MS000888 (gene) Bitter gourd (TR) v1

Overview


Name	MS000888
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Nucleic acid-binding, OB-fold-like protein
Location	scaffold36: 81732 .. 84519 (-)
RNA-Seq Expression	MS000888
Synteny	MS000888

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAATGGCAGAATCAAAACCTGGACTGAGGAAACCGGTATTTACCAAGGTTGACCAACTTCGGCCTGGCACCAGTGGGCATACTCTTACAGTGAAGGTTGTGAATACTAAGATGGTATTACAGAAGGGTCGCCCTGATGGTCCTCAAGTCCGTCAGATGCGAATTGCTGAATGCTTGGTGGGTGATGAGACTGGAATGATCATATTTACTGCCAGAAATGATCAAGGTATATTTCAATAATATTTGAGAAAGCACCGTTTATCTTTTATGTCTTGTGTGAAGCATGCCAAATTTATTCTTTATGGTTACATTCTGTACATAATACTAAAAATTAGACGTTACACTGGTTCTTATATTCAATTATTTCACTGTGAAAGGTTGTTGATGCATTAACATCCTACTAGTAGAGATTTTATAAAGGTTTGAATCTTTCTGTTGTCTTAAAAGTAGTCGTGGACCTTTCTTTTTCGTGTACAATAAAGTACATTGTAACAACACTGTTATATACAGAGGTTGAAATACAAAGCCGATTGCAAGAAATCAGCCATAAAAAATGACCTGCTAAAGAAATCATAAGTTCATTACTTTTTCGATTATATGGGTTAGTGTAATAAATAATAGTCGGATAATCACTACAATAGTTCATTTCATGCTAGATGCTGGATTAAGGCAAAGACCATGCATTTGAAAGGGTAAGCTCTTTACTAAATCTTATGAAAAATAGTTTTGAAAAAACCTTATTTGTTGTATTCGGGTTTTGACCTTATGGGGGAAATTATTCCTATAAGGCCACCAGCTGTAGTTAATGTTGTTCCTTCCACCGGCTTCTTATATCTATTGATTACATTTGTTTATTTTTATATTTGGAATCTGATTATGCATAAGTGTGCGTTGTTCCCTATGCTGTATGTTAATTATTTTCTTTAACTGGATGTATTCTTAAGTTGGCATAGATGTTTTAACGATCATAAGATTTCAACCTATTAATTGAACAAGGGAGTAAGAGAATGAGAATTAATTTTCATTGATATTAAAATAACCATCTAGTTACTGAGACCTACTTGAAACCAGGAATTTTGGGTTATTGATTTTGGAGGAACTGTTTTTCTCTTGATTAATTACCTTCAGTAGTTTAAATAGTTGGTTTAAATGCATTTAAATATACTATGAATTGCTTATATGAAGTTTTAGTTTCGACTAATTTAATGTGTGTTCATTATTAATTGAACTAATTTTATTTTAGGATTAAATTTTGTTATGGTTATCGTCTTATCATTCACTTTGGAGAAATATATTACGAGAACAGTTTTTAGATTCAGGTCTATTTCATATTTCATCTTTACTATGCCTGAATTTTACCCCCCATTGGTTACCACTTCCTAAGAAGCATTGGACATGGTAACACTGTCATTTTCTAAAAATCTAACGAATGTCATAGCAAGGACCATTTACTAAATACACTTTGGGTATTCTTAAGCATTTAAGTTGTTTTCAGGTTCAAGCATGCTTCAAAGTCTGTTTTTAGCTTATAATATTTCCATTTAAAAGATAATGTAAAAGAAGTGATAGGATACGCATCACTTGTGCGAAGTTGTATAATTTTATTGATACAATGTCCTATAACCACTGGAAGCCCTATCTAAATTTACAGTAGTAGGGTGGACTAGATATGTCTTTAGTTCCTATATAACTAGCTAATATTGATAAAGGATTTGAAGAAAGTCTACAGCAATCTGAATATATTTCTAAAGGTTTGTTTTACAGTAATTGTTTATAGGAGTCGCGTGGTTGTTGTGTTTGTCAGATGTACATAAATTAACACTTGTTTCAATTATTATTTGTTTATTGCTAGTGAGTTCTATAAATTAATTTTTTAAAATGTATCTCAATATGTACTCTTATAGATCTACTTATTTGTATTATTTTTATGCCTAATTTATATTCATTTAAGATTTTCTTATTATATATTTAACAGTTCCATTTTCTATTATACTCATTTTATAAGGCAATGACATTAATTTACATAAGTAAAATCATATTGTTTTCCTAGAATTAGTTAAATGAATTGTTTATTTGAGAGATCTTTTTGGAATAAAGGAGGGAAAGATTGCTTACTTATTGCCAAACCGTTAAAAAGAAAGAAAAGAGTTGAATAGAAGTTGTCAATTGTTGAAGTTGCAAAGACTATCCCTTCAGCATAGGCTGATGAAAGAGGTGGACTACAATGGAATTTTGAGAAAGGTTGGTTTATGGTTGGAAAGATGGGAACAGGAGGTGTTGGAATGGGACAATTTTTATTAGATTGAACAATCTTATTGTTGACATGTGTACCTGTATGATTTGGGATGCTTTTATAGTTTGCCTAAAATTATAGCCTGTTTTTGTACATGAGATCATCTAGCTGCACTTTAGGCCTTCTTATTTGTTCCAACTGTTCCCTATGACTTAATCCTGTTCAATTAAGCAAACCATAGAGTAGATTATATTTTAATTTTGAATCTGTACTTGTAGCCACTGTTTTATTTGTTTACTTGGGTGGACGTATTTAATGCCTTTAAAGTTCCAAACTCATTTCTCGCATATCTTTGCTTTTTTCCGTATAGTGGACATGATGAAAGAAGGTGCTACCATTATTCTGCGCAATGCTAAGATAGACATGTTTAAAGGATCAATGAGACTTGCTGTGGATAGGTGGGGCCGAGTTGAAGTTACTGAGCCTGCCAGTTTTACTGTTAAAGAAGATAACAATCTTTCACTCATTGAATATGAACTTGTGAATGTGGTGGAA

