MS000886 (gene) Bitter gourd (TR) v1

Overview


Name	MS000886
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein SMG7
Location	scaffold36: 64592 .. 64785 (+)
RNA-Seq Expression	MS000886
Synteny	MS000886

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AACTGTCATAGTTATTTTCAATTGTCTAAGACTGCTACAAACTGTGCGGTAAAAGAATCACCTATTCGATTTAGCAGAAAAGAAGTAAAGGAGAAGTAAAACTTGCAAGTAAAGATTCTAGAATTGAACTCCCAAAGAAGAGTGCATTATCTCCTCATGAGAAATTTAAATCCTTTTGCATTAGAAATATTAGA

mRNA sequence

AACTGTCATAGTTATTTTCAATTGTCTAAGACTGCTACAAACTGTGCGGTAAAAGAATCACCTATTCGATTTAGCAGAAAAAGTAAAGGAGAAGTAAAACTTGCAAGTAAAGATTCTAGAATTGAACTCCCAAAGAAGAGTGCATTATCTCCTCATGAGAAATTTAAATCCTTTTGCATTAGAAATATTAGA

Coding sequence (CDS)

AACTGTCATAGTTATTTTCAATTGTCTAAGACTGCTACAAACTGTGCGGTAAAAGAATCACCTATTCGATTTAGCAGAAAAAGTAAAGGAGAAGTAAAACTTGCAAGTAAAGATTCTAGAATTGAACTCCCAAAGAAGAGTGCATTATCTCCTCATGAGAAATTTAAATCCTTTTGCATTAGAAATATTAGA

Protein sequence

NCHSYFQLSKTATNCAVKESPIRFSRKSKGEVKLASKDSRIELPKKSALSPHEKFKSFCIRNIR

Homology

[Close]

BLAST of MS000886 vs. NCBI nr
Match: XP_022153222.1 (protein SMG7 [Momordica charantia])

HSP 1 Score: 81.6 bits (200), Expect = 2.6e-12
Identity = 45/65 (69.23%), Postives = 50/65 (76.92%), Query Frame = 0


Query: 1   NCHSYFQLSKTATNCAVKESPIRFSRKS-KGEVKLASKDSRIELPKKSALSPHEKFKSFC 60
           N  SY QLS TA N  VKESP+RFS K  KGEVKLA+KDS  E PK+SALSPHE F+SFC
Sbjct: 272 NRQSYAQLSGTAKNSVVKESPVRFSGKGRKGEVKLATKDSSTEPPKESALSPHETFRSFC 331

Query: 61  IRNIR 65
           IR +R
Sbjct: 332 IRFVR 336

[Close]

BLAST of MS000886 vs. NCBI nr
Match: KAG7022136.1 (Protein SMG7 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 74.3 bits (181), Expect = 4.2e-10
Identity = 43/65 (66.15%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 1  NCHSYFQLSKTATNCAVKESPIRFSRKS-KGEVKLASKDSRIELPKKSALSPHEKFKSFC 60
          N  SY QLS  A    VKESPIRFS K  KGEVKLA+KDS  E PK+S LSP E FKSFC
Sbjct: 33 NRQSYSQLSGAAKTSVVKESPIRFSGKGRKGEVKLATKDSSAEPPKESVLSPQEPFKSFC 92

Query: 61 IRNIR 65
          IR +R
Sbjct: 93 IRFVR 97

[Close]

BLAST of MS000886 vs. NCBI nr
Match: XP_022930346.1 (protein SMG7-like [Cucurbita moschata])

HSP 1 Score: 74.3 bits (181), Expect = 4.2e-10
Identity = 43/65 (66.15%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 1   NCHSYFQLSKTATNCAVKESPIRFSRKS-KGEVKLASKDSRIELPKKSALSPHEKFKSFC 60
           N  SY QLS  A    VKESPIRFS K  KGEVKLA+KDS  E PK+S LSP E FKSFC
Sbjct: 263 NRQSYSQLSGAAKTSVVKESPIRFSGKGRKGEVKLATKDSSAEPPKESVLSPQEPFKSFC 322

Query: 61  IRNIR 65
           IR +R
Sbjct: 323 IRFVR 327

[Close]

BLAST of MS000886 vs. NCBI nr
Match: KAG6588223.1 (Protein SMG7, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 74.3 bits (181), Expect = 4.2e-10
Identity = 43/65 (66.15%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 1   NCHSYFQLSKTATNCAVKESPIRFSRKS-KGEVKLASKDSRIELPKKSALSPHEKFKSFC 60
           N  SY QLS  A    VKESPIRFS K  KGEVKLA+KDS  E PK+S LSP E FKSFC
Sbjct: 260 NRQSYSQLSGAAKTSVVKESPIRFSGKGRKGEVKLATKDSSAEPPKESVLSPQEPFKSFC 319

Query: 61  IRNIR 65
           IR +R
Sbjct: 320 IRFVR 324

[Close]

BLAST of MS000886 vs. NCBI nr
Match: XP_023531845.1 (protein SMG7-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 73.9 bits (180), Expect = 5.5e-10
Identity = 43/65 (66.15%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 1   NCHSYFQLSKTATNCAVKESPIRFSRKS-KGEVKLASKDSRIELPKKSALSPHEKFKSFC 60
           N  SY QLS  A    VKESPIRFS K  KGEVKLA+KDS  E PK+S LSP E FKSFC
Sbjct: 263 NRQSYSQLSGAAKASVVKESPIRFSGKGRKGEVKLATKDSNAEPPKESVLSPQEPFKSFC 322

Query: 61  IRNIR 65
           IR +R
Sbjct: 323 IRFVR 327

[Close]

BLAST of MS000886 vs. ExPASy TrEMBL
Match: A0A6J1DIC1 (protein SMG7 OS=Momordica charantia OX=3673 GN=LOC111020767 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.3e-12
Identity = 45/65 (69.23%), Postives = 50/65 (76.92%), Query Frame = 0


Query: 1   NCHSYFQLSKTATNCAVKESPIRFSRKS-KGEVKLASKDSRIELPKKSALSPHEKFKSFC 60
           N  SY QLS TA N  VKESP+RFS K  KGEVKLA+KDS  E PK+SALSPHE F+SFC
Sbjct: 272 NRQSYAQLSGTAKNSVVKESPVRFSGKGRKGEVKLATKDSSTEPPKESALSPHETFRSFC 331

Query: 61  IRNIR 65
           IR +R
Sbjct: 332 IRFVR 336

[Close]

BLAST of MS000886 vs. ExPASy TrEMBL
Match: A0A6J1EQN9 (protein SMG7-like OS=Cucurbita moschata OX=3662 GN=LOC111436815 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.0e-10
Identity = 43/65 (66.15%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 1   NCHSYFQLSKTATNCAVKESPIRFSRKS-KGEVKLASKDSRIELPKKSALSPHEKFKSFC 60
           N  SY QLS  A    VKESPIRFS K  KGEVKLA+KDS  E PK+S LSP E FKSFC
Sbjct: 263 NRQSYSQLSGAAKTSVVKESPIRFSGKGRKGEVKLATKDSSAEPPKESVLSPQEPFKSFC 322

Query: 61  IRNIR 65
           IR +R
Sbjct: 323 IRFVR 327

[Close]

BLAST of MS000886 vs. ExPASy TrEMBL
Match: A0A6J1H8H3 (protein SMG7-like OS=Cucurbita moschata OX=3662 GN=LOC111461458 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.5e-10
Identity = 42/65 (64.62%), Postives = 48/65 (73.85%), Query Frame = 0


Query: 1   NCHSYFQLSKTATNCAVKESPIRFSRKS-KGEVKLASKDSRIELPKKSALSPHEKFKSFC 60
           N  S+ QLS TA    VKESPIR+S K  KGEVKLA+KDS  E PK+SALSP + FKSFC
Sbjct: 263 NRQSHSQLSGTAKTSVVKESPIRYSGKGRKGEVKLATKDSSTEPPKESALSPQDPFKSFC 322

Query: 61  IRNIR 65
           IR +R
Sbjct: 323 IRLVR 327

[Close]

BLAST of MS000886 vs. ExPASy TrEMBL
Match: A0A6J1KLT5 (protein SMG7-like OS=Cucurbita maxima OX=3661 GN=LOC111496426 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.5e-10
Identity = 42/65 (64.62%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 1   NCHSYFQLSKTATNCAVKESPIRFSRKS-KGEVKLASKDSRIELPKKSALSPHEKFKSFC 60
           N  SY QLS  A    VKE+PIRFS K  KGEVKLA+KDS  E PK+S LSP E FKSFC
Sbjct: 263 NRQSYSQLSGAAKTSVVKETPIRFSGKGRKGEVKLATKDSSAEPPKESVLSPQEPFKSFC 322

Query: 61  IRNIR 65
           IR +R
Sbjct: 323 IRFVR 327

[Close]

BLAST of MS000886 vs. ExPASy TrEMBL
Match: A0A5D3DXN0 (Protein SMG7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G001080 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.9e-10
Identity = 42/65 (64.62%), Postives = 48/65 (73.85%), Query Frame = 0


Query: 1   NCHSYFQLSKTATNCAVKESPIRFSRKS-KGEVKLASKDSRIELPKKSALSPHEKFKSFC 60
           N HS+ QLS TA     KESPIRFS K  KGEVKLA+KDS  E PK+SA+SP + FKSFC
Sbjct: 255 NRHSHSQLSGTAKTPPKKESPIRFSGKGRKGEVKLATKDSSTEPPKESAVSPQDLFKSFC 314

Query: 61  IRNIR 65
           IR +R
Sbjct: 315 IRFVR 319

The following BLAST results are available for this feature:

BLAST of MS000886 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153222.1	2.6e-12	69.23	protein SMG7 [Momordica charantia]	[more]
KAG7022136.1	4.2e-10	66.15	Protein SMG7 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022930346.1	4.2e-10	66.15	protein SMG7-like [Cucurbita moschata]	[more]
KAG6588223.1	4.2e-10	66.15	Protein SMG7, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023531845.1	5.5e-10	66.15	protein SMG7-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS000886 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS000886 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DIC1	1.3e-12	69.23	protein SMG7 OS=Momordica charantia OX=3673 GN=LOC111020767 PE=4 SV=1	[more]
A0A6J1EQN9	2.0e-10	66.15	protein SMG7-like OS=Cucurbita moschata OX=3662 GN=LOC111436815 PE=4 SV=1	[more]
A0A6J1H8H3	3.5e-10	64.62	protein SMG7-like OS=Cucurbita moschata OX=3662 GN=LOC111461458 PE=4 SV=1	[more]
A0A6J1KLT5	4.5e-10	64.62	protein SMG7-like OS=Cucurbita maxima OX=3661 GN=LOC111496426 PE=4 SV=1	[more]
A0A5D3DXN0	5.9e-10	64.62	Protein SMG7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G001080 ...	[more]

BLAST of MS000886 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000886.1	MS000886.1	mRNA