MS000859 (gene) Bitter gourd (TR) v1

Overview
NameMS000859
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Locationscaffold650: 258195 .. 258338 (+)
RNA-Seq ExpressionMS000859
SyntenyMS000859
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTGTTGGTAGCACTTCTTTGAAACAAATTTGGGAGACATTTGAGAGGCATTATTCTTCCAGTTCTCGAACGAACATCGTCAACCTCAAGTCTGACCTTCATTCTATGTCCAAGAAGTCGGCTGCATCTTTTGATGATTATGTG

mRNA sequence

GTTGTTGGTAGCACTTCTTTGAAACAAATTTGGGAGACATTTGAGAGGCATTATTCTTCCAGTTCTCGAACGAACATCGTCAACCTCAAGTCTGACCTTCATTCTATGTCCAAGAAGTCGGCTGCATCTTTTGATGATTATGTG

Coding sequence (CDS)

GTTGTTGGTAGCACTTCTTTGAAACAAATTTGGGAGACATTTGAGAGGCATTATTCTTCCAGTTCTCGAACGAACATCGTCAACCTCAAGTCTGACCTTCATTCTATGTCCAAGAAGTCGGCTGCATCTTTTGATGATTATGTG

Protein sequence

VVGSTSLKQIWETFERHYSSSSRTNIVNLKSDLHSMSKKSAASFDDYV
Homology
BLAST of MS000859 vs. NCBI nr
Match: XP_022157455.1 (uncharacterized protein LOC111024149 [Momordica charantia])

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-09
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 0

Query: 1  VVGSTSLKQIWETFERHYSSSSRTNIVNLKSDLHSMSKKSAASFDDYV 49
          VVGSTS K+IW+T E+HYSSSSRTN+VNLKSDL S+SKK     DDYV
Sbjct: 16 VVGSTSSKEIWDTLEKHYSSSSRTNVVNLKSDLQSISKKVGECIDDYV 63

BLAST of MS000859 vs. NCBI nr
Match: XP_022158689.1 (uncharacterized protein LOC111025150 [Momordica charantia])

HSP 1 Score: 64.3 bits (155), Expect = 3.3e-07
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 0

Query: 1   VVGSTSLKQIWETFERHYSSSSRTNIVNLKSDLHSMSKKSAASFDDYV 49
           VVG  S +Q+W+T  +HYSSSSRTN+VNLKSDL S+SKK   S D YV
Sbjct: 109 VVGCDSSQQVWQTLVKHYSSSSRTNVVNLKSDLQSISKKPGXSIDXYV 156

BLAST of MS000859 vs. NCBI nr
Match: XP_022150845.1 (uncharacterized protein LOC111018892 [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 2.1e-06
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 0

Query: 1   VVGSTSLKQIWETFERHYSSSSRTNIVNLKSDLHSMSKKSAASFDDYV 49
           VV S + KQ+WE  E+HYSS+SRTN+VNLKSDL S+ KK+  S D YV
Sbjct: 136 VVRSGTSKQVWEVLEKHYSSNSRTNVVNLKSDLQSIVKKTEESIDAYV 183

BLAST of MS000859 vs. NCBI nr
Match: KAG6588985.1 (Retrovirus-related Pol polyprotein from transposon RE1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.1 bits (144), Expect = 6.1e-06
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 0

Query: 1   VVGSTSLKQIWETFERHYSSSSRTNIVNLKSDLHSMSKKSAASFDDYV 49
           VVGST+ KQ+W    + YSSSSR+N+VNLKSDL ++SKKS  S D Y+
Sbjct: 98  VVGSTTSKQVWNVLAKLYSSSSRSNVVNLKSDLQTISKKSDESIDAYI 145

BLAST of MS000859 vs. NCBI nr
Match: KAG7015254.1 (hypothetical protein SDJN02_22888, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 60.1 bits (144), Expect = 6.1e-06
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 0

Query: 1   VVGSTSLKQIWETFERHYSSSSRTNIVNLKSDLHSMSKKSAASFDDYV 49
           VVGST+ KQ+W    + YSSSSR+N+VNLKSDL ++SKKS  S D Y+
Sbjct: 98  VVGSTTSKQVWNVLAKLYSSSSRSNVVNLKSDLQTISKKSDESIDAYI 145