mRNA sequence

GAAATGGCAGAATCAAAACCTGGACTGAGGAAACCGGTATTTACCAAGGTTGACCAACTTCGGCCTGGCACCAGTGGGCATACTCTTACAGTGAAGGTTGTGAATACTAAGATGGTATTACAGAAGGGTCGCCCTGATGGTCCTCAAGTCCGTCAGATGCGAATTGCTGAATGCTTGGTGGGTGATGAGACTGGAATGATCATATTTACTGCCAGAAATGATCAAGTGGACATGATGAAAGAAGGTGCTACCATTATTCTGCGCAATGCTAAGATAGACATGTTTAAAGGATCAATGAGACTTGCTGTGGATAGGTGGGGCCGAGTTGAAGTTACTGAGCCTGCCAGTTTTACTGTTAAAGAAGATAACAATCTTTCACTCATTGAATATGAACTTGTGAATGTGGTGGAA

Coding sequence (CDS)

GAAATGGCAGAATCAAAACCTGGACTGAGGAAACCGGTATTTACCAAGGTTGACCAACTTCGGCCTGGCACCAGTGGGCATACTCTTACAGTGAAGGTTGTGAATACTAAGATGGTATTACAGAAGGGTCGCCCTGATGGTCCTCAAGTCCGTCAGATGCGAATTGCTGAATGCTTGGTGGGTGATGAGACTGGAATGATCATATTTACTGCCAGAAATGATCAAGTGGACATGATGAAAGAAGGTGCTACCATTATTCTGCGCAATGCTAAGATAGACATGTTTAAAGGATCAATGAGACTTGCTGTGGATAGGTGGGGCCGAGTTGAAGTTACTGAGCCTGCCAGTTTTACTGTTAAAGAAGATAACAATCTTTCACTCATTGAATATGAACTTGTGAATGTGGTGGAA

