MS000734 (gene) Bitter gourd (TR) v1

Overview


Name	MS000734
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	HTH myb-type domain-containing protein
Location	scaffold1574: 1843 .. 3295 (+)
RNA-Seq Expression	MS000734
Synteny	MS000734

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATCCTTTTCATCGGAGAGAATCGGAGTTCGACAGTACAATAAATCGGAACTTCCGCGGCTGCGGTGGACGCCGGAGCTTCATCGCTACTTCGTCCAGACCGTCGAGATCCTTGGAGGAAGAAATCGTAAGTTTCCGCCAAGTTTTTGCTTGTTCGTTTATTGTTATGGCGTTCTGGCTCTCTTTTCTGTCCGTACTGGAATTTTTTCTCAGAAACTGTTTCAGAGAGAGCGAGAGAGAGCGCTGTGTGTTATCTGTCCGTACTGGAATTTTTTATTGCTTTCTTCTGAAAACTGACTTGTTGCAGAAGCAACGCCGAAAAGAATACTGCAAATGATGGGAGTGAAAGGACTGAAGATTTCGCACATAAAAAGCCACCTACAGGTATACTTTTAATAAACGCAAATGTTCGTCGCTATCGTTGAGTTGAGTTGAGTGATCAATTTTTGTATATTACATACATTCAAAAATCAAAAATCAAAAATCAAAAATCAAAGTTCTTCAAACTTTTTATATACAGTACAGTTTTGGTCCGATCATACTTGATTCAAAACTCAGATGGTGATTCCAAATATATATAAACGAACTAGTCTCTTGTTTCACTGCAAGTTTTCGGCCGGATTTTTCTAATTTACAATTTGAGTTTGTAATTTGTAGAACTTGTTAATTAGAGTATGCTAATCTCATAAACCTACCACAAAGCCACATCAAAAACCTAGAGATGAACACATTTTTATAGCTCGATCTATATAATCCAAACATCTTTATTGCGTAAAATTCGAATTTTCAAACGCCTCCTAATTTGGTAAAATTTTCGAATTTTCAAACGCCTCCTAATTATACAAACTAAATTTGGTACAATTTTAAAAGAATTTTCTTAACCAGAAAAAGACAAGCCATGAATAAAATTAGCAAGAAATTTATTCATATATTGGAATCAAGGCAGCATATACACTCTCTCTCCCTCTCAATGTGAATATGCATATCAAGCCAAACAGAAAAGATGATAGAATACTAGTAACTTCCCAGTTAGGACATTGTTTAATTAAAGAAGCTTTTTACAAATTAAAAAAGAATTTAGTTTTTGGTTAGGTACATTCCTTACCGCAGGAGAGAAAAGTAACCTTTAATTCAACCTTTAATTCAATTAAATATGAAATTAAAGACAAAGAAGCAGAATAATTATGAGTTCTTGCATGGCGACGCTACTCATTTTTTATTCCATTTATATTCTTGTAGCCATTATACAGTGAAGCCCAACATATATTGTATTCTAACAAAAAAAAAATTGCGTTTTTTTCAATGATTTATTTATTTATTTTTGCAGATGTATAGGAGTATGGAATTAGAGCGTGGCAGCAGTTGCAAGCATGTAGTAACGAGACAAGCCATGAAACAGCCCAGAAAAAGAACATCGCACTCATCTGACATCAGAGTCCTCCTCTCTTCA

mRNA sequence

ATGAAATCCTTTTCATCGGAGAGAATCGGAGTTCGACAGTACAATAAATCGGAACTTCCGCGGCTGCGGTGGACGCCGGAGCTTCATCGCTACTTCGTCCAGACCGTCGAGATCCTTGGAGGAAGAAATCAAGCAACGCCGAAAAGAATACTGCAAATGATGGGAGTGAAAGGACTGAAGATTTCGCACATAAAAAGCCACCTACAGATGTATAGGAGTATGGAATTAGAGCGTGGCAGCAGTTGCAAGCATGTAGTAACGAGACAAGCCATGAAACAGCCCAGAAAAAGAACATCGCACTCATCTGACATCAGAGTCCTCCTCTCTTCA

Coding sequence (CDS)

