MS000884 (gene) Bitter gourd (TR) v1

Overview


Name	MS000884
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial
Location	scaffold36: 61249 .. 61392 (-)
RNA-Seq Expression	MS000884
Synteny	MS000884

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TATGCGAAATGTGCCTACTCTTTCAGGCTTCCAGTGGAGCTGTCAAGTGTGCAGTCGCTAATGCCACTGCACAGTGTTACTGCTTCTGCCTTATTTACTTCGTTGCTTTCTTTGCATAACAACAGTTGGGGTTGTCTATCTGAA

mRNA sequence

TATGCGAAATGTGCCTACTCTTTCAGGCTTCCAGTGGAGCTGTCAAGTGTGCAGTCGCTAATGCCACTGCACAGTGTTACTGCTTCTGCCTTATTTACTTCGTTGCTTTCTTTGCATAACAACAGTTGGGGTTGTCTATCTGAA

Coding sequence (CDS)

TATGCGAAATGTGCCTACTCTTTCAGGCTTCCAGTGGAGCTGTCAAGTGTGCAGTCGCTAATGCCACTGCACAGTGTTACTGCTTCTGCCTTATTTACTTCGTTGCTTTCTTTGCATAACAACAGTTGGGGTTGTCTATCTGAA

Protein sequence

YAKCAYSFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE

Homology

[Close]

BLAST of MS000884 vs. NCBI nr
Match: XP_038885250.1 (uncharacterized protein LOC120075707 isoform X1 [Benincasa hispida])

HSP 1 Score: 85.9 bits (211), Expect = 1.0e-13
Identity = 44/48 (91.67%), Postives = 44/48 (91.67%), Query Frame = 0


Query: 1   YAKCAYSFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE 49
           YAKC   FRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWG LSE
Sbjct: 86  YAKCRCFFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGYLSE 133

[Close]

BLAST of MS000884 vs. NCBI nr
Match: XP_022996536.1 (uncharacterized protein LOC111491756 isoform X2 [Cucurbita maxima] >XP_023546953.1 uncharacterized protein LOC111805899 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 81.3 bits (199), Expect = 2.6e-12
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 7   SFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE 49
           +FRLPVELSSVQSLMPLHS TASALFTSLLSLHNNSWGCLSE
Sbjct: 61  NFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSE 102

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BLAST of MS000884 vs. NCBI nr
Match: XP_022961783.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita moschata] >KAG6598206.1 hypothetical protein SDJN03_07984, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 81.3 bits (199), Expect = 2.6e-12
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 7   SFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE 49
           +FRLPVELSSVQSLMPLHS TASALFTSLLSLHNNSWGCLSE
Sbjct: 62  NFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSE 103

[Close]

BLAST of MS000884 vs. NCBI nr
Match: KAG7029191.1 (hypothetical protein SDJN02_07528, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 81.3 bits (199), Expect = 2.6e-12
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 7   SFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE 49
           +FRLPVELSSVQSLMPLHS TASALFTSLLSLHNNSWGCLSE
Sbjct: 105 NFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSE 146

[Close]

BLAST of MS000884 vs. NCBI nr
Match: XP_022159141.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Momordica charantia])

HSP 1 Score: 80.5 bits (197), Expect = 4.4e-12
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 7   SFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE 49
           + RLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE
Sbjct: 61  NLRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE 102

[Close]

BLAST of MS000884 vs. ExPASy TrEMBL
Match: A0A6J1K524 (uncharacterized protein LOC111491756 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491756 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-12
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 7   SFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE 49
           +FRLPVELSSVQSLMPLHS TASALFTSLLSLHNNSWGCLSE
Sbjct: 61  NFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSE 102

[Close]

BLAST of MS000884 vs. ExPASy TrEMBL
Match: A0A6J1HCT7 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111462447 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-12
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 7   SFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE 49
           +FRLPVELSSVQSLMPLHS TASALFTSLLSLHNNSWGCLSE
Sbjct: 62  NFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSE 103

[Close]

BLAST of MS000884 vs. ExPASy TrEMBL
Match: A0A6J1E309 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111025568 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.1e-12
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 7   SFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE 49
           + RLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE
Sbjct: 61  NLRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE 102

[Close]

BLAST of MS000884 vs. ExPASy TrEMBL
Match: W9S1U8 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_027782 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.0e-11
Identity = 37/42 (88.10%), Postives = 40/42 (95.24%), Query Frame = 0


Query: 7   SFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE 49
           S RLPVEL+S+QSLMPLHSVTASALFTS+LSLHNN WGCLSE
Sbjct: 59  SSRLPVELASLQSLMPLHSVTASALFTSMLSLHNNKWGCLSE 100