Protein sequence

EMAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKEDNNLSLIEYELVNVVE

Homology

[Close]

BLAST of MS000888 vs. NCBI nr
Match: XP_022131585.1 (uncharacterized protein At4g28440-like [Momordica charantia])

HSP 1 Score: 270.4 bits (690), Expect = 8.5e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 2   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVG 61
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVG 60

Query: 62  DETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 121
           DETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE
Sbjct: 61  DETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 120

Query: 122 DNNLSLIEYELVNVVE 138
           DNNLSLIEYELVNVVE
Sbjct: 121 DNNLSLIEYELVNVVE 136

[Close]

BLAST of MS000888 vs. NCBI nr
Match: XP_022951207.1 (uncharacterized protein At4g28440-like [Cucurbita moschata] >XP_023001948.1 uncharacterized protein At4g28440-like [Cucurbita maxima] >XP_023538137.1 uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo] >XP_023538138.1 uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo] >KAG7020076.1 hypothetical protein SDJN02_16758 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 266.2 bits (679), Expect = 1.6e-67
Identity = 133/136 (97.79%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 2   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVG 61
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQ RQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 62  DETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 121
           DETGMIIFTARNDQVD+MKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 120

Query: 122 DNNLSLIEYELVNVVE 138
           +NNLSLIEYELVNVVE
Sbjct: 121 ENNLSLIEYELVNVVE 136

[Close]

BLAST of MS000888 vs. NCBI nr
Match: XP_004142984.1 (uncharacterized protein At4g28440 [Cucumis sativus] >XP_008444318.1 PREDICTED: uncharacterized protein At4g28440 isoform X1 [Cucumis melo] >XP_008444319.1 PREDICTED: uncharacterized protein At4g28440 isoform X1 [Cucumis melo] >XP_011649474.1 uncharacterized protein At4g28440 [Cucumis sativus] >KAA0061088.1 Nucleic acid-binding protein [Cucumis melo var. makuwa] >KGN62287.1 hypothetical protein Csa_018609 [Cucumis sativus])

HSP 1 Score: 264.6 bits (675), Expect = 4.7e-67
Identity = 132/136 (97.06%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 2   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVG 61
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQ RQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 62  DETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 121
           DETGMIIFTARNDQVD+MKEGATI LRNAKIDMFKGSMRLAVDRWGRVEVTEPA+FTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 120

Query: 122 DNNLSLIEYELVNVVE 138
           DNNLSLIEYELVNVVE
Sbjct: 121 DNNLSLIEYELVNVVE 136

[Close]

BLAST of MS000888 vs. NCBI nr
Match: XP_038883981.1 (uncharacterized protein At4g28440 [Benincasa hispida])

HSP 1 Score: 264.2 bits (674), Expect = 6.1e-67
Identity = 131/136 (96.32%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 2   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVG 61
           MAESKPGLRKPVFTK+DQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQ RQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKIDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 62  DETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 121
           DETGMIIFTARNDQVD+MKEGATI LRNAKIDMFKGSMRLAVDRWGRVEVTEPA+FTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPATFTVKE 120

Query: 122 DNNLSLIEYELVNVVE 138
           DNNLSLIEYELVNVVE
Sbjct: 121 DNNLSLIEYELVNVVE 136

[Close]

BLAST of MS000888 vs. NCBI nr
Match: XP_022961781.1 (uncharacterized protein At4g28440-like [Cucurbita moschata] >XP_022961782.1 uncharacterized protein At4g28440-like [Cucurbita moschata] >XP_023545751.1 uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 260.4 bits (664), Expect = 8.8e-66
Identity = 130/136 (95.59%), Postives = 132/136 (97.06%), Query Frame = 0