ATGAAATCCTTTTCATCGGAGAGAATCGGAGTTCGACAGTACAATAAATCGGAACTTCCGCGGCTGCGGTGGACGCCGGAGCTTCATCGCTACTTCGTCCAGACCGTCGAGATCCTTGGAGGAAGAAATCAAGCAACGCCGAAAAGAATACTGCAAATGATGGGAGTGAAAGGACTGAAGATTTCGCACATAAAAAGCCACCTACAGATGTATAGGAGTATGGAATTAGAGCGTGGCAGCAGTTGCAAGCATGTAGTAACGAGACAAGCCATGAAACAGCCCAGAAAAAGAACATCGCACTCATCTGACATCAGAGTCCTCCTCTCTTCA

Protein sequence

MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSMELERGSSCKHVVTRQAMKQPRKRTSHSSDIRVLLSS

Homology

[Close]

BLAST of MS000734 vs. NCBI nr
Match: XP_022141381.1 (probable transcription factor KAN3 [Momordica charantia])

HSP 1 Score: 211.5 bits (537), Expect = 3.8e-51
Identity = 107/110 (97.27%), Postives = 108/110 (98.18%), Query Frame = 0


Query: 1   MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLK 60
           MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQ+MGVKGLK
Sbjct: 16  MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQIMGVKGLK 75

Query: 61  ISHIKSHLQMYRSMELERGSSCKHVVTRQAMKQPRKRTSHSSDIRVLLSS 111
           ISHIKSHLQMYRS ELERGSSCKHVVTRQAMKQPRK TSHSSDIRVLLSS
Sbjct: 76  ISHIKSHLQMYRSTELERGSSCKHVVTRQAMKQPRKGTSHSSDIRVLLSS 125

[Close]

BLAST of MS000734 vs. NCBI nr
Match: XP_022982449.1 (probable transcription factor KAN3 [Cucurbita maxima])

HSP 1 Score: 190.7 bits (483), Expect = 6.9e-45
Identity = 93/110 (84.55%), Postives = 103/110 (93.64%), Query Frame = 0


Query: 1   MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLK 60
           MKS SSERIGVRQYNKSELPRLRWTP LHRYFVQTVE+LGGRNQATPKRILQMMGVKGLK
Sbjct: 1   MKSCSSERIGVRQYNKSELPRLRWTPALHRYFVQTVEVLGGRNQATPKRILQMMGVKGLK 60

Query: 61  ISHIKSHLQMYRSMELERGSSCKHVVTRQAMKQPRKRTSHSSDIRVLLSS 111
           ISHIKSHLQMYRSM+LE GSSC+HV+ +QAM+Q R+RT HSSDI++ +SS
Sbjct: 61  ISHIKSHLQMYRSMKLEHGSSCEHVMLKQAMEQTRRRTLHSSDIKIFMSS 110

[Close]

BLAST of MS000734 vs. NCBI nr
Match: XP_023525384.1 (probable transcription factor KAN3 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 188.3 bits (477), Expect = 3.4e-44
Identity = 92/110 (83.64%), Postives = 102/110 (92.73%), Query Frame = 0


Query: 1   MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLK 60
           MKS SSERIGVRQYNKSELPRLRWTP LHRYFVQTVE+LGGRNQATPKRILQMMGVKGLK
Sbjct: 1   MKSCSSERIGVRQYNKSELPRLRWTPALHRYFVQTVEVLGGRNQATPKRILQMMGVKGLK 60

Query: 61  ISHIKSHLQMYRSMELERGSSCKHVVTRQAMKQPRKRTSHSSDIRVLLSS 111
           ISHIKSHLQMYRSM+ E GSSC+HV+ +QAM+Q R+RT HSSDI++ +SS
Sbjct: 61  ISHIKSHLQMYRSMKSEHGSSCEHVMMKQAMEQTRRRTLHSSDIKIFMSS 110

[Close]

BLAST of MS000734 vs. NCBI nr
Match: KAG6607985.1 (putative Myb family transcription factor, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037502.1 putative Myb family transcription factor [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.3 bits (477), Expect = 3.4e-44
Identity = 92/110 (83.64%), Postives = 102/110 (92.73%), Query Frame = 0