[Close]

BLAST of MS000884 vs. ExPASy TrEMBL
Match: A0A6P4ADM6 (uncharacterized protein LOC107428731 OS=Ziziphus jujuba OX=326968 GN=LOC107428731 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.6e-10
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 9  RLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE 49
          R+PVEL+S+QSLMP+HSVTA+ALFTSLLSLHNN WGCLSE
Sbjct: 60 RIPVELASMQSLMPMHSVTAAALFTSLLSLHNNKWGCLSE 99

[Close]

BLAST of MS000884 vs. TAIR 10
Match: AT1G70350.1 (unknown protein; Has 98 Blast hits to 98 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.9 bits (141), Expect = 1.3e-09
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 9  RLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE 49
          R+PVELS+  SL+PLHSVTASAL TSLLSL N +W CLSE
Sbjct: 60 RVPVELSAGISLIPLHSVTASALLTSLLSLSNQNWSCLSE 99

[Close]

BLAST of MS000884 vs. TAIR 10
Match: AT1G55205.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 137 Blast hits to 137 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 1.1e-05
Identity = 23/42 (54.76%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 7  SFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE 49
          SFRLPVELS   S++PLHS  ASA   S LS+ + SWG + +
Sbjct: 50 SFRLPVELSCCLSMLPLHSAIASARLISSLSVESKSWGLVPQ 91

[Close]

BLAST of MS000884 vs. TAIR 10
Match: AT1G55205.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 1.1e-05
Identity = 23/42 (54.76%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 7  SFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE 49
          SFRLPVELS   S++PLHS  ASA   S LS+ + SWG + +
Sbjct: 50 SFRLPVELSCCLSMLPLHSAIASARLISSLSVESKSWGLVPQ 91

[Close]

BLAST of MS000884 vs. TAIR 10
Match: AT2G20585.1 (nuclear fusion defective 6 )

HSP 1 Score: 41.6 bits (96), Expect = 2.1e-04
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 9  RLPVELS-SVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE 49
          R PVELS  V+SL+P HS TASAL TS LS+   ++G LS+
Sbjct: 54 RNPVELSFCVESLLPYHSATASALMTSKLSISGQTYGWLSD 94

[Close]

BLAST of MS000884 vs. TAIR 10
Match: AT2G20585.2 (nuclear fusion defective 6 )

HSP 1 Score: 41.6 bits (96), Expect = 2.1e-04
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 9  RLPVELS-SVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE 49
          R PVELS  V+SL+P HS TASAL TS LS+   ++G LS+
Sbjct: 54 RNPVELSFCVESLLPYHSATASALMTSKLSISGQTYGWLSD 94

The following BLAST results are available for this feature:

BLAST of MS000884 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885250.1	1.0e-13	91.67	uncharacterized protein LOC120075707 isoform X1 [Benincasa hispida]	[more]
XP_022996536.1	2.6e-12	95.24	uncharacterized protein LOC111491756 isoform X2 [Cucurbita maxima] >XP_023546953...	[more]
XP_022961783.1	2.6e-12	95.24	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita mosch...	[more]
KAG7029191.1	2.6e-12	95.24	hypothetical protein SDJN02_07528, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022159141.1	4.4e-12	95.24	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Momordica chara...	[more]

BLAST of MS000884 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS000884 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K524	1.2e-12	95.24	uncharacterized protein LOC111491756 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1HCT7	1.2e-12	95.24	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Cucurbita mos...	[more]
A0A6J1E309	2.1e-12	95.24	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Momordica cha...	[more]
W9S1U8	4.0e-11	88.10	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_027782 PE=4 SV=1	[more]
A0A6P4ADM6	2.6e-10	85.00	uncharacterized protein LOC107428731 OS=Ziziphus jujuba OX=326968 GN=LOC10742873...	[more]

BLAST of MS000884 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G70350.1	1.3e-09	75.00	unknown protein; Has 98 Blast hits to 98 proteins in 11 species: Archae - 0; Bac...	[more]
AT1G55205.1	1.1e-05	54.76	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G55205.2	1.1e-05	54.76	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G20585.1	2.1e-04	58.54	nuclear fusion defective 6	[more]
AT2G20585.2	2.1e-04	58.54	nuclear fusion defective 6	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33156:SF2	OS01G0738000 PROTEIN	coord: 6..48
IPR043459	NFD6/NOXY2-like	PANTHER	PTHR33156	OS02G0230000 PROTEIN	coord: 6..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000884.1	MS000884.1	mRNA