MS000889 (gene) Bitter gourd (TR) v1

Overview


Name	MS000889
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	AMSH-like ubiquitin thioesterase 2 isoform X1
Location	scaffold36: 88771 .. 88942 (+)
RNA-Seq Expression	MS000889
Synteny	MS000889

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGAGCTTTGGAATATTTCGACTGAGTGATCCGGGTGGGATGAGGAGTCTGAGAGAGTGAAAAGGATGGTTTTCACCCTAACAGAGATCCGGAAGATGGTAGCCCCATTTACGAGCTCTGCTCTACTGTCTACCAAAATTCCAACTTGAGATTCGAAATCATTGACTTGCGT

mRNA sequence

AGGAGCTTTGGAATATTTCGACTGAGTGATCCGGGTGGGATGAGGAGTCTGAGAGAGGAAAAGGATGGTTTTCACCCTAACAGAGATCCGGAAGATGGTAGCCCCATTTACGAGCTCTGCTCTACTGTCTACCAAAATTCCAACTTGAGATTCGAAATCATTGACTTGCGT

Coding sequence (CDS)

AGGAGCTTTGGAATATTTCGACTGAGTGATCCGGGTGGGATGAGGAGTCTGAGAGAGGAAAAGGATGGTTTTCACCCTAACAGAGATCCGGAAGATGGTAGCCCCATTTACGAGCTCTGCTCTACTGTCTACCAAAATTCCAACTTGAGATTCGAAATCATTGACTTGCGT

Protein sequence

RSFGIFRLSDPGGMRSLREEKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR

Homology

[Close]

BLAST of MS000889 vs. NCBI nr
Match: XP_023545741.1 (AMSH-like ubiquitin thioesterase 2 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107.5 bits (267), Expect = 4.0e-20
Identity = 50/58 (86.21%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1   RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR 58
           RSFGIFRLSDPGGM+ LRE ++DGFHP++DPEDGSPIYELCS VYQNSNLRFEIIDLR
Sbjct: 207 RSFGIFRLSDPGGMKILRECQEDGFHPHKDPEDGSPIYELCSNVYQNSNLRFEIIDLR 264

[Close]

BLAST of MS000889 vs. NCBI nr
Match: KAG6598210.1 (AMSH-like ubiquitin thioesterase 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107.5 bits (267), Expect = 4.0e-20
Identity = 50/58 (86.21%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1   RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR 58
           RSFGIFRLSDPGGM+ LRE ++DGFHP++DPEDGSPIYELCS VYQNSNLRFEIIDLR
Sbjct: 182 RSFGIFRLSDPGGMKILRECQEDGFHPHKDPEDGSPIYELCSNVYQNSNLRFEIIDLR 239

[Close]

BLAST of MS000889 vs. NCBI nr
Match: XP_023545743.1 (AMSH-like ubiquitin thioesterase 2 isoform X5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107.5 bits (267), Expect = 4.0e-20
Identity = 50/58 (86.21%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1   RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR 58
           RSFGIFRLSDPGGM+ LRE ++DGFHP++DPEDGSPIYELCS VYQNSNLRFEIIDLR
Sbjct: 191 RSFGIFRLSDPGGMKILRECQEDGFHPHKDPEDGSPIYELCSNVYQNSNLRFEIIDLR 248

[Close]

BLAST of MS000889 vs. NCBI nr
Match: XP_023545742.1 (AMSH-like ubiquitin thioesterase 2 isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107.5 bits (267), Expect = 4.0e-20
Identity = 50/58 (86.21%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1   RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR 58
           RSFGIFRLSDPGGM+ LRE ++DGFHP++DPEDGSPIYELCS VYQNSNLRFEIIDLR
Sbjct: 206 RSFGIFRLSDPGGMKILRECQEDGFHPHKDPEDGSPIYELCSNVYQNSNLRFEIIDLR 263

[Close]

BLAST of MS000889 vs. NCBI nr
Match: XP_023545750.1 (AMSH-like ubiquitin thioesterase 2 isoform X9 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107.5 bits (267), Expect = 4.0e-20
Identity = 50/58 (86.21%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1   RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR 58
           RSFGIFRLSDPGGM+ LRE ++DGFHP++DPEDGSPIYELCS VYQNSNLRFEIIDLR
Sbjct: 181 RSFGIFRLSDPGGMKILRECQEDGFHPHKDPEDGSPIYELCSNVYQNSNLRFEIIDLR 238

[Close]

BLAST of MS000889 vs. ExPASy Swiss-Prot
Match: Q6NKP9 (AMSH-like ubiquitin thioesterase 2 OS=Arabidopsis thaliana OX=3702 GN=AMSH2 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 7.3e-17
Identity = 38/58 (65.52%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1   RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR 58
           +S+GIF+L+DPGGM  LR   + GFHP+++PEDG+P+YE CS VY+NSNLRFEI DLR
Sbjct: 166 KSYGIFKLTDPGGMEVLRGCSETGFHPHKEPEDGNPVYEHCSNVYKNSNLRFEIFDLR 223

