MS000706 (gene) Bitter gourd (TR) v1

Overview


Name	MS000706
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	pfkB-like carbohydrate kinase family protein
Location	scaffold414: 217918 .. 218234 (+)
RNA-Seq Expression	MS000706
Synteny	MS000706

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GACATGTCTTTATCGCAGTGGCTTATAATGAGATATAGTATTTTTAACTTGGAAGTTATTCAAGCGGCTGTAAAGTTGGCCAAACAAGAGAAAGCTTTTGTGGTATATTCCTTGGCAAACCTCTGTGTGCTTTTTGTTTTGAAGAAGAGACTTTTGTATTATTTTAAAAAATGTGTTTAGAGGTAAATAAAGTAGCTCACATCTCTATCTTTGGCCAGATGGTTTGGGATTTTAGATTACCTCTTCTCCAGCTACTGGAGTTTGGGGATATAGACCTTGGCTTTGCCAACGAGAATGAAGCAAAAGAGTTGATAGGG

mRNA sequence

GACATGTCTTTATCGCAGTGGCTTATAATGAGATATAGTATTTTTAACTTGGAAGTTATTCAAGCGGCTGTAAAGTTGGCCAAACAAGAGAAAGCTTTTGTGGTATATTCCTTGGCAAACCTCTGTATGGTTTGGGATTTTAGATTACCTCTTCTCCAGCTACTGGAGTTTGGGGATATAGACCTTGGCTTTGCCAACGAGAATGAAGCAAAAGAGTTGATAGGG

Coding sequence (CDS)

GACATGTCTTTATCGCAGTGGCTTATAATGAGATATAGTATTTTTAACTTGGAAGTTATTCAAGCGGCTGTAAAGTTGGCCAAACAAGAGAAAGCTTTTGTGGTATATTCCTTGGCAAACCTCTGTATGGTTTGGGATTTTAGATTACCTCTTCTCCAGCTACTGGAGTTTGGGGATATAGACCTTGGCTTTGCCAACGAGAATGAAGCAAAAGAGTTGATAGGG

Protein sequence

DMSLSQWLIMRYSIFNLEVIQAAVKLAKQEKAFVVYSLANLCMVWDFRLPLLQLLEFGDIDLGFANENEAKELIG

Homology

[Close]

BLAST of MS000706 vs. NCBI nr
Match: XP_022144332.1 (uncharacterized protein LOC111014039 [Momordica charantia])

HSP 1 Score: 109.8 bits (273), Expect = 1.1e-20
Identity = 58/75 (77.33%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 1   DMSLSQWLIMRYSIFNLEVIQAAVKLAKQEKAFVVYSLANLCMVWDFRLPLLQLLEFGDI 60
           D   S+WL+MRYSIFNLEVIQAAVK+AKQEK FV   LA+  MV DFRLPLLQLLE GDI
Sbjct: 173 DFKGSKWLVMRYSIFNLEVIQAAVKMAKQEKVFVSLDLASFEMVRDFRLPLLQLLESGDI 232

Query: 61  DLGFANENEAKELIG 76
           DL FANE+EAKELIG
Sbjct: 233 DLCFANEDEAKELIG 247

[Close]

BLAST of MS000706 vs. NCBI nr
Match: XP_038886551.1 (uncharacterized sugar kinase slr0537 [Benincasa hispida])

HSP 1 Score: 107.8 bits (268), Expect = 4.0e-20
Identity = 56/75 (74.67%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 1   DMSLSQWLIMRYSIFNLEVIQAAVKLAKQEKAFVVYSLANLCMVWDFRLPLLQLLEFGDI 60
           D   S+WL+MRYSIFN+EVI+AAVK+AKQEK FV   LA+  MV DFRLPLLQLLE GDI
Sbjct: 172 DFKGSKWLVMRYSIFNMEVIEAAVKMAKQEKVFVSLDLASFEMVRDFRLPLLQLLESGDI 231

Query: 61  DLGFANENEAKELIG 76
           DL FANE+EAKELIG
Sbjct: 232 DLCFANEDEAKELIG 246

[Close]

BLAST of MS000706 vs. NCBI nr
Match: XP_004152687.1 (uncharacterized protein LOC101214597 [Cucumis sativus] >KGN62617.1 hypothetical protein Csa_021844 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 2.0e-19
Identity = 55/74 (74.32%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 1   DMSLSQWLIMRYSIFNLEVIQAAVKLAKQEKAFVVYSLANLCMVWDFRLPLLQLLEFGDI 60
           D   S+WL+MRYSIFN+EVI+AAVK+AKQEK FV   LA+  MV DFRLPLLQLLE GDI
Sbjct: 172 DFKGSKWLVMRYSIFNIEVIEAAVKMAKQEKVFVSLDLASFEMVRDFRLPLLQLLESGDI 231

