MS000670 (gene) Bitter gourd (TR) v1

Overview
NameMS000670
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDUF4283 domain-containing protein
Locationscaffold93: 1372486 .. 1372707 (-)
RNA-Seq ExpressionMS000670
SyntenyMS000670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGTTGAATTCGTCATTTAGAACCCTTATTGTCACCCCCAGAACAAATAGGTTCTTCCAGGAACGTCGGTACAATGATTATTTCCTTTGGATTGAAAAAACATCGAGTCGTAGAGGAGGCATCGCAGAAATCTACAGAGTTGATGAAAAAGGACGAAAATGTTGTATTATGATACCAGAGGGCTTTGAGAGAAGCGGTTGGAAAATTTTCCATAACATGGTT

mRNA sequence

TGGTTGAATTCGTCATTTAGAACCCTTATTGTCACCCCCAGAACAAATAGGTTCTTCCAGGAACGTCGGTACAATGATTATTTCCTTTGGATTGAAAAAACATCGAGTCGTAGAGGAGGCATCGCAGAAATCTACAGAGTTGATGAAAAAGGACGAAAATGTTGTATTATGATACCAGAGGGCTTTGAGAGAAGCGGTTGGAAAATTTTCCATAACATGGTT

Coding sequence (CDS)

TGGTTGAATTCGTCATTTAGAACCCTTATTGTCACCCCCAGAACAAATAGGTTCTTCCAGGAACGTCGGTACAATGATTATTTCCTTTGGATTGAAAAAACATCGAGTCGTAGAGGAGGCATCGCAGAAATCTACAGAGTTGATGAAAAAGGACGAAAATGTTGTATTATGATACCAGAGGGCTTTGAGAGAAGCGGTTGGAAAATTTTCCATAACATGGTT

Protein sequence

WLNSSFRTLIVTPRTNRFFQERRYNDYFLWIEKTSSRRGGIAEIYRVDEKGRKCCIMIPEGFERSGWKIFHNMV
Homology
BLAST of MS000670 vs. NCBI nr
Match: TYK10355.1 (hypothetical protein E5676_scaffold367G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 4.2e-22
Identity = 47/74 (63.51%), Postives = 62/74 (83.78%), Query Frame = 0

Query: 1   WLNSSFRTLIVTPRTNRFFQERRYNDYFLWIEKTSSRRGGIAEIYRVDEKGRKCCIMIPE 60
           WL SSFRTL+ TPRT RFF E+R+ DY LW++KT +R+G IAEIYRVD++GRKCCI++PE
Sbjct: 143 WLKSSFRTLLDTPRTTRFFLEKRFEDYCLWVQKTYNRKGYIAEIYRVDDRGRKCCILVPE 202

Query: 61  GFERSGWKIFHNMV 75
           G E+SGW  F +++
Sbjct: 203 GSEKSGWAQFVSLL 216

BLAST of MS000670 vs. NCBI nr
Match: KAA0050054.1 (hypothetical protein E6C27_scaffold675G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 110.5 bits (275), Expect = 6.1e-21
Identity = 46/74 (62.16%), Postives = 61/74 (82.43%), Query Frame = 0

Query: 1   WLNSSFRTLIVTPRTNRFFQERRYNDYFLWIEKTSSRRGGIAEIYRVDEKGRKCCIMIPE 60
           WL SSFRTL+ T RT RFF E+R+ DY LW++KT +R+G IAEIYRVD++GRKCCI++PE
Sbjct: 91  WLKSSFRTLLDTLRTTRFFLEKRFEDYCLWVQKTYNRKGYIAEIYRVDDRGRKCCILVPE 150

Query: 61  GFERSGWKIFHNMV 75
           G E+SGW  F +++
Sbjct: 151 GSEKSGWAQFVSLL 164

BLAST of MS000670 vs. NCBI nr
Match: KAA0063662.1 (hypothetical protein E6C27_scaffold329G001780 [Cucumis melo var. makuwa])

