MS000861 (gene) Bitter gourd (TR) v1

Overview
NameMS000861
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPMR5N domain-containing protein
Locationscaffold650: 294981 .. 295151 (-)
RNA-Seq ExpressionMS000861
SyntenyMS000861
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AACCAGGAAGATACTAGATGGTGGACTCTTGATAGCAGTGGATGTTTCTCTGTTAGTTCTCTAATCCTGGCCATCTATATGAATCAAGTGCCTTCTGAACCTGTGTTGATTGATATTATTTGGAAGGCTAAAATGCCTAAAAAGGTGAAAGGTTTCCTTTGGGTTTTCATT

mRNA sequence

AACCAGGAAGATACTAGATGGTGGACTCTTGATAGCAGTGGATGTTTCTCTGTTAGTTCTCTAATCCTGGCCATCTATATGAATCAAGTGCCTTCTGAACCTGTGTTGATTGATATTATTTGGAAGGCTAAAATGCCTAAAAAGGTGAAAGGTTTCCTTTGGGTTTTCATT

Coding sequence (CDS)

AACCAGGAAGATACTAGATGGTGGACTCTTGATAGCAGTGGATGTTTCTCTGTTAGTTCTCTAATCCTGGCCATCTATATGAATCAAGTGCCTTCTGAACCTGTGTTGATTGATATTATTTGGAAGGCTAAAATGCCTAAAAAGGTGAAAGGTTTCCTTTGGGTTTTCATT

Protein sequence

NQEDTRWWTLDSSGCFSVSSLILAIYMNQVPSEPVLIDIIWKAKMPKKVKGFLWVFI
Homology
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BLAST of MS000861 vs. ExPASy TrEMBL
Match: J3MD68 (PMR5N domain-containing protein OS=Oryza brachyantha OX=4533 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.3e-04
Identity = 25/54 (46.30%), Postives = 34/54 (62.96%), Query Frame = 0 

Query: 2   QEDTRWWTLDSSGCFSVSSLILAI-YMNQVPSEPVLIDIIWKAKMPKKVKGFLW 55
           Q DT WW    +GCFSV+S+  AI Y   VP +    D+IWK ++P K+K F+W
Sbjct: 365 QNDTFWWEAQKNGCFSVNSMYKAIMYREVVPKK----DMIWKLRIPLKIKIFMW 414

The following BLAST results are available for this feature:
BLAST of MS000861 vs.
Match NameE-valueIdentityDescription
BLAST of MS000861 vs.
Match NameE-valueIdentityDescription
BLAST of MS000861 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
J3MD684.3e-0446.30PMR5N domain-containing protein OS=Oryza brachyantha OX=4533 PE=3 SV=1[more]
BLAST of MS000861 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS000861.1MS000861.1mRNA