Query: 1   MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLK 60
           MKS SSERIGVRQYNKSELPRLRWTP LHRYFVQTVE+LGGRNQATPKRILQMMGVKGLK
Sbjct: 1   MKSCSSERIGVRQYNKSELPRLRWTPALHRYFVQTVEVLGGRNQATPKRILQMMGVKGLK 60

Query: 61  ISHIKSHLQMYRSMELERGSSCKHVVTRQAMKQPRKRTSHSSDIRVLLSS 111
           ISHIKSHLQMYRSM+ E GSSC+HV+ +QAM+Q R+RT HSSDI++ +SS
Sbjct: 61  ISHIKSHLQMYRSMKSEHGSSCEHVMMKQAMEQTRRRTLHSSDIKIFMSS 110

[Close]

BLAST of MS000734 vs. NCBI nr
Match: XP_038899444.1 (myb family transcription factor MPH1-like [Benincasa hispida])

HSP 1 Score: 184.5 bits (467), Expect = 4.9e-43
Identity = 93/110 (84.55%), Postives = 99/110 (90.00%), Query Frame = 0


Query: 1   MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLK 60
           MKS SSERIGVRQYNKSELPRLRWTPELHRYFV+TVEILGGRNQATPKRILQMMGVKGLK
Sbjct: 1   MKSNSSERIGVRQYNKSELPRLRWTPELHRYFVRTVEILGGRNQATPKRILQMMGVKGLK 60

Query: 61  ISHIKSHLQMYRSMELERGSSCKHVVTRQAMKQPRKRTSHSSDIRVLLSS 111
           ISHIKSHLQMYRS++LE GS C+ VV  Q MKQ R+RT HSSDI+  LSS
Sbjct: 61  ISHIKSHLQMYRSIKLENGSKCEDVVMSQGMKQTRRRTLHSSDIKTFLSS 110

[Close]

BLAST of MS000734 vs. ExPASy Swiss-Prot
Match: A0A0P0X0C0 (Myb family transcription factor MPH1 OS=Oryza sativa subsp. japonica OX=39947 GN=MPH1 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.1e-24
Identity = 55/85 (64.71%), Postives = 68/85 (80.00%), Query Frame = 0


Query: 7  ERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKS 66
          ER GVRQYN+SE+PR+RWT E+HR FV+ VE LGG+++ATPKRILQ+MGVKG+ ISHIKS
Sbjct: 5  ERRGVRQYNRSEVPRMRWTEEMHRQFVEAVECLGGQDEATPKRILQLMGVKGVSISHIKS 64

Query: 67 HLQMYRSMELERGSSCKHVVTRQAM 92
          HLQMYRS      S+  H V+ Q +
Sbjct: 65 HLQMYRS----GSSNSNHPVSLQKL 85

[Close]

BLAST of MS000734 vs. ExPASy Swiss-Prot
Match: A3AWH5 (Myb family transcription factor MOF1 OS=Oryza sativa subsp. japonica OX=39947 GN=MOF1 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 9.4e-21
Identity = 54/91 (59.34%), Postives = 67/91 (73.63%), Query Frame = 0


Query: 11  VRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQM 70
           VRQY +S++PRLRWT ELH  FVQ +E LGG+++ATPK ILQ+MGVKGL ISH+KSHLQM
Sbjct: 14  VRQYIRSKVPRLRWTGELHCSFVQAIEFLGGQDKATPKLILQLMGVKGLTISHVKSHLQM 73

Query: 71  YRSMELERGSSCKHVVTRQAMKQPRKRTSHS 102
           YR   L  GS   H   R++  QP+ +  HS
Sbjct: 74  YRCSRL--GS---HGTGRRSEMQPQLQRKHS 99

[Close]

BLAST of MS000734 vs. ExPASy Swiss-Prot
Match: Q700D9 (Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana OX=3702 GN=At1g14600 PE=2 SV=2)

HSP 1 Score: 95.1 bits (235), Expect = 5.2e-19
Identity = 43/67 (64.18%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 10 GVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ 69
          GVR Y +S +PRLRWTPELHR FV  V++LGG+ +ATPK +L++M VKGL ISH+KSHLQ
Sbjct: 14 GVRPYVRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQ 73