BLAST of MS000859 vs. ExPASy TrEMBL
Match: A0A6J1DT57 (uncharacterized protein LOC111024149 OS=Momordica charantia OX=3673 GN=LOC111024149 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.8e-10
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 0

Query: 1  VVGSTSLKQIWETFERHYSSSSRTNIVNLKSDLHSMSKKSAASFDDYV 49
          VVGSTS K+IW+T E+HYSSSSRTN+VNLKSDL S+SKK     DDYV
Sbjct: 16 VVGSTSSKEIWDTLEKHYSSSSRTNVVNLKSDLQSISKKVGECIDDYV 63

BLAST of MS000859 vs. ExPASy TrEMBL
Match: A0A6J1E049 (uncharacterized protein LOC111025150 OS=Momordica charantia OX=3673 GN=LOC111025150 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 0

Query: 1   VVGSTSLKQIWETFERHYSSSSRTNIVNLKSDLHSMSKKSAASFDDYV 49
           VVG  S +Q+W+T  +HYSSSSRTN+VNLKSDL S+SKK   S D YV
Sbjct: 109 VVGCDSSQQVWQTLVKHYSSSSRTNVVNLKSDLQSISKKPGXSIDXYV 156

BLAST of MS000859 vs. ExPASy TrEMBL
Match: A0A6J1D9L6 (uncharacterized protein LOC111018892 OS=Momordica charantia OX=3673 GN=LOC111018892 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.0e-06
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 0

Query: 1   VVGSTSLKQIWETFERHYSSSSRTNIVNLKSDLHSMSKKSAASFDDYV 49
           VV S + KQ+WE  E+HYSS+SRTN+VNLKSDL S+ KK+  S D YV
Sbjct: 136 VVRSGTSKQVWEVLEKHYSSNSRTNVVNLKSDLQSIVKKTEESIDAYV 183

BLAST of MS000859 vs. ExPASy TrEMBL
Match: A0A5D3D3T6 (Retrotran_gag_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002980 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.9e-05
Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 0

Query: 1   VVGSTSLKQIWETFERHYSSSSRTNIVNLKSDLHSMSKK 40
           VVG  S  Q+W+T ERHYSS++RTNIVNLKSDL  +SKK
Sbjct: 122 VVGCKSSSQVWKTLERHYSSNTRTNIVNLKSDLQQISKK 160

BLAST of MS000859 vs. ExPASy TrEMBL
Match: A0A6J1DYF1 (uncharacterized protein LOC111025709 OS=Momordica charantia OX=3673 GN=LOC111025709 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.3e-05
Identity = 27/48 (56.25%), Postives = 37/48 (77.08%), Query Frame = 0

Query: 1   VVGSTSLKQIWETFERHYSSSSRTNIVNLKSDLHSMSKKSAASFDDYV 49
           +VG  S +Q+W+T  ++YSSSSRTN+VNLKS+L S+SKK   S D Y+
Sbjct: 74  MVGCDSSQQVWQTLVKYYSSSSRTNVVNLKSNLQSISKKPGESIDLYM 121

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022157455.11.2e-0972.92uncharacterized protein LOC111024149 [Momordica charantia][more]
XP_022158689.13.3e-0764.58uncharacterized protein LOC111025150 [Momordica charantia][more]
XP_022150845.12.1e-0662.50uncharacterized protein LOC111018892 [Momordica charantia][more]
KAG6588985.16.1e-0660.42Retrovirus-related Pol polyprotein from transposon RE1, partial [Cucurbita argyr... [more]
KAG7015254.16.1e-0660.42hypothetical protein SDJN02_22888, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DT575.8e-1072.92uncharacterized protein LOC111024149 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1E0491.6e-0764.58uncharacterized protein LOC111025150 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1D9L61.0e-0662.50uncharacterized protein LOC111018892 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A5D3D3T61.9e-0569.23Retrotran_gag_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695... [more]
A0A6J1DYF13.3e-0556.25uncharacterized protein LOC111025709 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS000859.1MS000859.1mRNA