Query: 2   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVG 61
           MAESKPGLRKPVFTKVDQLRPGTSGHTL VKVVN KMVLQKGRPDGPQ RQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 62  DETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 121
           DETGMIIFTARNDQVD+MKEGATI LRNAKIDMFKGSMRLAVDRWGRVEVTEPA+FTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKE 120

Query: 122 DNNLSLIEYELVNVVE 138
           DNNLSLIEYELVNVVE
Sbjct: 121 DNNLSLIEYELVNVVE 136

[Close]

BLAST of MS000888 vs. ExPASy Swiss-Prot
Match: O49453 (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.6e-44
Identity = 89/132 (67.42%), Postives = 107/132 (81.06%), Query Frame = 0


Query: 10  RKPVFTKVDQLRPGTSGHTLTVKVVNTKMVL---QKGRPDGPQVR---QMRIAECLVGDE 69
           RKPVF KV+QL+PGT+GHTLTVKV+   +V+   +K RP     R     RI ECL+GDE
Sbjct: 18  RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDE 77

Query: 70  TGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKEDN 129
           TG I+FTARNDQVD+MK GAT+ILRN++IDMFKG+MRL VD+WGR+E T  ASFTVKEDN
Sbjct: 78  TGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDN 137

Query: 130 NLSLIEYELVNV 136
           NLSL+EYEL+NV
Sbjct: 138 NLSLVEYELINV 149

[Close]

BLAST of MS000888 vs. ExPASy TrEMBL
Match: A0A6J1BQ40 (uncharacterized protein At4g28440-like OS=Momordica charantia OX=3673 GN=LOC111004728 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 4.1e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 2   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVG 61
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVG 60

Query: 62  DETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 121
           DETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE
Sbjct: 61  DETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 120

Query: 122 DNNLSLIEYELVNVVE 138
           DNNLSLIEYELVNVVE
Sbjct: 121 DNNLSLIEYELVNVVE 136

[Close]

BLAST of MS000888 vs. ExPASy TrEMBL
Match: A0A6J1KS21 (uncharacterized protein At4g28440-like OS=Cucurbita maxima OX=3661 GN=LOC111495976 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 7.8e-68
Identity = 133/136 (97.79%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 2   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVG 61
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQ RQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 62  DETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 121
           DETGMIIFTARNDQVD+MKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 120

Query: 122 DNNLSLIEYELVNVVE 138
           +NNLSLIEYELVNVVE
Sbjct: 121 ENNLSLIEYELVNVVE 136

[Close]

BLAST of MS000888 vs. ExPASy TrEMBL
Match: A0A6J1GH14 (uncharacterized protein At4g28440-like OS=Cucurbita moschata OX=3662 GN=LOC111454116 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 7.8e-68
Identity = 133/136 (97.79%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 2   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVG 61
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQ RQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 62  DETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 121
           DETGMIIFTARNDQVD+MKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 120

Query: 122 DNNLSLIEYELVNVVE 138
           +NNLSLIEYELVNVVE
Sbjct: 121 ENNLSLIEYELVNVVE 136

[Close]

BLAST of MS000888 vs. ExPASy TrEMBL
Match: A0A1S3BA24 (uncharacterized protein At4g28440 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487687 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.3e-67
Identity = 132/136 (97.06%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 2   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVG 61
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQ RQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 62  DETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 121
           DETGMIIFTARNDQVD+MKEGATI LRNAKIDMFKGSMRLAVDRWGRVEVTEPA+FTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 120

Query: 122 DNNLSLIEYELVNVVE 138
           DNNLSLIEYELVNVVE
Sbjct: 121 DNNLSLIEYELVNVVE 136

[Close]

