCCTCTCAACTGTCTATTGCAGCTAATTTCTTCAGCAATACGGAGATGCATCTGCTCCGAACGACTTTGCAGACTCTCAGTTCTTCTGCAACGCTCTGCCGCTTCCGATCCTCCCCTAGTCTGTATTTCTAGTGAGTGATCTCTCGCTCTCTTTCTCGGCGGTGGTTGTCCAAGTACTCGTAATCTCATTCTAGTTCTATTCAATTTTGGTTTATCAAGAATTTCGACGACTTTGTTCTCAGTCGGTTCATGAACTACTTTCGATGAATTTAATTTTCTGGTCCTCCACTAGTTTGCATTTCAAGTGAGGGATGTCTCGCGCTCTTTCTCGTCGGTGATTGTCGAGATACTCGTTATCTCATTTTAGTTCTATTCAATTTTGGTTTATCAAACATTTTGACGACTTTAGGTCTTAGTCAGTTCATTAACTACTTTCGATTCAAAGAATTTTATTGAGGCATTGAAACTTCAAAAGTTACAAAGAAACCTTCTAATGAGAGTAAATCCTGGAATTTTTCGATCTAGTTTCAGATACCGGCCTTGGAAGCTGCCTAGAGGAGTTTCAGGATTTTAAGTGTCCCGTTGAAGGTATCCTTGCTGAACAGTGGGGTGAGTTGCTGACTCTGCTCCACTAGCTCTCTGGCAGTACTTGATAAACAGTAAAATGCTTTAATTAATTCCTCTACGTTATTTGATTATCGTTTGTATACTATTTTGTTGATTTTTTCGTCTGCATCACGTTCATTGCAGTAGCTCATGTACAGAGGTAGCTACCTTATTCTTTTCCTGAGCATATGCTCATATGGTTAGCTGCCTTCTCACTATAAGGCAACGCGTGCATACATCGTTGTACAAACGATTCCTTATATTTCCTTCTCAGTCAAATAAGCTAACCTGAGACTTTCCACAAACAGCAAGTCTGCAATCATCCTCCCTAAAAGCTGCATTCAGCAAACCAAATTTCATTACATTTTTATTTGTTGGCTGTAGTTATCTCGGTTATATCATCTTCACGTTGAAATGCCATTTAGATATTTTGCAGTAGGATTAGACTACCGTACCATTGTTATGAGGTTGAGTATTAATACATTTCTGGTATTTTATGCAGATGGAATTGTTTCTTTGAGAACTACTAGTAAGTTCCATTTTCTCAAAATTAAACTATTTTTAATTAATATCCTGGGGAATAATGTAATTAAGATCTTCATCGACACCTCCTAGGAAGAGTCAACAGCTACACCATAGAATGTGAGGTCCCTTCCTCTTTGTGGCCCAAGATCAAAGTGATTTAAGCCTTTCTGGATTTCATGGAATACTGAGTTTCTAGATCACTTGCTAAGTGTGCATAGTAGTATAGGCGTAGAATAAGATTAGTGCGTTACAAATAATAAATAAAAAGAAGTTAGAATGCCGTAGAAGAATTTTTCACGGAATACTGAGTGTCTAGATCATTTTGAGTTGTTTTCCGCTCTCAAGTTGTACTTTGTTGTTTTAAATCTAGTACCATTTTTTAGTGCATATACTAACGTCCTTTGGAATTTTCAGATTTTTGTGATAATGAGATAAGTTGCTATCAGTTGAATCTGAAAGAAAATGTCACTATCAGGGAGCCAATTTGGCTACCTTCAAACGTTAAGCATGGTGTGAAATTCAGGCATGGAATCACTGGTACTTTTTGGTCACTTCTCATTAATTTTTTTTTATTGGAGGTAATTGGATTTTTTTTTTTTAGTGGAACCGAAGTGCGTTTGTCTGTTTCTGAAGCTGTTGATGTTTTGCTAGCGGAGATCAATTGCTTCTTTCAGAAGGTCCCTTCCCCCTTTATTTATCGCTGAACTCAATCTAGTCTTAACTTTTGGCTTAGTGAAACATTTTACTGGATCTTATCTAATCTGTTTTACTGTATTTCAATTATTATACAGCTTAAAATAATGTTCATTAGTTGTGCGTTATTAACCACAAAAGTAACACGATAGTTGGTTCAAAATATTTCAATCATGAAGACTAATGCTTTTGTCATGCTTTCTCTTCTTTGTTCCCTTTGCTACAATACTAAGGTTTTGGTTGCTGTCTGCACAAAATGAATAAGGCAATATGCACGATATGCACAATGCTTCCATATAGCCTCTTATAGATAACAAAATGAATTAATCCTGAGATGAAATATCAAGTTCCAGAGTCTTGGGTAATTCTAGACTGCTGCTCTTGTCTTCCACTCAGTCCTATCATGGACTGTTACTGTCTATAAAACACGGACACGGCAAAAAAGGAGAAGTATCTGTGTCGGACACGTGTCGGATACGGATACGTCCGGACACGCTCTTAATATTTTACAGTAACCTTCTAACTCAAACGAATTTGAAGGCTGGCCTTGACGAAATAGAAAGTGAAAGTGAAGCATTGATTCAAAAGATAGTTTTTAGATTTAGATAATGGAAGTTTATTAAGGTTTTAGGATACTCTATTGTATTCTCGGTACAAGCAACGTAGTCTCCTCTAGGTAATAAAATATTAAGAGCCAGTAGTAAGAAGTTCAGTTTTGTAATTATCCTAATTGAGATGAACCTGATTAACCATTAATGTTGATCTTTTTGAAAGTCCAGGGTAGAGCAAACTGCTTACTCTCTGTAACTTTAGACTTGTAACTTTATTTATTGACTCTCAAGTTTTATTATTTCTTATCCTAGTGATATCGAACAGCCTTTAGTATCAAATCAACCATGTAGTTTATATTTCTCAAGGTGATTGTTTCCTGAATCATCGTTACATATCTGACCCAAGTTTATCCCGCTTTATTTTGCAGATTCGCATTCTAAAGATCCCTGTAAGTGGAACTTGTTACTCTATTCCACGCTTCAAATATTATATGCTAACAAAAATTTTCAATGAAACTCCGCAAAAGAACTGCATTTTATGGAACTGGTTTTGTCAACATAATATCTCTTATGTAATTATATATTTAGTCATGCATGGCTTGGCAAGAATTTTCATATTAGAAACCTAAATTTTGGAGAAGAATCTACACGAACAGATATATATTGCAAATTGCCTTACTATGGTGATGCATTTGGCACTAAAGGAACTCATGAGCTTTTCAATTTCATAAGAATGTTGCTATGGAGGTTGTGGTCGAGTGCCAGGATATCCCAGGGTCACGAAATGATGCAGTCTTCCTGGAAAACTTGTCCTCTAGTTCCTCTTTCACAGCCTCAACCCTGGATCATCTGAAATTGGGCCTTGAGGATTATGTATCAAGGCATGGATCTAGTTTGACGTGTGACTCTTGCTTCCCTAACAGGTGTGTTTGTCACCTTAATTCATGCAAACTCAGTTTTTAGACTCAACTTCCTTTGTTTTTAGGTTATTGTAAAAAGAAGAAATAATTTCCTGATGAGATATAAAGCAAGTTTGTTCCACATTTTTCCTGGATTAAGTGAAGCTTTCCCAATTTCGCACTCAGATTTTAATAATTAATTGCTGAACTTGCCTTTGATGCGCATTATATATATACTTCTTTAATTTCGAACTTTAGGGATAATCTGAAGAGTGGGGGTGGAATGATTTGTGAAGAAAAGCGTAAAACGACCACACTGGCAGTGGAGGCAGCGATTGTGATAAGTGAATTATCAAATCCGACCACTAATTGCTTGGGAGCACGGTTCTCCGATACAGAGGTTGTTTGACATATTAAGTATTATCATTCGGTTCCTTCCTGTTCTTTCCGTTCCAGAAAGTAGCAAGCAAGTTTTCCAAATACGAACTATATTCCGAAGCATTCAGACCACATCTCTGTACTACAATCAAAGAGTGCTATCTGTTTCAGGAACTTATTTTTATTAGTCTTCCTTTTCTCTTGGTGATCGCAACTTTGCCTTAGCTTTTACTATGTCACATGATTCCGCAGGTTTTTTGTTTTAAAGATTTTGCACCTTGCTCGATCTCTGAGGCATTTCTAAAGGCATTAAGAGGCATTGACTGGAAACGTTATGGTTTGTCTTTGGAAAGTGCTACCAATCAAAGAAGCCATGCATTACTAAAGTGGGAACACGTGCCCCTATCTTTTCATATTCATATTGTTGTCCACTGCTACCAGAAGGTATATTATTCATTAGATCTTATGTTTAAAGGTTAACAATGATTATTGTGATCTTTATTTTCTATGGTATGTAAAGTTAGTTTTCTGCCTTAGCTTGTGGCCGAGGTCATGCCATTGGTGCAGAAGACTCAGTTTGATAAAAAACTCATAAGTAAAGCAGTTAAGCTTGCACTGGACGATTTGAAGAATAAATATGCGGGCTTTCTTCTCAGTGCCAATACCCTGAAGGTAAACATATGTTTCACAGTCTCGGGTGCACAGACTAAATTGATCATTAAGTTCTAAGTTTCAAAATGGAAGTCCTTTTTTGTGGCAAACAATAAAAAAATTCTTCCATCACGCATTTTTTATTATCCCACACAGTCACGAAGCCAAACACAGTTTAGTGAAGAATTCTGCTAAGCTTTCAGGTTTGGTAACCAAGTTTTGACTATAGTGAATTCTTTTGGAAATGCTAGCAATACAATGTAGTTTCTTTTGTATGTGTAATTGTTTGCAGCAATTAAATATAACTTTTTCTAAAATCGTATCTTGGTATTTTTTGTTTTTGCTTGTTTCTTCTGGTTTTTAAAAACAAAAAGAACATATTTGGTATTTGCCATTGAAGTTGGATCAAATTAATCACACTCATGTCATCGTATCTCACAAAAAGAGAAAAAGGATTAGAGCTTGCTTTCTTATAATTTAGGTTTCCATGTTCAGGGTATTTACATATTATTCATGAAACTGTTTAGGCTTCTCGTAGGAATCAAGTGAAGTTGACAGCTTCCTGAACTTGCCTGTATTATTCATCTTCAGATCAGTAGGTTTGCCCCTGATCTTGCCAAAACGATTGCTGGCCTAGTTTTATACTCCAATGACTTGGATTTCCAAGAAGAATGCCTTGCAATTCTTGGCTTGCAACCTCAACAATCAGAAGGGGAAATTGTTGAAGAAAATATTAAGGAAAGGATAATTTCAGTCATTGAGGTGAATGACGGAAGGCCAAAAGGAACAAAAGAAGTTGCCCCTCTCTTGTTTGGAGATGGTCGCCACCAACTACAGTTTGTGGACGATGAATGTGATGAAGATGGATTTGATCCAATGGAGTTG