HSP 1 Score: 110.2 bits (274), Expect = 8.0e-21
Identity = 42/74 (56.76%), Postives = 62/74 (83.78%), Query Frame = 0

Query: 1   WLNSSFRTLIVTPRTNRFFQERRYNDYFLWIEKTSSRRGGIAEIYRVDEKGRKCCIMIPE 60
           WL ++F+ L+ TPRT RFF E+RY D+ LW++K  +RRG IAEIYRVD++GRKCCI++PE
Sbjct: 53  WLKTTFKALLNTPRTTRFFVEKRYVDFCLWVQKIHNRRGYIAEIYRVDDRGRKCCILVPE 112

Query: 61  GFERSGWKIFHNMV 75
           G +++GW +F++M+
Sbjct: 113 GLDKTGWALFNDML 126

BLAST of MS000670 vs. NCBI nr
Match: TYK18363.1 (hypothetical protein E5676_scaffold456G00820 [Cucumis melo var. makuwa])

HSP 1 Score: 110.2 bits (274), Expect = 8.0e-21
Identity = 42/74 (56.76%), Postives = 62/74 (83.78%), Query Frame = 0

Query: 1   WLNSSFRTLIVTPRTNRFFQERRYNDYFLWIEKTSSRRGGIAEIYRVDEKGRKCCIMIPE 60
           WL ++F+ L+ TPRT RFF E+RY D+ LW++K  +RRG IAEIYRVD++GRKCCI++PE
Sbjct: 53  WLKTTFKALLNTPRTTRFFVEKRYVDFCLWVQKIHNRRGYIAEIYRVDDRGRKCCILVPE 112

Query: 61  GFERSGWKIFHNMV 75
           G +++GW +F++M+
Sbjct: 113 GLDKTGWALFNDML 126

BLAST of MS000670 vs. NCBI nr
Match: KAA0039949.1 (hypothetical protein E6C27_scaffold122G002290 [Cucumis melo var. makuwa] >TYK24554.1 hypothetical protein E5676_scaffold266G00990 [Cucumis melo var. makuwa])

HSP 1 Score: 109.4 bits (272), Expect = 1.4e-20
Identity = 42/74 (56.76%), Postives = 61/74 (82.43%), Query Frame = 0

Query: 1   WLNSSFRTLIVTPRTNRFFQERRYNDYFLWIEKTSSRRGGIAEIYRVDEKGRKCCIMIPE 60
           WL  +F+ L+ TPRT RFF E+RY D+ LW++K  +RRG IAEIYRVD++GRKCCI++PE
Sbjct: 53  WLKMTFKALLNTPRTTRFFVEKRYVDFCLWVQKIHNRRGYIAEIYRVDDRGRKCCILVPE 112

Query: 61  GFERSGWKIFHNMV 75
           G +++GW +F++M+
Sbjct: 113 GLDKTGWALFNDML 126

BLAST of MS000670 vs. ExPASy TrEMBL
Match: A0A5D3CFS8 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00330 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.0e-22
Identity = 47/74 (63.51%), Postives = 62/74 (83.78%), Query Frame = 0

Query: 1   WLNSSFRTLIVTPRTNRFFQERRYNDYFLWIEKTSSRRGGIAEIYRVDEKGRKCCIMIPE 60
           WL SSFRTL+ TPRT RFF E+R+ DY LW++KT +R+G IAEIYRVD++GRKCCI++PE
Sbjct: 143 WLKSSFRTLLDTPRTTRFFLEKRFEDYCLWVQKTYNRKGYIAEIYRVDDRGRKCCILVPE 202

Query: 61  GFERSGWKIFHNMV 75
           G E+SGW  F +++
Sbjct: 203 GSEKSGWAQFVSLL 216

BLAST of MS000670 vs. ExPASy TrEMBL
Match: A0A5A7U495 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00340 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.0e-21
Identity = 46/74 (62.16%), Postives = 61/74 (82.43%), Query Frame = 0

Query: 1   WLNSSFRTLIVTPRTNRFFQERRYNDYFLWIEKTSSRRGGIAEIYRVDEKGRKCCIMIPE 60
           WL SSFRTL+ T RT RFF E+R+ DY LW++KT +R+G IAEIYRVD++GRKCCI++PE
Sbjct: 91  WLKSSFRTLLDTLRTTRFFLEKRFEDYCLWVQKTYNRKGYIAEIYRVDDRGRKCCILVPE 150

Query: 61  GFERSGWKIFHNMV 75
           G E+SGW  F +++
Sbjct: 151 GSEKSGWAQFVSLL 164

BLAST of MS000670 vs. ExPASy TrEMBL
Match: A0A5D3D494 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00820 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.9e-21
Identity = 42/74 (56.76%), Postives = 62/74 (83.78%), Query Frame = 0

Query: 1   WLNSSFRTLIVTPRTNRFFQERRYNDYFLWIEKTSSRRGGIAEIYRVDEKGRKCCIMIPE 60
           WL ++F+ L+ TPRT RFF E+RY D+ LW++K  +RRG IAEIYRVD++GRKCCI++PE
Sbjct: 53  WLKTTFKALLNTPRTTRFFVEKRYVDFCLWVQKIHNRRGYIAEIYRVDDRGRKCCILVPE 112

Query: 61  GFERSGWKIFHNMV 75
           G +++GW +F++M+
Sbjct: 113 GLDKTGWALFNDML 126

BLAST of MS000670 vs. ExPASy TrEMBL
Match: A0A5A7V5Z9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G001780 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.9e-21
Identity = 42/74 (56.76%), Postives = 62/74 (83.78%), Query Frame = 0

Query: 1   WLNSSFRTLIVTPRTNRFFQERRYNDYFLWIEKTSSRRGGIAEIYRVDEKGRKCCIMIPE 60
           WL ++F+ L+ TPRT RFF E+RY D+ LW++K  +RRG IAEIYRVD++GRKCCI++PE
Sbjct: 53  WLKTTFKALLNTPRTTRFFVEKRYVDFCLWVQKIHNRRGYIAEIYRVDDRGRKCCILVPE 112

Query: 61  GFERSGWKIFHNMV 75
           G +++GW +F++M+
Sbjct: 113 GLDKTGWALFNDML 126

BLAST of MS000670 vs. ExPASy TrEMBL
Match: A0A5D3DLT1 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00990 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.6e-21
Identity = 42/74 (56.76%), Postives = 61/74 (82.43%), Query Frame = 0

Query: 1   WLNSSFRTLIVTPRTNRFFQERRYNDYFLWIEKTSSRRGGIAEIYRVDEKGRKCCIMIPE 60
           WL  +F+ L+ TPRT RFF E+RY D+ LW++K  +RRG IAEIYRVD++GRKCCI++PE
Sbjct: 53  WLKMTFKALLNTPRTTRFFVEKRYVDFCLWVQKIHNRRGYIAEIYRVDDRGRKCCILVPE 112

Query: 61  GFERSGWKIFHNMV 75
           G +++GW +F++M+
Sbjct: 113 GLDKTGWALFNDML 126

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK10355.14.2e-2263.51hypothetical protein E5676_scaffold367G00330 [Cucumis melo var. makuwa][more]
KAA0050054.16.1e-2162.16hypothetical protein E6C27_scaffold675G00340 [Cucumis melo var. makuwa][more]
KAA0063662.18.0e-2156.76hypothetical protein E6C27_scaffold329G001780 [Cucumis melo var. makuwa][more]
TYK18363.18.0e-2156.76hypothetical protein E5676_scaffold456G00820 [Cucumis melo var. makuwa][more]
KAA0039949.11.4e-2056.76hypothetical protein E6C27_scaffold122G002290 [Cucumis melo var. makuwa] >TYK245... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CFS82.0e-2263.51DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7U4953.0e-2162.16DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3D4943.9e-2156.76Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V5Z93.9e-2156.76Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DLT16.6e-2156.76DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS000670.1MS000670.1mRNA