BLAST of MS000888 vs. ExPASy TrEMBL
Match: A0A5A7V0K6 (Nucleic acid-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G002290 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.3e-67
Identity = 132/136 (97.06%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 2   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVG 61
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQ RQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 62  DETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 121
           DETGMIIFTARNDQVD+MKEGATI LRNAKIDMFKGSMRLAVDRWGRVEVTEPA+FTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 120

Query: 122 DNNLSLIEYELVNVVE 138
           DNNLSLIEYELVNVVE
Sbjct: 121 DNNLSLIEYELVNVVE 136

[Close]

BLAST of MS000888 vs. TAIR 10
Match: AT1G23750.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 229.6 bits (584), Expect = 1.6e-60
Identity = 111/137 (81.02%), Postives = 127/137 (92.70%), Query Frame = 0


Query: 2   MAES-KPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLV 61
           MA+S K GL+KP FTKVDQLRPGTSGH + VK+V+TKMVLQKGR DGPQ RQ+RI+EC+V
Sbjct: 1   MADSTKAGLKKPAFTKVDQLRPGTSGHNVNVKIVSTKMVLQKGRADGPQARQLRISECIV 60

Query: 62  GDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVK 121
           GDETG+I+FTARNDQVD+MKEG+T+ LRNAKIDM+KGSMRLAVD+WGRVEVTEPASF VK
Sbjct: 61  GDETGVIVFTARNDQVDLMKEGSTVTLRNAKIDMYKGSMRLAVDKWGRVEVTEPASFKVK 120

Query: 122 EDNNLSLIEYELVNVVE 138
           ED N+SLIEYELVNVVE
Sbjct: 121 EDTNMSLIEYELVNVVE 137

[Close]

BLAST of MS000888 vs. TAIR 10
Match: AT1G10590.3 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 214.9 bits (546), Expect = 4.0e-56
Identity = 109/138 (78.99%), Postives = 123/138 (89.13%), Query Frame = 0


Query: 1   EMAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQK--GRPDGPQVRQMRIAEC 60
           +MAE+   LRKPVFTKV++LRPGT+GH+L VKVVNTKMV+Q+  GRP GPQ RQMRIAEC
Sbjct: 14  KMAEATSALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQMRIAEC 73

Query: 61  LVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVT-EPASF 120
           LVGDETG+IIFTARNDQVDMMKEG+ + LRNAKIDM+KGSMRLAVDRWGRVEV  EP   
Sbjct: 74  LVGDETGIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDI 133

Query: 121 TVKEDNNLSLIEYELVNV 136
           TVK+DNNLSLIEYELV+V
Sbjct: 134 TVKDDNNLSLIEYELVSV 151

[Close]

BLAST of MS000888 vs. TAIR 10
Match: AT1G10590.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 214.5 bits (545), Expect = 5.2e-56
Identity = 109/137 (79.56%), Postives = 122/137 (89.05%), Query Frame = 0


Query: 2   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQK--GRPDGPQVRQMRIAECL 61
           MAE+   LRKPVFTKV++LRPGT+GH+L VKVVNTKMV+Q+  GRP GPQ RQMRIAECL
Sbjct: 1   MAEATSALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQMRIAECL 60

Query: 62  VGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVT-EPASFT 121
           VGDETG+IIFTARNDQVDMMKEG+ + LRNAKIDM+KGSMRLAVDRWGRVEV  EP   T
Sbjct: 61  VGDETGIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDIT 120

Query: 122 VKEDNNLSLIEYELVNV 136
           VK+DNNLSLIEYELV+V
Sbjct: 121 VKDDNNLSLIEYELVSV 137

[Close]

BLAST of MS000888 vs. TAIR 10
Match: AT1G10590.2 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 214.5 bits (545), Expect = 5.2e-56
Identity = 109/137 (79.56%), Postives = 122/137 (89.05%), Query Frame = 0


Query: 2   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQK--GRPDGPQVRQMRIAECL 61
           MAE+   LRKPVFTKV++LRPGT+GH+L VKVVNTKMV+Q+  GRP GPQ RQMRIAECL
Sbjct: 1   MAEATSALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQMRIAECL 60