mRNA sequence

AAGAAACTTCTTCCTCTCAACTGTCTATTGCAGCTAATTTCTTCAGCAATACGGAGATGCATCTGCTCCGAACGACTTTGCAGACTCTCAGTTCTTCTGCAACGCTCTGCCGCTTCCGATCCTCCCCTAGTCTGTATTTCTATTTCAGATACCGGCCTTGGAAGCTGCCTAGAGGAGTTTCAGGATTTTAAGTGTCCCGTTGAAGGTATCCTTGCTGAACAGTGGGATTTTTGTGATAATGAGATAAGTTGCTATCAGTTGAATCTGAAAGAAAATGTCACTATCAGGGAGCCAATTTGGCTACCTTCAAACGTTAAGCATGGTGTGAAATTCAGGCATGGAATCACTGGTACTTTTTGGTCACTTCTCATTAATTTTTTTTTATTGGAGGTAATTGGATTTTTTTTTTTTAGTGGAACCGAAGTGCGTTTGTCTGTTTCTGAAGCTGTTGATGTTTTGCTAGCGGAGATCAATTGCTTCTTTCAGAAGAATGTTGCTATGGAGGTTGTGGTCGAGTGCCAGGATATCCCAGGGTCACGAAATGATGCAGTCTTCCTGGAAAACTTGTCCTCTAGTTCCTCTTTCACAGCCTCAACCCTGGATCATCTGAAATTGGGCCTTGAGGATTATGTATCAAGGCATGGATCTAGTTTGACGTGTGACTCTTGCTTCCCTAACAGGGATAATCTGAAGAGTGGGGGTGGAATGATTTGTGAAGAAAAGCGTAAAACGACCACACTGGCAGTGGAGGCAGCGATTGTGATAAGTGAATTATCAAATCCGACCACTAATTGCTTGGGAGCACGGTTCTCCGATACAGAGGTTGTTTTTTGTTTTAAAGATTTTGCACCTTGCTCGATCTCTGAGGCATTTCTAAAGGCATTAAGAGGCATTGACTGGAAACGTTATGGTTTGTCTTTGGAAAGTGCTACCAATCAAAGAAGCCATGCATTACTAAAGTGGGAACACGTGCCCCTATCTTTTCATATTCATATTGTTGTCCACTGCTACCAGAAGCTTGTGGCCGAGGTCATGCCATTGGTGCAGAAGACTCAGTTTGATAAAAAACTCATAAGTAAAGCAGTTAAGCTTGCACTGGACGATTTGAAGAATAAATATGCGGGCTTTCTTCTCAGTGCCAATACCCTGAAGATCAGTAGGTTTGCCCCTGATCTTGCCAAAACGATTGCTGGCCTAGTTTTATACTCCAATGACTTGGATTTCCAAGAAGAATGCCTTGCAATTCTTGGCTTGCAACCTCAACAATCAGAAGGGGAAATTGTTGAAGAAAATATTAAGGAAAGGATAATTTCAGTCATTGAGGTGAATGACGGAAGGCCAAAAGGAACAAAAGAAGTTGCCCCTCTCTTGTTTGGAGATGGTCGCCACCAACTACAGTTTGTGGACGATGAATGTGATGAAGATGGATTTGATCCAATGGAGTTG

Coding sequence (CDS)

AAGAAACTTCTTCCTCTCAACTGTCTATTGCAGCTAATTTCTTCAGCAATACGGAGATGCATCTGCTCCGAACGACTTTGCAGACTCTCAGTTCTTCTGCAACGCTCTGCCGCTTCCGATCCTCCCCTAGTCTGTATTTCTATTTCAGATACCGGCCTTGGAAGCTGCCTAGAGGAGTTTCAGGATTTTAAGTGTCCCGTTGAAGGTATCCTTGCTGAACAGTGGGATTTTTGTGATAATGAGATAAGTTGCTATCAGTTGAATCTGAAAGAAAATGTCACTATCAGGGAGCCAATTTGGCTACCTTCAAACGTTAAGCATGGTGTGAAATTCAGGCATGGAATCACTGGTACTTTTTGGTCACTTCTCATTAATTTTTTTTTATTGGAGGTAATTGGATTTTTTTTTTTTAGTGGAACCGAAGTGCGTTTGTCTGTTTCTGAAGCTGTTGATGTTTTGCTAGCGGAGATCAATTGCTTCTTTCAGAAGAATGTTGCTATGGAGGTTGTGGTCGAGTGCCAGGATATCCCAGGGTCACGAAATGATGCAGTCTTCCTGGAAAACTTGTCCTCTAGTTCCTCTTTCACAGCCTCAACCCTGGATCATCTGAAATTGGGCCTTGAGGATTATGTATCAAGGCATGGATCTAGTTTGACGTGTGACTCTTGCTTCCCTAACAGGGATAATCTGAAGAGTGGGGGTGGAATGATTTGTGAAGAAAAGCGTAAAACGACCACACTGGCAGTGGAGGCAGCGATTGTGATAAGTGAATTATCAAATCCGACCACTAATTGCTTGGGAGCACGGTTCTCCGATACAGAGGTTGTTTTTTGTTTTAAAGATTTTGCACCTTGCTCGATCTCTGAGGCATTTCTAAAGGCATTAAGAGGCATTGACTGGAAACGTTATGGTTTGTCTTTGGAAAGTGCTACCAATCAAAGAAGCCATGCATTACTAAAGTGGGAACACGTGCCCCTATCTTTTCATATTCATATTGTTGTCCACTGCTACCAGAAGCTTGTGGCCGAGGTCATGCCATTGGTGCAGAAGACTCAGTTTGATAAAAAACTCATAAGTAAAGCAGTTAAGCTTGCACTGGACGATTTGAAGAATAAATATGCGGGCTTTCTTCTCAGTGCCAATACCCTGAAGATCAGTAGGTTTGCCCCTGATCTTGCCAAAACGATTGCTGGCCTAGTTTTATACTCCAATGACTTGGATTTCCAAGAAGAATGCCTTGCAATTCTTGGCTTGCAACCTCAACAATCAGAAGGGGAAATTGTTGAAGAAAATATTAAGGAAAGGATAATTTCAGTCATTGAGGTGAATGACGGAAGGCCAAAAGGAACAAAAGAAGTTGCCCCTCTCTTGTTTGGAGATGGTCGCCACCAACTACAGTTTGTGGACGATGAATGTGATGAAGATGGATTTGATCCAATGGAGTTG

Protein sequence

KKLLPLNCLLQLISSAIRRCICSERLCRLSVLLQRSAASDPPLVCISISDTGLGSCLEEFQDFKCPVEGILAEQWDFCDNEISCYQLNLKENVTIREPIWLPSNVKHGVKFRHGITGTFWSLLINFFLLEVIGFFFFSGTEVRLSVSEAVDVLLAEINCFFQKNVAMEVVVECQDIPGSRNDAVFLENLSSSSSFTASTLDHLKLGLEDYVSRHGSSLTCDSCFPNRDNLKSGGGMICEEKRKTTTLAVEAAIVISELSNPTTNCLGARFSDTEVVFCFKDFAPCSISEAFLKALRGIDWKRYGLSLESATNQRSHALLKWEHVPLSFHIHIVVHCYQKLVAEVMPLVQKTQFDKKLISKAVKLALDDLKNKYAGFLLSANTLKISRFAPDLAKTIAGLVLYSNDLDFQEECLAILGLQPQQSEGEIVEENIKERIISVIEVNDGRPKGTKEVAPLLFGDGRHQLQFVDDECDEDGFDPMEL

Homology

[Close]

BLAST of MS000894 vs. NCBI nr
Match: XP_022131879.1 (type 2 DNA topoisomerase 6 subunit B-like isoform X1 [Momordica charantia])

HSP 1 Score: 855.9 bits (2210), Expect = 1.7e-244
Identity = 445/489 (91.00%), Postives = 445/489 (91.00%), Query Frame = 0


Query: 10  LQLISSAIRRCICSERLCRLSVLLQRSAASDPPLVCISISDTGLGSCLEEFQDFKCPVEG 69
           L LISSAIRRCICSERLCRLSVLLQRSAASDPPLVCISISDTGLGSCLEEFQDFKCPVEG
Sbjct: 11  LLLISSAIRRCICSERLCRLSVLLQRSAASDPPLVCISISDTGLGSCLEEFQDFKCPVEG 70

Query: 70  ILAEQWD---------FCDNEISCYQLNLKENVTIREPIWLPSNVKHGVKFRHGITGTFW 129
           ILAEQWD         FCDNEISCYQLNLKENVTIREPIWLPSNVKHGVK          
Sbjct: 71  ILAEQWDGIVSLRTTNFCDNEISCYQLNLKENVTIREPIWLPSNVKHGVK---------- 130

Query: 130 SLLINFFLLEVIGFFFFSGTEVRLSVSEAVDVLLAEINCFFQK-------NVAMEVVVEC 189
                           FSGTEVRLSVSEAVDVLLAEINCFFQK       NVAMEVVVEC
Sbjct: 131 ----------------FSGTEVRLSVSEAVDVLLAEINCFFQKIRILKIPNVAMEVVVEC 190

Query: 190 QDIPGSRNDAVFLENLSSSSSFTASTLDHLKLGLEDYVSRHGSSLTCDSCFPNRDNLKSG 249
           QDIPGSRNDAVFLENLSSSSSFTASTLDHLKLGLEDYVSRHGSSLTCDSCFPNRDNLKSG
Sbjct: 191 QDIPGSRNDAVFLENLSSSSSFTASTLDHLKLGLEDYVSRHGSSLTCDSCFPNRDNLKSG 250

Query: 250 GGMICEEKRKTTTLAVEAAIVISELSNPTTNCLGARFSDTEVVFCFKDFAPCSISEAFLK 309
           GGMICEEKRKTTTLAVEAAIVISELSNPTTNCLGARFSDTE VFCFKDFAPCSISEAFLK
Sbjct: 251 GGMICEEKRKTTTLAVEAAIVISELSNPTTNCLGARFSDTE-VFCFKDFAPCSISEAFLK 310

Query: 310 ALRGIDWKRYGLSLESATNQRSHALLKWEHVPLSFHIHIVVHCYQKLVAEVMPLVQKTQF 369
           ALRGIDWKRYGLSLESATNQRSHALLKWEHVPLSFHIHIVVHCYQKLVAEVMPLVQKTQF
Sbjct: 311 ALRGIDWKRYGLSLESATNQRSHALLKWEHVPLSFHIHIVVHCYQKLVAEVMPLVQKTQF 370

Query: 370 DKKLISKAVKLALDDLKNKYAGFLLSANTLKISRFAPDLAKTIAGLVLYSNDLDFQEECL 429
           DKKLISKAVKLALDDLKNKYAGFLLSANTLKISRFAPDLAKTIAGLVLYSNDLDFQEECL
Sbjct: 371 DKKLISKAVKLALDDLKNKYAGFLLSANTLKISRFAPDLAKTIAGLVLYSNDLDFQEECL 430

Query: 430 AILGLQPQQSEGEIVEENIKERIISVIEVNDGRPKGTKEVAPLLFGDGRHQLQFVDDECD 483
           AILGLQPQQSEGEIVEENIKERIISVIEVNDGRPKGTKEVAPLLFGDGRHQLQFVDDECD
Sbjct: 431 AILGLQPQQSEGEIVEENIKERIISVIEVNDGRPKGTKEVAPLLFGDGRHQLQFVDDECD 472

[Close]

BLAST of MS000894 vs. NCBI nr
Match: XP_022131880.1 (type 2 DNA topoisomerase 6 subunit B-like isoform X2 [Momordica charantia])

HSP 1 Score: 845.9 bits (2184), Expect = 1.7e-241
Identity = 442/489 (90.39%), Postives = 443/489 (90.59%), Query Frame = 0


Query: 10  LQLISSAIRRCICSERLCRLSVLLQRSAASDPPLVCISISDTGLGSCLEEFQDFKCPVEG 69
           L LISSAIRRCICSERLCRLSVLLQRSAASDPPLVC  IS+TGLGSCLEEFQDFKCPVEG
Sbjct: 11  LLLISSAIRRCICSERLCRLSVLLQRSAASDPPLVC--ISNTGLGSCLEEFQDFKCPVEG 70

Query: 70  ILAEQWD---------FCDNEISCYQLNLKENVTIREPIWLPSNVKHGVKFRHGITGTFW 129
           ILAEQWD         FCDNEISCYQLNLKENVTIREPIWLPSNVKHGVK          
Sbjct: 71  ILAEQWDGIVSLRTTNFCDNEISCYQLNLKENVTIREPIWLPSNVKHGVK---------- 130

Query: 130 SLLINFFLLEVIGFFFFSGTEVRLSVSEAVDVLLAEINCFFQK-------NVAMEVVVEC 189
                           FSGTEVRLSVSEAVDVLLAEINCFFQK       NVAMEVVVEC
Sbjct: 131 ----------------FSGTEVRLSVSEAVDVLLAEINCFFQKIRILKIPNVAMEVVVEC 190

Query: 190 QDIPGSRNDAVFLENLSSSSSFTASTLDHLKLGLEDYVSRHGSSLTCDSCFPNRDNLKSG 249
           QDIPGSRNDAVFLENLSSSSSFTASTLDHLKLGLEDYVSRHGSSLTCDSCFPNRDNLKSG
Sbjct: 191 QDIPGSRNDAVFLENLSSSSSFTASTLDHLKLGLEDYVSRHGSSLTCDSCFPNRDNLKSG 250

Query: 250 GGMICEEKRKTTTLAVEAAIVISELSNPTTNCLGARFSDTEVVFCFKDFAPCSISEAFLK 309
           GGMICEEKRKTTTLAVEAAIVISELSNPTTNCLGARFSDTE VFCFKDFAPCSISEAFLK
Sbjct: 251 GGMICEEKRKTTTLAVEAAIVISELSNPTTNCLGARFSDTE-VFCFKDFAPCSISEAFLK 310

Query: 310 ALRGIDWKRYGLSLESATNQRSHALLKWEHVPLSFHIHIVVHCYQKLVAEVMPLVQKTQF 369
           ALRGIDWKRYGLSLESATNQRSHALLKWEHVPLSFHIHIVVHCYQKLVAEVMPLVQKTQF
Sbjct: 311 ALRGIDWKRYGLSLESATNQRSHALLKWEHVPLSFHIHIVVHCYQKLVAEVMPLVQKTQF 370

Query: 370 DKKLISKAVKLALDDLKNKYAGFLLSANTLKISRFAPDLAKTIAGLVLYSNDLDFQEECL 429
           DKKLISKAVKLALDDLKNKYAGFLLSANTLKISRFAPDLAKTIAGLVLYSNDLDFQEECL
Sbjct: 371 DKKLISKAVKLALDDLKNKYAGFLLSANTLKISRFAPDLAKTIAGLVLYSNDLDFQEECL 430

Query: 430 AILGLQPQQSEGEIVEENIKERIISVIEVNDGRPKGTKEVAPLLFGDGRHQLQFVDDECD 483
           AILGLQPQQSEGEIVEENIKERIISVIEVNDGRPKGTKEVAPLLFGDGRHQLQFVDDECD
Sbjct: 431 AILGLQPQQSEGEIVEENIKERIISVIEVNDGRPKGTKEVAPLLFGDGRHQLQFVDDECD 470

[Close]

BLAST of MS000894 vs. NCBI nr
Match: XP_023545219.1 (type 2 DNA topoisomerase 6 subunit B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 706.1 bits (1821), Expect = 2.1e-199
Identity = 367/491 (74.75%), Postives = 405/491 (82.48%), Query Frame = 0


Query: 8   CLLQLISSAIRRCICSERLCRLSVLLQRSAASDPPLVCISISDTGLGSCLEEFQDFKCPV 67
           CLL LISSAIRRCICSERLCRLSVLLQRS ASDPPLV ISISDTGLGSC+EEFQ+ KCPV
Sbjct: 10  CLL-LISSAIRRCICSERLCRLSVLLQRSPASDPPLVRISISDTGLGSCIEEFQNLKCPV 69

Query: 68  EGILAEQW---------DFCDNEISCYQLNLKENVTIREPIWLPSNVKHGVKFRHGITGT 127
           EGILAE W         + CD EISCY+LNLKENVT R+PI LPSN+KHGVK        
Sbjct: 70  EGILAETWNGIVYVRTTNICDKEISCYELNLKENVTTRKPILLPSNIKHGVK-------- 129

Query: 128 FWSLLINFFLLEVIGFFFFSGTEVRLSVSEAVDVLLAEINCFFQK-------NVAMEVVV 187
                             FSGTEV LSVSE+VDVLL E NCFFQK       N+AMEV+ 
Sbjct: 130 ------------------FSGTEVCLSVSESVDVLLEEFNCFFQKILVLKVPNIAMEVMA 189

Query: 188 ECQDIPGSRNDAVFLENLSSSSSFTASTLDHLKLGLEDYVSRHGSSLTCDSCFPNRDNLK 247
           + QD+PGSRNDAVFLE +S+SSSF ASTLDHLKLGLE YV RHGSSL CDSCFPNRDNL+
Sbjct: 190 DGQDVPGSRNDAVFLEKISTSSSFAASTLDHLKLGLESYVLRHGSSLACDSCFPNRDNLR 249

Query: 248 SGGGMICEEKRKTTTLAVEAAIVISELSNPTTNCLGARFSDTEVVFCFKDFAPCSISEAF 307
           SGGGM+CE+K KTT L VEAA+V SE+SNPT NC GA  SDT+V+ CFKDFAPCSISEA 
Sbjct: 250 SGGGMVCEDKHKTTKLVVEAAVVTSEISNPTNNCFGAGCSDTKVL-CFKDFAPCSISEAL 309

Query: 308 LKALRGIDWKRYGLSLESATNQRSHALLKWEHVPLSFHIHIVVHCYQKLVAEVMPLVQKT 367
           LKAL GIDWKRYGL+LE A +QRSHALLKWEH+PLSFHIHIVVHCY KLV E MPL+QKT
Sbjct: 310 LKALTGIDWKRYGLALECAIDQRSHALLKWEHMPLSFHIHIVVHCYDKLVFEAMPLLQKT 369

Query: 368 QFDKKLISKAVKLALDDLKNKYAGFLLSANTLKISRFAPDLAKTIAGLVLYSNDLDFQEE 427
           +FDKKLI KAVKLALDD KNK+AG LLSA+TLKIS+FAPDLAK+IAGLVLYS+D+DF+EE
Sbjct: 370 RFDKKLIRKAVKLALDDFKNKHAGVLLSADTLKISKFAPDLAKSIAGLVLYSSDMDFKEE 429

Query: 428 CLAILGLQPQQSEGEIVEENIKERIISVIEVNDGRPKGTKEVAPLLFGDGRHQLQFVDDE 483
           CLAILGLQP QSEGEIV ENIK++IIS IEVND R +GTKEVAPLLF +GRH+LQFVDDE
Sbjct: 430 CLAILGLQPHQSEGEIVGENIKKKIISAIEVNDRRQQGTKEVAPLLF-EGRHELQFVDDE 471

[Close]

BLAST of MS000894 vs. NCBI nr
Match: XP_022962327.1 (type 2 DNA topoisomerase 6 subunit B-like isoform X6 [Cucurbita moschata])

HSP 1 Score: 698.0 bits (1800), Expect = 5.8e-197
Identity = 363/491 (73.93%), Postives = 401/491 (81.67%), Query Frame = 0


Query: 8   CLLQLISSAIRRCICSERLCRLSVLLQRSAASDPPLVCISISDTGLGSCLEEFQDFKCPV 67
           CLL LIS AIRRCICSERLCRLSVLLQRS ASDPPLV ISISDTGLGSC+EEFQ+ KCPV
Sbjct: 10  CLL-LISLAIRRCICSERLCRLSVLLQRSPASDPPLVRISISDTGLGSCIEEFQNLKCPV 69

Query: 68  EGILAEQW---------DFCDNEISCYQLNLKENVTIREPIWLPSNVKHGVKFRHGITGT 127
           EGILAE W         + CD EISCY+LNLKENVT R+PI LPSN+KHGVK        
Sbjct: 70  EGILAETWNGIVYVRTTNICDKEISCYELNLKENVTTRKPILLPSNIKHGVK-------- 129

Query: 128 FWSLLINFFLLEVIGFFFFSGTEVRLSVSEAVDVLLAEINCFFQK-------NVAMEVVV 187
                             FSGTEV LSVSE+VDVLL E NCFFQK       N+AMEV+ 
Sbjct: 130 ------------------FSGTEVCLSVSESVDVLLEEFNCFFQKILVLKVPNIAMEVMA 189

Query: 188 ECQDIPGSRNDAVFLENLSSSSSFTASTLDHLKLGLEDYVSRHGSSLTCDSCFPNRDNLK 247
           + QD+PGSRNDAVFLE  S SSSF ASTLDHLKLGLE YV RHGSSL CDSCFPNRDNL+
Sbjct: 190 DGQDVPGSRNDAVFLEKFSPSSSFAASTLDHLKLGLESYVLRHGSSLACDSCFPNRDNLR 249

Query: 248 SGGGMICEEKRKTTTLAVEAAIVISELSNPTTNCLGARFSDTEVVFCFKDFAPCSISEAF 307
           SGGGM+CE+K KTT L VEAA+V SE+ NPT NC GA  SDT+V+ CFKDFAPCSISEA 
Sbjct: 250 SGGGMVCEDKHKTTKLVVEAAVVTSEIPNPTNNCFGAGCSDTKVL-CFKDFAPCSISEAL 309

Query: 308 LKALRGIDWKRYGLSLESATNQRSHALLKWEHVPLSFHIHIVVHCYQKLVAEVMPLVQKT 367
           LKAL GIDWKRYGL+LE A +QRSHALLKWEH+PLSFHIHIVVHCY KLV E MPL+QKT
Sbjct: 310 LKALTGIDWKRYGLALECAIDQRSHALLKWEHMPLSFHIHIVVHCYDKLVFEAMPLLQKT 369

Query: 368 QFDKKLISKAVKLALDDLKNKYAGFLLSANTLKISRFAPDLAKTIAGLVLYSNDLDFQEE 427
           +FDKKLI KAVKLALDD KNK+AG LLSA+TLKIS+FAPDLAK+IAGLVLYS+D+DF+EE
Sbjct: 370 RFDKKLIRKAVKLALDDFKNKHAGVLLSADTLKISKFAPDLAKSIAGLVLYSSDMDFKEE 429

Query: 428 CLAILGLQPQQSEGEIVEENIKERIISVIEVNDGRPKGTKEVAPLLFGDGRHQLQFVDDE 483
           CLAILGLQP QSEGEIV ENIK++IIS IEVND R +GT+EVAPLLF +GRH+LQ+VDDE
Sbjct: 430 CLAILGLQPHQSEGEIVGENIKKKIISAIEVNDRRQQGTREVAPLLF-EGRHELQYVDDE 471

[Close]

BLAST of MS000894 vs. NCBI nr
Match: XP_022962325.1 (type 2 DNA topoisomerase 6 subunit B-like isoform X4 [Cucurbita moschata])

HSP 1 Score: 693.0 bits (1787), Expect = 1.9e-195
Identity = 363/504 (72.02%), Postives = 401/504 (79.56%), Query Frame = 0


Query: 8   CLLQLISSAIRRCICSERLCRLSVLLQRSAASDPPLVCISISDTGLGSCLEEFQDFKCPV 67
           CLL LIS AIRRCICSERLCRLSVLLQRS ASDPPLV ISISDTGLGSC+EEFQ+ KCPV
Sbjct: 10  CLL-LISLAIRRCICSERLCRLSVLLQRSPASDPPLVRISISDTGLGSCIEEFQNLKCPV 69

Query: 68  EGILAEQWDFCDNEISCYQLNLKENVTIREPIWLPSNVKHGVKFRHGITGTFWSLLINFF 127
           EGILAE W+ CD EISCY+LNLKENVT R+PI LPSN+KHGVK                 
Sbjct: 70  EGILAETWNICDKEISCYELNLKENVTTRKPILLPSNIKHGVK----------------- 129

Query: 128 LLEVIGFFFFSGTEVRLSVSEAVDVLLAEINCFFQK-------NVAMEVVVECQDIPGSR 187
                    FSGTEV LSVSE+VDVLL E NCFFQK       N+AMEV+ + QD+PGSR
Sbjct: 130 ---------FSGTEVCLSVSESVDVLLEEFNCFFQKILVLKVPNIAMEVMADGQDVPGSR 189

Query: 188 NDAVFLENLSSSSSFTASTLDHLKLGLEDYVSRHGSSLTCDSCFPNRDNLKSGGGMICEE 247
           NDAVFLE  S SSSF ASTLDHLKLGLE YV RHGSSL CDSCFPNRDNL+SGGGM+CE+
Sbjct: 190 NDAVFLEKFSPSSSFAASTLDHLKLGLESYVLRHGSSLACDSCFPNRDNLRSGGGMVCED 249

Query: 248 KRKTTTLAVEAAIVISELSNPTTNCLGARFSDTEVVFCFKDFAPCSISEAFLKALRGIDW 307
           K KTT L VEAA+V SE+ NPT NC GA  SDT+V+ CFKDFAPCSISEA LKAL GIDW
Sbjct: 250 KHKTTKLVVEAAVVTSEIPNPTNNCFGAGCSDTKVL-CFKDFAPCSISEALLKALTGIDW 309

Query: 308 KRYGLSLESATNQRSHALLKWEHVPLSFHIHIVVHCYQKLVAEVMPLVQKTQFDKKLISK 367
           KRYGL+LE A +QRSHALLKWEH+PLSFHIHIVVHCY KLV E MPL+QKT+FDKKLI K
Sbjct: 310 KRYGLALECAIDQRSHALLKWEHMPLSFHIHIVVHCYDKLVFEAMPLLQKTRFDKKLIRK 369