Query: 70 MYRSMEL 77
          MYR   +
Sbjct: 74 MYRGSRI 80

[Close]

BLAST of MS000734 vs. ExPASy Swiss-Prot
Match: Q9FJV5 (Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.0e-14
Identity = 39/90 (43.33%), Postives = 64/90 (71.11%), Query Frame = 0


Query: 2   KSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKI 61
           K  SS  +G+++  ++  PR+RWT  LH +FV  V++LGG  +ATPK +L++M VK L +
Sbjct: 90  KRSSSSMVGLKRSIRA--PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTL 149

Query: 62  SHIKSHLQMYRSME-LERGSSCKHVVTRQA 91
           +H+KSHLQMYR+++  ++GS  +  V ++A
Sbjct: 150 AHVKSHLQMYRTVKCTDKGSPGEGKVEKEA 177

[Close]

BLAST of MS000734 vs. ExPASy Swiss-Prot
Match: Q93WJ9 (Transcription repressor KAN1 OS=Arabidopsis thaliana OX=3702 GN=KAN1 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.5e-13
Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 0


Query: 20  PRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSME 76
           PR+RWT  LH  FV  VE+LGG  +ATPK +L++M VK L ++H+KSHLQMYR+++
Sbjct: 220 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK 275

[Close]

BLAST of MS000734 vs. ExPASy TrEMBL
Match: A0A6J1CJ05 (probable transcription factor KAN3 OS=Momordica charantia OX=3673 GN=LOC111011791 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.8e-51
Identity = 107/110 (97.27%), Postives = 108/110 (98.18%), Query Frame = 0


Query: 1   MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLK 60
           MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQ+MGVKGLK
Sbjct: 16  MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQIMGVKGLK 75

Query: 61  ISHIKSHLQMYRSMELERGSSCKHVVTRQAMKQPRKRTSHSSDIRVLLSS 111
           ISHIKSHLQMYRS ELERGSSCKHVVTRQAMKQPRK TSHSSDIRVLLSS
Sbjct: 76  ISHIKSHLQMYRSTELERGSSCKHVVTRQAMKQPRKGTSHSSDIRVLLSS 125

[Close]

BLAST of MS000734 vs. ExPASy TrEMBL
Match: A0A6J1J4K7 (probable transcription factor KAN3 OS=Cucurbita maxima OX=3661 GN=LOC111481270 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.3e-45
Identity = 93/110 (84.55%), Postives = 103/110 (93.64%), Query Frame = 0


Query: 1   MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLK 60
           MKS SSERIGVRQYNKSELPRLRWTP LHRYFVQTVE+LGGRNQATPKRILQMMGVKGLK
Sbjct: 1   MKSCSSERIGVRQYNKSELPRLRWTPALHRYFVQTVEVLGGRNQATPKRILQMMGVKGLK 60

Query: 61  ISHIKSHLQMYRSMELERGSSCKHVVTRQAMKQPRKRTSHSSDIRVLLSS 111
           ISHIKSHLQMYRSM+LE GSSC+HV+ +QAM+Q R+RT HSSDI++ +SS
Sbjct: 61  ISHIKSHLQMYRSMKLEHGSSCEHVMLKQAMEQTRRRTLHSSDIKIFMSS 110

[Close]

BLAST of MS000734 vs. ExPASy TrEMBL
Match: A0A6J1FNB8 (probable transcription factor KAN4 OS=Cucurbita moschata OX=3662 GN=LOC111445813 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.3e-43
Identity = 92/110 (83.64%), Postives = 101/110 (91.82%), Query Frame = 0


Query: 1   MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLK 60
           MKS SSERIGVRQYNKSELPRLRWTP LHRYFVQTVE+LGGRNQATPKRILQMMGVKGLK
Sbjct: 1   MKSCSSERIGVRQYNKSELPRLRWTPALHRYFVQTVEVLGGRNQATPKRILQMMGVKGLK 60

Query: 61  ISHIKSHLQMYRSMELERGSSCKHVVTRQAMKQPRKRTSHSSDIRVLLSS 111
           ISHIKSHLQMYRSM+ E GSSC+HV+ +QAM+Q R RT HSSDI++ +SS
Sbjct: 61  ISHIKSHLQMYRSMKSEHGSSCEHVMMKQAMEQTR-RTLHSSDIKIFMSS 109