Query: 61  DLGFANENEAKELI 75
           DL FANE+EAKELI
Sbjct: 232 DLCFANEDEAKELI 245

[Close]

BLAST of MS000706 vs. NCBI nr
Match: XP_022951670.1 (uncharacterized protein LOC111454413 [Cucurbita moschata] >KAG6585583.1 hypothetical protein SDJN03_18316, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020498.1 hypothetical protein SDJN02_17183, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 104.4 bits (259), Expect = 4.4e-19
Identity = 54/75 (72.00%), Postives = 62/75 (82.67%), Query Frame = 0


Query: 1   DMSLSQWLIMRYSIFNLEVIQAAVKLAKQEKAFVVYSLANLCMVWDFRLPLLQLLEFGDI 60
           D   ++WL+MRYSIFN+EVI+AAVK+AKQEK FV   LA+  MV DFR PLLQLLE GDI
Sbjct: 172 DFKGAKWLVMRYSIFNMEVIEAAVKMAKQEKVFVSLDLASFEMVRDFRSPLLQLLESGDI 231

Query: 61  DLGFANENEAKELIG 76
           DL FANE+EAKELIG
Sbjct: 232 DLCFANEDEAKELIG 246

[Close]

BLAST of MS000706 vs. NCBI nr
Match: XP_023538348.1 (uncharacterized protein LOC111799162 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 104.4 bits (259), Expect = 4.4e-19
Identity = 54/75 (72.00%), Postives = 62/75 (82.67%), Query Frame = 0


Query: 1   DMSLSQWLIMRYSIFNLEVIQAAVKLAKQEKAFVVYSLANLCMVWDFRLPLLQLLEFGDI 60
           D   ++WL+MRYSIFN+EVI+AAVK+AKQEK FV   LA+  MV DFR PLLQLLE GDI
Sbjct: 172 DFKGAKWLVMRYSIFNMEVIEAAVKMAKQEKVFVSLDLASFEMVRDFRSPLLQLLESGDI 231

Query: 61  DLGFANENEAKELIG 76
           DL FANE+EAKELIG
Sbjct: 232 DLCFANEDEAKELIG 246

[Close]

BLAST of MS000706 vs. ExPASy TrEMBL
Match: A0A6J1CTD9 (uncharacterized protein LOC111014039 OS=Momordica charantia OX=3673 GN=LOC111014039 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.1e-21
Identity = 58/75 (77.33%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 1   DMSLSQWLIMRYSIFNLEVIQAAVKLAKQEKAFVVYSLANLCMVWDFRLPLLQLLEFGDI 60
           D   S+WL+MRYSIFNLEVIQAAVK+AKQEK FV   LA+  MV DFRLPLLQLLE GDI
Sbjct: 173 DFKGSKWLVMRYSIFNLEVIQAAVKMAKQEKVFVSLDLASFEMVRDFRLPLLQLLESGDI 232

Query: 61  DLGFANENEAKELIG 76
           DL FANE+EAKELIG
Sbjct: 233 DLCFANEDEAKELIG 247

[Close]

BLAST of MS000706 vs. ExPASy TrEMBL
Match: A0A0A0LPB8 (PfkB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G361810 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 9.6e-20
Identity = 55/74 (74.32%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 1   DMSLSQWLIMRYSIFNLEVIQAAVKLAKQEKAFVVYSLANLCMVWDFRLPLLQLLEFGDI 60
           D   S+WL+MRYSIFN+EVI+AAVK+AKQEK FV   LA+  MV DFRLPLLQLLE GDI
Sbjct: 172 DFKGSKWLVMRYSIFNIEVIEAAVKMAKQEKVFVSLDLASFEMVRDFRLPLLQLLESGDI 231

Query: 61  DLGFANENEAKELI 75
           DL FANE+EAKELI
Sbjct: 232 DLCFANEDEAKELI 245

[Close]

BLAST of MS000706 vs. ExPASy TrEMBL
Match: A0A6J1GJH7 (uncharacterized protein LOC111454413 OS=Cucurbita moschata OX=3662 GN=LOC111454413 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.1e-19
Identity = 54/75 (72.00%), Postives = 62/75 (82.67%), Query Frame = 0


Query: 1   DMSLSQWLIMRYSIFNLEVIQAAVKLAKQEKAFVVYSLANLCMVWDFRLPLLQLLEFGDI 60
           D   ++WL+MRYSIFN+EVI+AAVK+AKQEK FV   LA+  MV DFR PLLQLLE GDI
Sbjct: 172 DFKGAKWLVMRYSIFNMEVIEAAVKMAKQEKVFVSLDLASFEMVRDFRSPLLQLLESGDI 231