[Close]

BLAST of MS000889 vs. ExPASy Swiss-Prot
Match: Q8VYB5 (AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana OX=3702 GN=AMSH1 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.4e-12
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 1   RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR 58
           R+ GIFRL+ PGGM  +R  ++ GFH +  PEDG PIY  C  VY N NL+F++IDLR
Sbjct: 450 RNHGIFRLTTPGGMTVIRNCDRRGFHAHSSPEDGGPIYNTCKEVYMNPNLKFDVIDLR 507

[Close]

BLAST of MS000889 vs. ExPASy Swiss-Prot
Match: Q5PNU3 (AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2)

HSP 1 Score: 67.4 bits (163), Expect = 6.0e-11
Identity = 29/55 (52.73%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 4   GIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR 58
           GIF LSDP G+  +R  ++ GFHP+ + EDG+PIYE CS V+ N+ L++E++DLR
Sbjct: 453 GIFHLSDPSGVSVIRNCQQRGFHPHEESEDGNPIYEHCSHVFLNAKLKYEVLDLR 507

[Close]

BLAST of MS000889 vs. ExPASy TrEMBL
Match: A0A6J1BPX0 (LOW QUALITY PROTEIN: AMSH-like ubiquitin thioesterase 2 OS=Momordica charantia OX=3673 GN=LOC111004729 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 9.6e-20
Identity = 51/57 (89.47%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 1   RSFGIFRLSDPGGMRSLREEKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR 58
           RSFGIFRLSDPGG      EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR
Sbjct: 57  RSFGIFRLSDPGG------EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR 107

[Close]

BLAST of MS000889 vs. ExPASy TrEMBL
Match: A0A6J1HCT2 (AMSH-like ubiquitin thioesterase 2 isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111462445 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.2e-19
Identity = 49/58 (84.48%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 1   RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR 58
           RSFGIFRLSDPGGM+ LRE ++DGFHP++ PEDGSPIYELCS VYQNSNLRFEIIDLR
Sbjct: 182 RSFGIFRLSDPGGMKILRECQEDGFHPHKGPEDGSPIYELCSNVYQNSNLRFEIIDLR 239

[Close]

BLAST of MS000889 vs. ExPASy TrEMBL
Match: A0A6J1HBA2 (AMSH-like ubiquitin thioesterase 2 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111462445 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.2e-19
Identity = 49/58 (84.48%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 1   RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR 58
           RSFGIFRLSDPGGM+ LRE ++DGFHP++ PEDGSPIYELCS VYQNSNLRFEIIDLR
Sbjct: 186 RSFGIFRLSDPGGMKILRECQEDGFHPHKGPEDGSPIYELCSNVYQNSNLRFEIIDLR 243

[Close]

BLAST of MS000889 vs. ExPASy TrEMBL
Match: A0A6J1HF06 (AMSH-like ubiquitin thioesterase 2 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462445 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.2e-19
Identity = 49/58 (84.48%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 1   RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR 58
           RSFGIFRLSDPGGM+ LRE ++DGFHP++ PEDGSPIYELCS VYQNSNLRFEIIDLR
Sbjct: 207 RSFGIFRLSDPGGMKILRECQEDGFHPHKGPEDGSPIYELCSNVYQNSNLRFEIIDLR 264

[Close]

BLAST of MS000889 vs. ExPASy TrEMBL
Match: A0A6J1HD81 (AMSH-like ubiquitin thioesterase 2 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111462445 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.2e-19
Identity = 49/58 (84.48%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 1   RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR 58
           RSFGIFRLSDPGGM+ LRE ++DGFHP++ PEDGSPIYELCS VYQNSNLRFEIIDLR
Sbjct: 206 RSFGIFRLSDPGGMKILRECQEDGFHPHKGPEDGSPIYELCSNVYQNSNLRFEIIDLR 263

[Close]

BLAST of MS000889 vs. TAIR 10
Match: AT1G10600.1 (associated molecule with the SH3 domain of STAM 2 )

HSP 1 Score: 87.0 bits (214), Expect = 5.2e-18
Identity = 38/58 (65.52%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1   RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR 58
           +S+GIF+L+DPGGM  LR   + GFHP+++PEDG+P+YE CS VY+NSNLRFEI DLR
Sbjct: 166 KSYGIFKLTDPGGMEVLRGCSETGFHPHKEPEDGNPVYEHCSNVYKNSNLRFEIFDLR 223

[Close]

BLAST of MS000889 vs. TAIR 10
Match: AT1G10600.2 (associated molecule with the SH3 domain of STAM 2 )