Query: 368 AVKLALDDLKNKYAGFLLSANTLK----------------------ISRFAPDLAKTIAG 427
           AVKLALDD KNK+AG LLSA+TLK                      IS+FAPDLAK+IAG
Sbjct: 370 AVKLALDDFKNKHAGVLLSADTLKVLACSRRNQEQLPKLASIFHLQISKFAPDLAKSIAG 429

Query: 428 LVLYSNDLDFQEECLAILGLQPQQSEGEIVEENIKERIISVIEVNDGRPKGTKEVAPLLF 483
           LVLYS+D+DF+EECLAILGLQP QSEGEIV ENIK++IIS IEVND R +GT+EVAPLLF
Sbjct: 430 LVLYSSDMDFKEECLAILGLQPHQSEGEIVGENIKKKIISAIEVNDRRQQGTREVAPLLF 484

[Close]

BLAST of MS000894 vs. ExPASy Swiss-Prot
Match: Q5Q0E6 (Type 2 DNA topoisomerase 6 subunit B-like OS=Arabidopsis thaliana OX=3702 GN=MTOPVIB PE=1 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 2.0e-91
Identity = 201/482 (41.70%), Postives = 277/482 (57.47%), Query Frame = 0


Query: 9   LLQLISSAIRRCICSERLCRLSVLLQRSAASDPPLVCISISDTGLGSCLEEFQDFKCPVE 68
           LLQLISSA +RC  +E LCRLSVLL +S   DPP+ CISI+DTG+G  LEEFQ+ +CP E
Sbjct: 11  LLQLISSAFQRCRLAEDLCRLSVLLDQSTERDPPITCISIADTGIGCNLEEFQNLRCPRE 70

Query: 69  GILAEQWD---------FCDNEISCYQLNLKENVTIREPIWLPSNVKHGVKFRHGITGTF 128
              A+ WD         F D+E+  Y +NL E +  +     PS  K+G K         
Sbjct: 71  FNGAKIWDGLLSVKTTCFTDDEVYYYHINLDEYIANKRLKRQPSQAKNGAK--------- 130

Query: 129 WSLLINFFLLEVIGFFFFSGTEVRLSVSEAVDVLLAEINCFFQK-------NVAMEVVVE 188
                            FSGTEV LSV  ++DVL+A I  FFQK       NV ++++V+
Sbjct: 131 -----------------FSGTEVSLSVFGSMDVLVAPIIGFFQKIIVLQILNVTLDLMVK 190

Query: 189 CQDIPGSRNDAVFLENLSSSSSFTASTLDHLKLGLEDYVSRHGSSL--TCDSCFPNRDNL 248
               PG++   VF  N   +  FTAS L+ LK GLEDYV RH + L   CD CF +R++L
Sbjct: 191 QGTSPGNQTQYVFAVNADKTPCFTASNLERLKSGLEDYVLRHANCLDTMCDYCFSDREHL 250

Query: 249 KSGGGMIC-EEKRKTTTLAVEAAIVISELSNPTTNCLGARFSDTEVVFCFKDFAPCSISE 308
           K G G +C E+K K     +E  IVIS+L   T +C  +    TEV++ F +F P  +  
Sbjct: 251 KVGSGTVCQEDKHKRVGGTMEVVIVISDLLESTQHCSRSCNGKTEVLY-FDNFLPSPVPH 310

Query: 309 AFLKALRGIDWKRYGLSLESATNQRSHALLKWEHVPLSFHIHIVVHCYQKLVAEVMPLVQ 368
             L AL+ IDWK+YGL L +  +Q  H  L+W++ P    I I +H Y        P  Q
Sbjct: 311 LALSALKKIDWKKYGLILANVNDQDGHVFLEWDNFPSYVQIQIALHWYH----NQYPTRQ 370

Query: 369 KTQFDKKLISKAVKLALDDLKNKYAGFLLSANTLKISRFAPDLAKTIAGLVLYSNDLDFQ 428
           K      L+ K +K ALD+LK K+ GFLLS+++ KI  + PDLA++IAGL+  S DLDFQ
Sbjct: 371 KNGPGISLLKKGIKNALDNLKAKHEGFLLSSHSRKICSYVPDLARSIAGLIFSSTDLDFQ 430

Query: 429 EECLAILGLQPQQSEGEIVEENIKERIISVIEVNDGRPKGTKEVAPLLFGDGRHQLQFVD 472
            +CL++LG Q Q+ E + VE  I+ +I++VI +N+ +P+  +E AP LF DG  +  F +
Sbjct: 431 GDCLSVLGFQTQEVERDTVENYIQRKIVTVIGMNERKPQKDQEAAPFLFFDGESETSFFE 461

[Close]

BLAST of MS000894 vs. ExPASy TrEMBL
Match: A0A6J1BRH4 (type 2 DNA topoisomerase 6 subunit B-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111004913 PE=4 SV=1)

HSP 1 Score: 855.9 bits (2210), Expect = 8.1e-245
Identity = 445/489 (91.00%), Postives = 445/489 (91.00%), Query Frame = 0


Query: 10  LQLISSAIRRCICSERLCRLSVLLQRSAASDPPLVCISISDTGLGSCLEEFQDFKCPVEG 69
           L LISSAIRRCICSERLCRLSVLLQRSAASDPPLVCISISDTGLGSCLEEFQDFKCPVEG
Sbjct: 11  LLLISSAIRRCICSERLCRLSVLLQRSAASDPPLVCISISDTGLGSCLEEFQDFKCPVEG 70

Query: 70  ILAEQWD---------FCDNEISCYQLNLKENVTIREPIWLPSNVKHGVKFRHGITGTFW 129
           ILAEQWD         FCDNEISCYQLNLKENVTIREPIWLPSNVKHGVK          
Sbjct: 71  ILAEQWDGIVSLRTTNFCDNEISCYQLNLKENVTIREPIWLPSNVKHGVK---------- 130

Query: 130 SLLINFFLLEVIGFFFFSGTEVRLSVSEAVDVLLAEINCFFQK-------NVAMEVVVEC 189
                           FSGTEVRLSVSEAVDVLLAEINCFFQK       NVAMEVVVEC
Sbjct: 131 ----------------FSGTEVRLSVSEAVDVLLAEINCFFQKIRILKIPNVAMEVVVEC 190

Query: 190 QDIPGSRNDAVFLENLSSSSSFTASTLDHLKLGLEDYVSRHGSSLTCDSCFPNRDNLKSG 249
           QDIPGSRNDAVFLENLSSSSSFTASTLDHLKLGLEDYVSRHGSSLTCDSCFPNRDNLKSG
Sbjct: 191 QDIPGSRNDAVFLENLSSSSSFTASTLDHLKLGLEDYVSRHGSSLTCDSCFPNRDNLKSG 250

Query: 250 GGMICEEKRKTTTLAVEAAIVISELSNPTTNCLGARFSDTEVVFCFKDFAPCSISEAFLK 309
           GGMICEEKRKTTTLAVEAAIVISELSNPTTNCLGARFSDTE VFCFKDFAPCSISEAFLK
Sbjct: 251 GGMICEEKRKTTTLAVEAAIVISELSNPTTNCLGARFSDTE-VFCFKDFAPCSISEAFLK 310

Query: 310 ALRGIDWKRYGLSLESATNQRSHALLKWEHVPLSFHIHIVVHCYQKLVAEVMPLVQKTQF 369
           ALRGIDWKRYGLSLESATNQRSHALLKWEHVPLSFHIHIVVHCYQKLVAEVMPLVQKTQF
Sbjct: 311 ALRGIDWKRYGLSLESATNQRSHALLKWEHVPLSFHIHIVVHCYQKLVAEVMPLVQKTQF 370

Query: 370 DKKLISKAVKLALDDLKNKYAGFLLSANTLKISRFAPDLAKTIAGLVLYSNDLDFQEECL 429
           DKKLISKAVKLALDDLKNKYAGFLLSANTLKISRFAPDLAKTIAGLVLYSNDLDFQEECL
Sbjct: 371 DKKLISKAVKLALDDLKNKYAGFLLSANTLKISRFAPDLAKTIAGLVLYSNDLDFQEECL 430

Query: 430 AILGLQPQQSEGEIVEENIKERIISVIEVNDGRPKGTKEVAPLLFGDGRHQLQFVDDECD 483
           AILGLQPQQSEGEIVEENIKERIISVIEVNDGRPKGTKEVAPLLFGDGRHQLQFVDDECD
Sbjct: 431 AILGLQPQQSEGEIVEENIKERIISVIEVNDGRPKGTKEVAPLLFGDGRHQLQFVDDECD 472

[Close]

BLAST of MS000894 vs. ExPASy TrEMBL
Match: A0A6J1BQX4 (type 2 DNA topoisomerase 6 subunit B-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111004913 PE=4 SV=1)

HSP 1 Score: 845.9 bits (2184), Expect = 8.4e-242
Identity = 442/489 (90.39%), Postives = 443/489 (90.59%), Query Frame = 0


Query: 10  LQLISSAIRRCICSERLCRLSVLLQRSAASDPPLVCISISDTGLGSCLEEFQDFKCPVEG 69
           L LISSAIRRCICSERLCRLSVLLQRSAASDPPLVC  IS+TGLGSCLEEFQDFKCPVEG
Sbjct: 11  LLLISSAIRRCICSERLCRLSVLLQRSAASDPPLVC--ISNTGLGSCLEEFQDFKCPVEG 70