Query: 61  DLGFANENEAKELIG 76
           DL FANE+EAKELIG
Sbjct: 232 DLCFANEDEAKELIG 246

[Close]

BLAST of MS000706 vs. ExPASy TrEMBL
Match: A0A6J1K2P0 (uncharacterized protein LOC111491853 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491853 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.8e-19
Identity = 54/75 (72.00%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 1   DMSLSQWLIMRYSIFNLEVIQAAVKLAKQEKAFVVYSLANLCMVWDFRLPLLQLLEFGDI 60
           D   S+WL+MRYSIF+LEVIQAAVK+AKQE+ FV   LA+  MV +FRLPLL+LLE GDI
Sbjct: 147 DFKGSKWLVMRYSIFSLEVIQAAVKMAKQERVFVSLDLASFEMVRNFRLPLLKLLESGDI 206

Query: 61  DLGFANENEAKELIG 76
           DL FANE+EAKELIG
Sbjct: 207 DLCFANEDEAKELIG 221

[Close]

BLAST of MS000706 vs. ExPASy TrEMBL
Match: A0A6J1K5H0 (uncharacterized protein LOC111491853 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111491853 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.8e-19
Identity = 54/75 (72.00%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 1   DMSLSQWLIMRYSIFNLEVIQAAVKLAKQEKAFVVYSLANLCMVWDFRLPLLQLLEFGDI 60
           D   S+WL+MRYSIF+LEVIQAAVK+AKQE+ FV   LA+  MV +FRLPLL+LLE GDI
Sbjct: 171 DFKGSKWLVMRYSIFSLEVIQAAVKMAKQERVFVSLDLASFEMVRNFRLPLLKLLESGDI 230

Query: 61  DLGFANENEAKELIG 76
           DL FANE+EAKELIG
Sbjct: 231 DLCFANEDEAKELIG 245

[Close]

BLAST of MS000706 vs. TAIR 10
Match: AT1G19600.1 (pfkB-like carbohydrate kinase family protein )

HSP 1 Score: 74.3 bits (181), Expect = 4.6e-14
Identity = 39/74 (52.70%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 1   DMSLSQWLIMRYSIFNLEVIQAAVKLAKQEKAFVVYSLANLCMVWDFRLPLLQLLEFGDI 60
           D + S+WL++RY++ NL+VIQAA++ AKQE   V   LA+  MV + +  L QLLE G+I
Sbjct: 162 DFTGSKWLVLRYAVLNLQVIQAAIRFAKQEGLSVSLDLASFEMVRNSKSELRQLLESGNI 221

Query: 61  DLGFANENEAKELI 75
           DL FANE+EA EL+
Sbjct: 222 DLCFANEDEAAELL 235

The following BLAST results are available for this feature:

BLAST of MS000706 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144332.1	1.1e-20	77.33	uncharacterized protein LOC111014039 [Momordica charantia]	[more]
XP_038886551.1	4.0e-20	74.67	uncharacterized sugar kinase slr0537 [Benincasa hispida]	[more]
XP_004152687.1	2.0e-19	74.32	uncharacterized protein LOC101214597 [Cucumis sativus] >KGN62617.1 hypothetical ...	[more]
XP_022951670.1	4.4e-19	72.00	uncharacterized protein LOC111454413 [Cucurbita moschata] >KAG6585583.1 hypothet...	[more]
XP_023538348.1	4.4e-19	72.00	uncharacterized protein LOC111799162 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS000706 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS000706 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CTD9	5.1e-21	77.33	uncharacterized protein LOC111014039 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A0A0LPB8	9.6e-20	74.32	PfkB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G361810 PE=4 S...	[more]
A0A6J1GJH7	2.1e-19	72.00	uncharacterized protein LOC111454413 OS=Cucurbita moschata OX=3662 GN=LOC1114544...	[more]
A0A6J1K2P0	4.8e-19	72.00	uncharacterized protein LOC111491853 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1K5H0	4.8e-19	72.00	uncharacterized protein LOC111491853 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of MS000706 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19600.1	4.6e-14	52.70	pfkB-like carbohydrate kinase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029056	Ribokinase-like	GENE3D	3.40.1190.20		coord: 2..75 e-value: 3.0E-6 score: 28.5
IPR029056	Ribokinase-like	SUPERFAMILY	53613	Ribokinase-like	coord: 15..75
None	No IPR available	PANTHER	PTHR43320	SUGAR KINASE	coord: 1..75
None	No IPR available	PANTHER	PTHR43320:SF1	CARBOHYDRATE KINASE-LIKE	coord: 1..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000706.1	MS000706.1	mRNA