HSP 1 Score: 87.0 bits (214), Expect = 5.2e-18
Identity = 38/58 (65.52%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1   RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR 58
           +S+GIF+L+DPGGM  LR   + GFHP+++PEDG+P+YE CS VY+NSNLRFEI DLR
Sbjct: 109 KSYGIFKLTDPGGMEVLRGCSETGFHPHKEPEDGNPVYEHCSNVYKNSNLRFEIFDLR 166

[Close]

BLAST of MS000889 vs. TAIR 10
Match: AT1G10600.3 (associated molecule with the SH3 domain of STAM 2 )

HSP 1 Score: 85.1 bits (209), Expect = 2.0e-17
Identity = 37/57 (64.91%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 2   SFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR 58
           ++GIF+L+DPGGM  LR   + GFHP+++PEDG+P+YE CS VY+NSNLRFEI DLR
Sbjct: 166 NYGIFKLTDPGGMEVLRGCSETGFHPHKEPEDGNPVYEHCSNVYKNSNLRFEIFDLR 222

[Close]

BLAST of MS000889 vs. TAIR 10
Match: AT1G48790.1 (associated molecule with the SH3 domain of STAM 1 )

HSP 1 Score: 72.8 bits (177), Expect = 1.0e-13
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 1   RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR 58
           R+ GIFRL+ PGGM  +R  ++ GFH +  PEDG PIY  C  VY N NL+F++IDLR
Sbjct: 450 RNHGIFRLTTPGGMTVIRNCDRRGFHAHSSPEDGGPIYNTCKEVYMNPNLKFDVIDLR 507

[Close]

BLAST of MS000889 vs. TAIR 10
Match: AT4G16144.1 (associated molecule with the SH3 domain of STAM 3 )

HSP 1 Score: 67.4 bits (163), Expect = 4.3e-12
Identity = 29/55 (52.73%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 4   GIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR 58
           GIF LSDP G+  +R  ++ GFHP+ + EDG+PIYE CS V+ N+ L++E++DLR
Sbjct: 453 GIFHLSDPSGVSVIRNCQQRGFHPHEESEDGNPIYEHCSHVFLNAKLKYEVLDLR 507

The following BLAST results are available for this feature:

BLAST of MS000889 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023545741.1	4.0e-20	86.21	AMSH-like ubiquitin thioesterase 2 isoform X3 [Cucurbita pepo subsp. pepo]	[more]
KAG6598210.1	4.0e-20	86.21	AMSH-like ubiquitin thioesterase 2, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_023545743.1	4.0e-20	86.21	AMSH-like ubiquitin thioesterase 2 isoform X5 [Cucurbita pepo subsp. pepo]	[more]
XP_023545742.1	4.0e-20	86.21	AMSH-like ubiquitin thioesterase 2 isoform X4 [Cucurbita pepo subsp. pepo]	[more]
XP_023545750.1	4.0e-20	86.21	AMSH-like ubiquitin thioesterase 2 isoform X9 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS000889 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NKP9	7.3e-17	65.52	AMSH-like ubiquitin thioesterase 2 OS=Arabidopsis thaliana OX=3702 GN=AMSH2 PE=2...	[more]
Q8VYB5	1.4e-12	55.17	AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana OX=3702 GN=AMSH1 PE=2...	[more]
Q5PNU3	6.0e-11	52.73	AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1...	[more]

BLAST of MS000889 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BPX0	9.6e-20	89.47	LOW QUALITY PROTEIN: AMSH-like ubiquitin thioesterase 2 OS=Momordica charantia O...	[more]
A0A6J1HCT2	1.2e-19	84.48	AMSH-like ubiquitin thioesterase 2 isoform X4 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1HBA2	1.2e-19	84.48	AMSH-like ubiquitin thioesterase 2 isoform X3 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1HF06	1.2e-19	84.48	AMSH-like ubiquitin thioesterase 2 isoform X1 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1HD81	1.2e-19	84.48	AMSH-like ubiquitin thioesterase 2 isoform X2 OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of MS000889 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10600.1	5.2e-18	65.52	associated molecule with the SH3 domain of STAM 2	[more]
AT1G10600.2	5.2e-18	65.52	associated molecule with the SH3 domain of STAM 2	[more]
AT1G10600.3	2.0e-17	64.91	associated molecule with the SH3 domain of STAM 2	[more]
AT1G48790.1	1.0e-13	55.17	associated molecule with the SH3 domain of STAM 1	[more]
AT4G16144.1	4.3e-12	52.73	associated molecule with the SH3 domain of STAM 3	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.140.10	Cytidine Deaminase, domain 2	coord: 1..57 e-value: 7.1E-7 score: 30.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..32
None	No IPR available	PANTHER	PTHR12947	AMSH-LIKE PROTEASE	coord: 1..57
None	No IPR available	PANTHER	PTHR12947:SF13	AMSH-LIKE UBIQUITIN THIOESTERASE 1	coord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000889.1	MS000889.1	mRNA