[Close]

BLAST of MS000734 vs. ExPASy TrEMBL
Match: A0A6J1IGV1 (putative Myb family transcription factor At1g14600 OS=Cucurbita maxima OX=3661 GN=LOC111477099 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 5.9e-42
Identity = 94/112 (83.93%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 1   MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLK 60
           MKS SSERIGVR+YNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLK
Sbjct: 1   MKSCSSERIGVRRYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLK 60

Query: 61  ISHIKSHLQMYRSMELERGSSCK--HVVTRQAMKQPRKRTSHSSDIRVLLSS 111
           ISHIKSHLQMYRSM+LE+GSS +   VV +QA KQ R RT HSSDI++ LSS
Sbjct: 61  ISHIKSHLQMYRSMKLEQGSSSRFEDVVLKQATKQTRGRTLHSSDIKIFLSS 112

[Close]

BLAST of MS000734 vs. ExPASy TrEMBL
Match: A0A6J1FFE3 (putative Myb family transcription factor At1g14600 OS=Cucurbita moschata OX=3662 GN=LOC111443450 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.0e-41
Identity = 94/112 (83.93%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 1   MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLK 60
           MKS SSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLK
Sbjct: 1   MKSCSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLK 60

Query: 61  ISHIKSHLQMYRSMELERGSSCK--HVVTRQAMKQPRKRTSHSSDIRVLLSS 111
           ISHIKSHLQMYRSM+LE+GSS +   VV +QA KQ R  T HSSDI++ LSS
Sbjct: 61  ISHIKSHLQMYRSMKLEQGSSSRFEDVVLKQATKQTRGTTLHSSDIKIFLSS 112

[Close]

BLAST of MS000734 vs. TAIR 10
Match: AT2G02060.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 98.6 bits (244), Expect = 3.3e-21
Identity = 52/93 (55.91%), Postives = 66/93 (70.97%), Query Frame = 0


Query: 3   SFSSERI-GVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKI 62
           SF+  +  GVR Y +S +PRLRWTP+LHR FV  VEILGG+++ATPK +L+MM VKGL I
Sbjct: 12  SFNGNKFHGVRPYVRSPVPRLRWTPDLHRCFVHAVEILGGQHRATPKLVLKMMDVKGLTI 71

Query: 63  SHIKSHLQMYR-----SMELERGSSCKHVVTRQ 90
           SH+KSHLQMYR     ++E    SS   +  RQ
Sbjct: 72  SHVKSHLQMYRGGSKLTLEKPEESSSSSIRRRQ 104

[Close]

BLAST of MS000734 vs. TAIR 10
Match: AT2G42660.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 95.9 bits (237), Expect = 2.2e-20
Identity = 44/70 (62.86%), Postives = 57/70 (81.43%), Query Frame = 0


Query: 11  VRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQM 70
           VRQY +S +PRLRWTP+LH  FV+ V+ LGG ++ATPK +L+MM +KGL I+H+KSHLQM
Sbjct: 42  VRQYIRSNMPRLRWTPDLHLSFVRAVQRLGGPDRATPKLVLEMMNLKGLSIAHVKSHLQM 101

Query: 71  YRSMELERGS 81
           YRS +LE  S
Sbjct: 102 YRSKKLEPSS 111

[Close]

BLAST of MS000734 vs. TAIR 10
Match: AT2G40260.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 95.9 bits (237), Expect = 2.2e-20
Identity = 44/67 (65.67%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 11  VRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQM 70
           VR YN+S+ PRLRWTPELH  F+Q VE LGG ++ATPK +LQ+M VKGL I+H+KSHLQM
Sbjct: 74  VRPYNRSKTPRLRWTPELHICFLQAVERLGGPDRATPKLVLQLMNVKGLSIAHVKSHLQM 133

Query: 71  YRSMELE 78
           YRS + +
Sbjct: 134 YRSKKTD 140

[Close]

BLAST of MS000734 vs. TAIR 10
Match: AT1G14600.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 95.1 bits (235), Expect = 3.7e-20
Identity = 43/67 (64.18%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 10 GVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ 69
          GVR Y +S +PRLRWTPELHR FV  V++LGG+ +ATPK +L++M VKGL ISH+KSHLQ
Sbjct: 14 GVRPYVRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQ 73