Query: 70  ILAEQWD---------FCDNEISCYQLNLKENVTIREPIWLPSNVKHGVKFRHGITGTFW 129
           ILAEQWD         FCDNEISCYQLNLKENVTIREPIWLPSNVKHGVK          
Sbjct: 71  ILAEQWDGIVSLRTTNFCDNEISCYQLNLKENVTIREPIWLPSNVKHGVK---------- 130

Query: 130 SLLINFFLLEVIGFFFFSGTEVRLSVSEAVDVLLAEINCFFQK-------NVAMEVVVEC 189
                           FSGTEVRLSVSEAVDVLLAEINCFFQK       NVAMEVVVEC
Sbjct: 131 ----------------FSGTEVRLSVSEAVDVLLAEINCFFQKIRILKIPNVAMEVVVEC 190

Query: 190 QDIPGSRNDAVFLENLSSSSSFTASTLDHLKLGLEDYVSRHGSSLTCDSCFPNRDNLKSG 249
           QDIPGSRNDAVFLENLSSSSSFTASTLDHLKLGLEDYVSRHGSSLTCDSCFPNRDNLKSG
Sbjct: 191 QDIPGSRNDAVFLENLSSSSSFTASTLDHLKLGLEDYVSRHGSSLTCDSCFPNRDNLKSG 250

Query: 250 GGMICEEKRKTTTLAVEAAIVISELSNPTTNCLGARFSDTEVVFCFKDFAPCSISEAFLK 309
           GGMICEEKRKTTTLAVEAAIVISELSNPTTNCLGARFSDTE VFCFKDFAPCSISEAFLK
Sbjct: 251 GGMICEEKRKTTTLAVEAAIVISELSNPTTNCLGARFSDTE-VFCFKDFAPCSISEAFLK 310

Query: 310 ALRGIDWKRYGLSLESATNQRSHALLKWEHVPLSFHIHIVVHCYQKLVAEVMPLVQKTQF 369
           ALRGIDWKRYGLSLESATNQRSHALLKWEHVPLSFHIHIVVHCYQKLVAEVMPLVQKTQF
Sbjct: 311 ALRGIDWKRYGLSLESATNQRSHALLKWEHVPLSFHIHIVVHCYQKLVAEVMPLVQKTQF 370

Query: 370 DKKLISKAVKLALDDLKNKYAGFLLSANTLKISRFAPDLAKTIAGLVLYSNDLDFQEECL 429
           DKKLISKAVKLALDDLKNKYAGFLLSANTLKISRFAPDLAKTIAGLVLYSNDLDFQEECL
Sbjct: 371 DKKLISKAVKLALDDLKNKYAGFLLSANTLKISRFAPDLAKTIAGLVLYSNDLDFQEECL 430

Query: 430 AILGLQPQQSEGEIVEENIKERIISVIEVNDGRPKGTKEVAPLLFGDGRHQLQFVDDECD 483
           AILGLQPQQSEGEIVEENIKERIISVIEVNDGRPKGTKEVAPLLFGDGRHQLQFVDDECD
Sbjct: 431 AILGLQPQQSEGEIVEENIKERIISVIEVNDGRPKGTKEVAPLLFGDGRHQLQFVDDECD 470

[Close]

BLAST of MS000894 vs. ExPASy TrEMBL
Match: A0A6J1HCF2 (type 2 DNA topoisomerase 6 subunit B-like isoform X6 OS=Cucurbita moschata OX=3662 GN=LOC111462807 PE=4 SV=1)

HSP 1 Score: 698.0 bits (1800), Expect = 2.8e-197
Identity = 363/491 (73.93%), Postives = 401/491 (81.67%), Query Frame = 0


Query: 8   CLLQLISSAIRRCICSERLCRLSVLLQRSAASDPPLVCISISDTGLGSCLEEFQDFKCPV 67
           CLL LIS AIRRCICSERLCRLSVLLQRS ASDPPLV ISISDTGLGSC+EEFQ+ KCPV
Sbjct: 10  CLL-LISLAIRRCICSERLCRLSVLLQRSPASDPPLVRISISDTGLGSCIEEFQNLKCPV 69

Query: 68  EGILAEQW---------DFCDNEISCYQLNLKENVTIREPIWLPSNVKHGVKFRHGITGT 127
           EGILAE W         + CD EISCY+LNLKENVT R+PI LPSN+KHGVK        
Sbjct: 70  EGILAETWNGIVYVRTTNICDKEISCYELNLKENVTTRKPILLPSNIKHGVK-------- 129

Query: 128 FWSLLINFFLLEVIGFFFFSGTEVRLSVSEAVDVLLAEINCFFQK-------NVAMEVVV 187
                             FSGTEV LSVSE+VDVLL E NCFFQK       N+AMEV+ 
Sbjct: 130 ------------------FSGTEVCLSVSESVDVLLEEFNCFFQKILVLKVPNIAMEVMA 189

Query: 188 ECQDIPGSRNDAVFLENLSSSSSFTASTLDHLKLGLEDYVSRHGSSLTCDSCFPNRDNLK 247
           + QD+PGSRNDAVFLE  S SSSF ASTLDHLKLGLE YV RHGSSL CDSCFPNRDNL+
Sbjct: 190 DGQDVPGSRNDAVFLEKFSPSSSFAASTLDHLKLGLESYVLRHGSSLACDSCFPNRDNLR 249

Query: 248 SGGGMICEEKRKTTTLAVEAAIVISELSNPTTNCLGARFSDTEVVFCFKDFAPCSISEAF 307
           SGGGM+CE+K KTT L VEAA+V SE+ NPT NC GA  SDT+V+ CFKDFAPCSISEA 
Sbjct: 250 SGGGMVCEDKHKTTKLVVEAAVVTSEIPNPTNNCFGAGCSDTKVL-CFKDFAPCSISEAL 309

Query: 308 LKALRGIDWKRYGLSLESATNQRSHALLKWEHVPLSFHIHIVVHCYQKLVAEVMPLVQKT 367
           LKAL GIDWKRYGL+LE A +QRSHALLKWEH+PLSFHIHIVVHCY KLV E MPL+QKT
Sbjct: 310 LKALTGIDWKRYGLALECAIDQRSHALLKWEHMPLSFHIHIVVHCYDKLVFEAMPLLQKT 369

Query: 368 QFDKKLISKAVKLALDDLKNKYAGFLLSANTLKISRFAPDLAKTIAGLVLYSNDLDFQEE 427
           +FDKKLI KAVKLALDD KNK+AG LLSA+TLKIS+FAPDLAK+IAGLVLYS+D+DF+EE
Sbjct: 370 RFDKKLIRKAVKLALDDFKNKHAGVLLSADTLKISKFAPDLAKSIAGLVLYSSDMDFKEE 429

Query: 428 CLAILGLQPQQSEGEIVEENIKERIISVIEVNDGRPKGTKEVAPLLFGDGRHQLQFVDDE 483
           CLAILGLQP QSEGEIV ENIK++IIS IEVND R +GT+EVAPLLF +GRH+LQ+VDDE
Sbjct: 430 CLAILGLQPHQSEGEIVGENIKKKIISAIEVNDRRQQGTREVAPLLF-EGRHELQYVDDE 471

[Close]

BLAST of MS000894 vs. ExPASy TrEMBL
Match: A0A6J1HEQ4 (type 2 DNA topoisomerase 6 subunit B-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111462807 PE=4 SV=1)

HSP 1 Score: 693.0 bits (1787), Expect = 9.1e-196
Identity = 363/504 (72.02%), Postives = 401/504 (79.56%), Query Frame = 0


Query: 8   CLLQLISSAIRRCICSERLCRLSVLLQRSAASDPPLVCISISDTGLGSCLEEFQDFKCPV 67
           CLL LIS AIRRCICSERLCRLSVLLQRS ASDPPLV ISISDTGLGSC+EEFQ+ KCPV
Sbjct: 10  CLL-LISLAIRRCICSERLCRLSVLLQRSPASDPPLVRISISDTGLGSCIEEFQNLKCPV 69

Query: 68  EGILAEQWDFCDNEISCYQLNLKENVTIREPIWLPSNVKHGVKFRHGITGTFWSLLINFF 127
           EGILAE W+ CD EISCY+LNLKENVT R+PI LPSN+KHGVK                 
Sbjct: 70  EGILAETWNICDKEISCYELNLKENVTTRKPILLPSNIKHGVK----------------- 129

Query: 128 LLEVIGFFFFSGTEVRLSVSEAVDVLLAEINCFFQK-------NVAMEVVVECQDIPGSR 187
                    FSGTEV LSVSE+VDVLL E NCFFQK       N+AMEV+ + QD+PGSR
Sbjct: 130 ---------FSGTEVCLSVSESVDVLLEEFNCFFQKILVLKVPNIAMEVMADGQDVPGSR 189

Query: 188 NDAVFLENLSSSSSFTASTLDHLKLGLEDYVSRHGSSLTCDSCFPNRDNLKSGGGMICEE 247
           NDAVFLE  S SSSF ASTLDHLKLGLE YV RHGSSL CDSCFPNRDNL+SGGGM+CE+
Sbjct: 190 NDAVFLEKFSPSSSFAASTLDHLKLGLESYVLRHGSSLACDSCFPNRDNLRSGGGMVCED 249

Query: 248 KRKTTTLAVEAAIVISELSNPTTNCLGARFSDTEVVFCFKDFAPCSISEAFLKALRGIDW 307
           K KTT L VEAA+V SE+ NPT NC GA  SDT+V+ CFKDFAPCSISEA LKAL GIDW
Sbjct: 250 KHKTTKLVVEAAVVTSEIPNPTNNCFGAGCSDTKVL-CFKDFAPCSISEALLKALTGIDW 309

Query: 308 KRYGLSLESATNQRSHALLKWEHVPLSFHIHIVVHCYQKLVAEVMPLVQKTQFDKKLISK 367
           KRYGL+LE A +QRSHALLKWEH+PLSFHIHIVVHCY KLV E MPL+QKT+FDKKLI K
Sbjct: 310 KRYGLALECAIDQRSHALLKWEHMPLSFHIHIVVHCYDKLVFEAMPLLQKTRFDKKLIRK 369

Query: 368 AVKLALDDLKNKYAGFLLSANTLK----------------------ISRFAPDLAKTIAG 427
           AVKLALDD KNK+AG LLSA+TLK                      IS+FAPDLAK+IAG
Sbjct: 370 AVKLALDDFKNKHAGVLLSADTLKVLACSRRNQEQLPKLASIFHLQISKFAPDLAKSIAG 429

Query: 428 LVLYSNDLDFQEECLAILGLQPQQSEGEIVEENIKERIISVIEVNDGRPKGTKEVAPLLF 483
           LVLYS+D+DF+EECLAILGLQP QSEGEIV ENIK++IIS IEVND R +GT+EVAPLLF
Sbjct: 430 LVLYSSDMDFKEECLAILGLQPHQSEGEIVGENIKKKIISAIEVNDRRQQGTREVAPLLF 484

[Close]

BLAST of MS000894 vs. ExPASy TrEMBL
Match: A0A6J1K810 (type 2 DNA topoisomerase 6 subunit B-like isoform X5 OS=Cucurbita maxima OX=3661 GN=LOC111491995 PE=4 SV=1)

HSP 1 Score: 692.2 bits (1785), Expect = 1.5e-195
Identity = 361/491 (73.52%), Postives = 398/491 (81.06%), Query Frame = 0


Query: 8   CLLQLISSAIRRCICSERLCRLSVLLQRSAASDPPLVCISISDTGLGSCLEEFQDFKCPV 67
           CLL LISSAIRRCICSERLCRLSVLLQRS ASDPPLV ISISDTGLGSC+EEFQ+ KCPV
Sbjct: 10  CLL-LISSAIRRCICSERLCRLSVLLQRSPASDPPLVRISISDTGLGSCIEEFQNLKCPV 69

Query: 68  EGILAEQW---------DFCDNEISCYQLNLKENVTIREPIWLPSNVKHGVKFRHGITGT 127
           EGILAE W         + CD EISCYQLNLKENVT R+PI LPSN+KHGVK        
Sbjct: 70  EGILAETWNGIVYVRTTNICDKEISCYQLNLKENVTTRKPILLPSNIKHGVK-------- 129

Query: 128 FWSLLINFFLLEVIGFFFFSGTEVRLSVSEAVDVLLAEINCFFQK-------NVAMEVVV 187
                             FSGTEV LSVSE++DVLL E NCFFQK       N+AMEV+ 
Sbjct: 130 ------------------FSGTEVCLSVSESIDVLLEEFNCFFQKILVLKVPNIAMEVMA 189

Query: 188 ECQDIPGSRNDAVFLENLSSSSSFTASTLDHLKLGLEDYVSRHGSSLTCDSCFPNRDNLK 247
           + QD+PGSRNDAVFLE  S SSSF ASTLDHLK GLE YV RHGSSL CDSCFPNRDNL+
Sbjct: 190 DGQDVPGSRNDAVFLEKFSPSSSFAASTLDHLKFGLESYVLRHGSSLACDSCFPNRDNLR 249

Query: 248 SGGGMICEEKRKTTTLAVEAAIVISELSNPTTNCLGARFSDTEVVFCFKDFAPCSISEAF 307
           SGGGM+CE+K KTT L VEAA+V +E+SNPT NC  A  S+T+V+ CFKDFAPCSISEA 
Sbjct: 250 SGGGMVCEDKHKTTKLVVEAAVVTTEISNPTNNCFRAGCSNTKVL-CFKDFAPCSISEAL 309

Query: 308 LKALRGIDWKRYGLSLESATNQRSHALLKWEHVPLSFHIHIVVHCYQKLVAEVMPLVQKT 367
           LKAL GIDWKRYGL+LE A +QRSHALLKWEH+PLSFHIHIVVHCY K V E MPL+QKT
Sbjct: 310 LKALTGIDWKRYGLALECAIDQRSHALLKWEHMPLSFHIHIVVHCYDKHVFEAMPLLQKT 369

Query: 368 QFDKKLISKAVKLALDDLKNKYAGFLLSANTLKISRFAPDLAKTIAGLVLYSNDLDFQEE 427
           +FDKKLI KAVKLALDD KNK+AG LLSA+TLKIS+FAPDLAK+IAGLVLYS+D+DF+EE
Sbjct: 370 RFDKKLIRKAVKLALDDFKNKHAGVLLSADTLKISKFAPDLAKSIAGLVLYSSDMDFKEE 429

Query: 428 CLAILGLQPQQSEGEIVEENIKERIISVIEVNDGRPKGTKEVAPLLFGDGRHQLQFVDDE 483
           CLAILGLQP QSEGEIV ENIK +IIS IEVND R +GTKEVAPLLF +GRH+LQFVDDE
Sbjct: 430 CLAILGLQPHQSEGEIVGENIKNKIISAIEVNDRRQQGTKEVAPLLF-EGRHELQFVDDE 471

[Close]

BLAST of MS000894 vs. TAIR 10
Match: AT1G60460.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 23 Blast hits to 23 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 339.0 bits (868), Expect = 6.4e-93
Identity = 203/486 (41.77%), Postives = 279/486 (57.41%), Query Frame = 0


Query: 9   LLQLISSAIRRCICSERLCRLSVLLQRSAASDPPLVCISISDTGLGSCLEEFQDFKCPVE 68
           LLQLISSA +RC  +E LCRLSVLL +S   DPP+ CISI+DTG+G  LEEFQ+ +CP E
Sbjct: 11  LLQLISSAFQRCRLAEDLCRLSVLLDQSTERDPPITCISIADTGIGCNLEEFQNLRCPRE 70

Query: 69  GILAEQWD---------FCDNEISCYQLNLKENVTIREPIWLPSNVKHGVKFRHGITGTF 128
              A+ WD         F D+E+  Y +NL E +  +     PS  K+G K         
Sbjct: 71  FNGAKIWDGLLSVKTTCFTDDEVYYYHINLDEYIANKRLKRQPSQAKNGAK--------- 130

Query: 129 WSLLINFFLLEVIGFFFFSGTEVRLSVSEAVDVLLAEINCFFQK-------NVAMEVVVE 188
                            FSGTEV LSV  ++DVL+A I  FFQK       NV ++++V+
Sbjct: 131 -----------------FSGTEVSLSVFGSMDVLVAPIIGFFQKIIVLQILNVTLDLMVK 190

Query: 189 CQDIPGSRNDAVFLENLSSSSSFTASTLDHLKLGLEDYVSRHGSSL--TCDSCFPNRDNL 248
               PG++   VF  N   +  FTAS L+ LK GLEDYV RH + L   CD CF +R++L
Sbjct: 191 QGTSPGNQTQYVFAVNADKTPCFTASNLERLKSGLEDYVLRHANCLDTMCDYCFSDREHL 250

Query: 249 KSGGGMIC-EEKRKTTTLAVEAAIVISELSNPTTNCLGARFSDTEVVFCFKDFAPCSISE 308
           K G G +C E+K K     +E  IVIS+L   T +C  +    TEV++ F +F P  +  
Sbjct: 251 KVGSGTVCQEDKHKRVGGTMEVVIVISDLLESTQHCSRSCNGKTEVLY-FDNFLPSPVPH 310

Query: 309 AFLKALRGIDWKRYGLSLESATNQRSHALLKWEHVPLSFHIHIVVHCYQKLVAEVMPLVQ 368
             L AL+ IDWK+YGL L +  +Q  H  L+W++ P    I I +H Y        P  Q
Sbjct: 311 LALSALKKIDWKKYGLILANVNDQDGHVFLEWDNFPSYVQIQIALHWYH----NQYPTRQ 370

Query: 369 KTQFDKKLISKAVKLALDDLKNKYAGFLLSANTLKISRFAPDLAKTIAGLVLYSNDLDFQ 428
           K      L+ K +K ALD+LK K+ GFLLS+++ KI  + PDLA++IAGL+  S DLDFQ
Sbjct: 371 KNGPGISLLKKGIKNALDNLKAKHEGFLLSSHSRKICSYVPDLARSIAGLIFSSTDLDFQ 430

Query: 429 EECLAILGLQPQQSEGEIVEENIKERIISVIEVNDGRPKGTKEVAPLLFGDGRHQLQFVD 476
            +CL++LG Q Q+ E + VE  I+ +I++VI +N+ +P+  +E AP LF DG  +  F +
Sbjct: 431 GDCLSVLGFQTQEVERDTVENYIQRKIVTVIGMNERKPQKDQEAAPFLFFDGESETSFFE 465

[Close]

BLAST of MS000894 vs. TAIR 10
Match: AT1G60460.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 337.8 bits (865), Expect = 1.4e-92
Identity = 201/482 (41.70%), Postives = 277/482 (57.47%), Query Frame = 0


Query: 9   LLQLISSAIRRCICSERLCRLSVLLQRSAASDPPLVCISISDTGLGSCLEEFQDFKCPVE 68
           LLQLISSA +RC  +E LCRLSVLL +S   DPP+ CISI+DTG+G  LEEFQ+ +CP E
Sbjct: 11  LLQLISSAFQRCRLAEDLCRLSVLLDQSTERDPPITCISIADTGIGCNLEEFQNLRCPRE 70

Query: 69  GILAEQWD---------FCDNEISCYQLNLKENVTIREPIWLPSNVKHGVKFRHGITGTF 128
              A+ WD         F D+E+  Y +NL E +  +     PS  K+G K         
Sbjct: 71  FNGAKIWDGLLSVKTTCFTDDEVYYYHINLDEYIANKRLKRQPSQAKNGAK--------- 130

Query: 129 WSLLINFFLLEVIGFFFFSGTEVRLSVSEAVDVLLAEINCFFQK-------NVAMEVVVE 188
                            FSGTEV LSV  ++DVL+A I  FFQK       NV ++++V+
Sbjct: 131 -----------------FSGTEVSLSVFGSMDVLVAPIIGFFQKIIVLQILNVTLDLMVK 190

Query: 189 CQDIPGSRNDAVFLENLSSSSSFTASTLDHLKLGLEDYVSRHGSSL--TCDSCFPNRDNL 248
               PG++   VF  N   +  FTAS L+ LK GLEDYV RH + L   CD CF +R++L
Sbjct: 191 QGTSPGNQTQYVFAVNADKTPCFTASNLERLKSGLEDYVLRHANCLDTMCDYCFSDREHL 250

Query: 249 KSGGGMIC-EEKRKTTTLAVEAAIVISELSNPTTNCLGARFSDTEVVFCFKDFAPCSISE 308
           K G G +C E+K K     +E  IVIS+L   T +C  +    TEV++ F +F P  +  
Sbjct: 251 KVGSGTVCQEDKHKRVGGTMEVVIVISDLLESTQHCSRSCNGKTEVLY-FDNFLPSPVPH 310

Query: 309 AFLKALRGIDWKRYGLSLESATNQRSHALLKWEHVPLSFHIHIVVHCYQKLVAEVMPLVQ 368
             L AL+ IDWK+YGL L +  +Q  H  L+W++ P    I I +H Y        P  Q
Sbjct: 311 LALSALKKIDWKKYGLILANVNDQDGHVFLEWDNFPSYVQIQIALHWYH----NQYPTRQ 370

Query: 369 KTQFDKKLISKAVKLALDDLKNKYAGFLLSANTLKISRFAPDLAKTIAGLVLYSNDLDFQ 428
           K      L+ K +K ALD+LK K+ GFLLS+++ KI  + PDLA++IAGL+  S DLDFQ
Sbjct: 371 KNGPGISLLKKGIKNALDNLKAKHEGFLLSSHSRKICSYVPDLARSIAGLIFSSTDLDFQ 430

Query: 429 EECLAILGLQPQQSEGEIVEENIKERIISVIEVNDGRPKGTKEVAPLLFGDGRHQLQFVD 472
            +CL++LG Q Q+ E + VE  I+ +I++VI +N+ +P+  +E AP LF DG  +  F +
Sbjct: 431 GDCLSVLGFQTQEVERDTVENYIQRKIVTVIGMNERKPQKDQEAAPFLFFDGESETSFFE 461

[Close]

BLAST of MS000894 vs. TAIR 10
Match: AT1G60460.2 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 324.7 bits (831), Expect = 1.2e-88
Identity = 192/472 (40.68%), Postives = 268/472 (56.78%), Query Frame = 0


Query: 19  RCICSERLCRLSVLLQRSAASDPPLVCISISDTGLGSCLEEFQDFKCPVEGILAEQWD-- 78
           +C  +E LCRLSVLL +S   DPP+ CISI+DTG+G  LEEFQ+ +CP E   A+ WD  
Sbjct: 10  KCRLAEDLCRLSVLLDQSTERDPPITCISIADTGIGCNLEEFQNLRCPREFNGAKIWDGL 69

Query: 79  -------FCDNEISCYQLNLKENVTIREPIWLPSNVKHGVKFRHGITGTFWSLLINFFLL 138
                  F D+E+  Y +NL E +  +     PS  K+G K                   
Sbjct: 70  LSVKTTCFTDDEVYYYHINLDEYIANKRLKRQPSQAKNGAK------------------- 129

Query: 139 EVIGFFFFSGTEVRLSVSEAVDVLLAEINCFFQK-------NVAMEVVVECQDIPGSRND 198
                  FSGTEV LSV  ++DVL+A I  FFQK       NV ++++V+    PG++  
Sbjct: 130 -------FSGTEVSLSVFGSMDVLVAPIIGFFQKIIVLQILNVTLDLMVKQGTSPGNQTQ 189

Query: 199 AVFLENLSSSSSFTASTLDHLKLGLEDYVSRHGSSL--TCDSCFPNRDNLKSGGGMIC-E 258
            VF  N   +  FTAS L+ LK GLEDYV RH + L   CD CF +R++LK G G +C E
Sbjct: 190 YVFAVNADKTPCFTASNLERLKSGLEDYVLRHANCLDTMCDYCFSDREHLKVGSGTVCQE 249

Query: 259 EKRKTTTLAVEAAIVISELSNPTTNCLGARFSDTEVVFCFKDFAPCSISEAFLKALRGID 318
           +K K     +E  IVIS+L   T +C  +    TEV++ F +F P  +    L AL+ ID
Sbjct: 250 DKHKRVGGTMEVVIVISDLLESTQHCSRSCNGKTEVLY-FDNFLPSPVPHLALSALKKID 309

Query: 319 WKRYGLSLESATNQRSHALLKWEHVPLSFHIHIVVHCYQKLVAEVMPLVQKTQFDKKLIS 378
           WK+YGL L +  +Q  H  L+W++ P    I I +H Y        P  QK      L+ 
Sbjct: 310 WKKYGLILANVNDQDGHVFLEWDNFPSYVQIQIALHWYH----NQYPTRQKNGPGISLLK 369

Query: 379 KAVKLALDDLKNKYAGFLLSANTLKISRFAPDLAKTIAGLVLYSNDLDFQEECLAILGLQ 438
           K +K ALD+LK K+ GFLLS+++ KI  + PDLA++IAGL+  S DLDFQ +CL++LG Q
Sbjct: 370 KGIKNALDNLKAKHEGFLLSSHSRKICSYVPDLARSIAGLIFSSTDLDFQGDCLSVLGFQ 429

Query: 439 PQQSEGEIVEENIKERIISVIEVNDGRPKGTKEVAPLLFGDGRHQLQFVDDE 472
            Q+ E + VE  I+ +I++VI +N+ +P+  +E AP LF DG  +  F +DE
Sbjct: 430 TQEVERDTVENYIQRKIVTVIGMNERKPQKDQEAAPFLFFDGESETSFFEDE 450

The following BLAST results are available for this feature:

BLAST of MS000894 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131879.1	1.7e-244	91.00	type 2 DNA topoisomerase 6 subunit B-like isoform X1 [Momordica charantia]	[more]
XP_022131880.1	1.7e-241	90.39	type 2 DNA topoisomerase 6 subunit B-like isoform X2 [Momordica charantia]	[more]
XP_023545219.1	2.1e-199	74.75	type 2 DNA topoisomerase 6 subunit B-like [Cucurbita pepo subsp. pepo]	[more]
XP_022962327.1	5.8e-197	73.93	type 2 DNA topoisomerase 6 subunit B-like isoform X6 [Cucurbita moschata]	[more]
XP_022962325.1	1.9e-195	72.02	type 2 DNA topoisomerase 6 subunit B-like isoform X4 [Cucurbita moschata]	[more]

BLAST of MS000894 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5Q0E6	2.0e-91	41.70	Type 2 DNA topoisomerase 6 subunit B-like OS=Arabidopsis thaliana OX=3702 GN=MTO...	[more]

BLAST of MS000894 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BRH4	8.1e-245	91.00	type 2 DNA topoisomerase 6 subunit B-like isoform X1 OS=Momordica charantia OX=3...	[more]
A0A6J1BQX4	8.4e-242	90.39	type 2 DNA topoisomerase 6 subunit B-like isoform X2 OS=Momordica charantia OX=3...	[more]
A0A6J1HCF2	2.8e-197	73.93	type 2 DNA topoisomerase 6 subunit B-like isoform X6 OS=Cucurbita moschata OX=36...	[more]
A0A6J1HEQ4	9.1e-196	72.02	type 2 DNA topoisomerase 6 subunit B-like isoform X4 OS=Cucurbita moschata OX=36...	[more]
A0A6J1K810	1.5e-195	73.52	type 2 DNA topoisomerase 6 subunit B-like isoform X5 OS=Cucurbita maxima OX=3661...	[more]

BLAST of MS000894 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60460.1	6.4e-93	41.77	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G60460.3	1.4e-92	41.70	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G60460.2	1.2e-88	40.68	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR034566	Type 2 DNA topoisomerase 6 subunit B-like, plants	PANTHER	PTHR36722	TYPE 2 DNA TOPOISOMERASE 6 SUBUNIT B-LIKE	coord: 8..475

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000894.1	MS000894.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042138	meiotic DNA double-strand break formation