Query: 62  VGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVT-EPASFT 121
           VGDETG+IIFTARNDQVDMMKEG+ + LRNAKIDM+KGSMRLAVDRWGRVEV  EP   T
Sbjct: 61  VGDETGIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDIT 120

Query: 122 VKEDNNLSLIEYELVNV 136
           VK+DNNLSLIEYELV+V
Sbjct: 121 VKDDNNLSLIEYELVSV 137

[Close]

BLAST of MS000888 vs. TAIR 10
Match: AT2G33845.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 192.2 bits (487), Expect = 2.8e-49
Identity = 96/129 (74.42%), Postives = 108/129 (83.72%), Query Frame = 0


Query: 10  RKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQK-GRPDGPQVRQMRIAECLVGDETGMII 69
           +KPVF KVDQL+PGTSGHTLTVKVV+   V QK G      +R  RI+ECLVGDET  I+
Sbjct: 53  KKPVFVKVDQLKPGTSGHTLTVKVVDQNSVPQKPGAASSSHLRPARISECLVGDETACIL 112

Query: 70  FTARNDQVDMMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKEDNNLSLI 129
           FTARNDQV++MK GAT+ LRNAKIDMFKGSMRLAVD+WGR+E TEPA  TVKEDNNLSL+
Sbjct: 113 FTARNDQVELMKPGATVNLRNAKIDMFKGSMRLAVDKWGRIEATEPADITVKEDNNLSLV 172

Query: 130 EYELVNVVE 138
           EYELVNVVE
Sbjct: 173 EYELVNVVE 181

The following BLAST results are available for this feature:

BLAST of MS000888 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131585.1	8.5e-69	100.00	uncharacterized protein At4g28440-like [Momordica charantia]	[more]
XP_022951207.1	1.6e-67	97.79	uncharacterized protein At4g28440-like [Cucurbita moschata] >XP_023001948.1 unch...	[more]
XP_004142984.1	4.7e-67	97.06	uncharacterized protein At4g28440 [Cucumis sativus] >XP_008444318.1 PREDICTED: u...	[more]
XP_038883981.1	6.1e-67	96.32	uncharacterized protein At4g28440 [Benincasa hispida]	[more]
XP_022961781.1	8.8e-66	95.59	uncharacterized protein At4g28440-like [Cucurbita moschata] >XP_022961782.1 unch...	[more]

BLAST of MS000888 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49453	2.6e-44	67.42	Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 P...	[more]

BLAST of MS000888 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BQ40	4.1e-69	100.00	uncharacterized protein At4g28440-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1KS21	7.8e-68	97.79	uncharacterized protein At4g28440-like OS=Cucurbita maxima OX=3661 GN=LOC1114959...	[more]
A0A6J1GH14	7.8e-68	97.79	uncharacterized protein At4g28440-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A1S3BA24	2.3e-67	97.06	uncharacterized protein At4g28440 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A5A7V0K6	2.3e-67	97.06	Nucleic acid-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]

BLAST of MS000888 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G23750.1	1.6e-60	81.02	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G10590.3	4.0e-56	78.99	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G10590.1	5.2e-56	79.56	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G10590.2	5.2e-56	79.56	Nucleic acid-binding, OB-fold-like protein	[more]
AT2G33845.1	2.8e-49	74.42	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 24..127 e-value: 6.7E-44 score: 150.3
None	No IPR available	PANTHER	PTHR31472:SF28	BNAA07G09820D PROTEIN	coord: 2..137
None	No IPR available	PANTHER	PTHR31472	OS05G0244600 PROTEIN	coord: 2..137
None	No IPR available	CDD	cd04491	SoSSB_OBF	coord: 28..111 e-value: 3.00756E-16 score: 66.8777
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 7..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000888.1	MS000888.1	mRNA