Query: 70 MYRSMEL 77
          MYR   +
Sbjct: 74 MYRGSRI 80

[Close]

BLAST of MS000734 vs. TAIR 10
Match: AT2G38300.1 (myb-like HTH transcriptional regulator family protein )

HSP 1 Score: 94.4 bits (233), Expect = 6.3e-20
Identity = 42/73 (57.53%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 5   SSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHI 64
           S ++  VR Y +S++PRLRWTP+LH  FV+ VE LGG+ +ATPK + QMM +KGL I+H+
Sbjct: 40  SDKKTKVRPYVRSKVPRLRWTPDLHLRFVRAVERLGGQERATPKLVRQMMNIKGLSIAHV 99

Query: 65  KSHLQMYRSMELE 78
           KSHLQMYRS +++
Sbjct: 100 KSHLQMYRSKKID 112

The following BLAST results are available for this feature:

BLAST of MS000734 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141381.1	3.8e-51	97.27	probable transcription factor KAN3 [Momordica charantia]	[more]
XP_022982449.1	6.9e-45	84.55	probable transcription factor KAN3 [Cucurbita maxima]	[more]
XP_023525384.1	3.4e-44	83.64	probable transcription factor KAN3 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
KAG6607985.1	3.4e-44	83.64	putative Myb family transcription factor, partial [Cucurbita argyrosperma subsp....	[more]
XP_038899444.1	4.9e-43	84.55	myb family transcription factor MPH1-like [Benincasa hispida]	[more]

BLAST of MS000734 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0A0P0X0C0	3.1e-24	64.71	Myb family transcription factor MPH1 OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
A3AWH5	9.4e-21	59.34	Myb family transcription factor MOF1 OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
Q700D9	5.2e-19	64.18	Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana OX=37...	[more]
Q9FJV5	1.0e-14	43.33	Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 ...	[more]
Q93WJ9	2.5e-13	57.14	Transcription repressor KAN1 OS=Arabidopsis thaliana OX=3702 GN=KAN1 PE=1 SV=1	[more]

BLAST of MS000734 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CJ05	1.8e-51	97.27	probable transcription factor KAN3 OS=Momordica charantia OX=3673 GN=LOC11101179...	[more]
A0A6J1J4K7	3.3e-45	84.55	probable transcription factor KAN3 OS=Cucurbita maxima OX=3661 GN=LOC111481270 P...	[more]
A0A6J1FNB8	5.3e-43	83.64	probable transcription factor KAN4 OS=Cucurbita moschata OX=3662 GN=LOC111445813...	[more]
A0A6J1IGV1	5.9e-42	83.93	putative Myb family transcription factor At1g14600 OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1FFE3	1.0e-41	83.93	putative Myb family transcription factor At1g14600 OS=Cucurbita moschata OX=3662...	[more]

BLAST of MS000734 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G02060.1	3.3e-21	55.91	Homeodomain-like superfamily protein	[more]
AT2G42660.1	2.2e-20	62.86	Homeodomain-like superfamily protein	[more]
AT2G40260.1	2.2e-20	65.67	Homeodomain-like superfamily protein	[more]
AT1G14600.1	3.7e-20	64.18	Homeodomain-like superfamily protein	[more]
AT2G38300.1	6.3e-20	57.53	myb-like HTH transcriptional regulator family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 22..72 e-value: 2.3E-7 score: 30.9
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 16..76 score: 11.781286
IPR006447	Myb domain, plants	TIGRFAM	TIGR01557	TIGR01557	coord: 20..73 e-value: 1.0E-22 score: 78.2
None	No IPR available	GENE3D	1.10.10.60		coord: 19..75 e-value: 2.3E-25 score: 90.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..110
None	No IPR available	PANTHER	PTHR31314:SF2	MYB-LIKE HTH TRANSCRIPTIONAL REGULATOR FAMILY PROTEIN	coord: 6..93
IPR044848	PHR1-like	PANTHER	PTHR31314	MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE	coord: 6..93
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 20..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000734.1	MS000734.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity