MS000669 (gene) Bitter gourd (TR) v1

Overview


Name	MS000669
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DUF4283 domain-containing protein
Location	scaffold93: 1371869 .. 1372141 (-)
RNA-Seq Expression	MS000669
Synteny	MS000669

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAACAGGCAAGTTTACTCTGTATGAACAAAGGCTGGGTTACGGTGGGTGCTTTCTATGTGAAATTTGAGAAATGGCAAGATGACTTACATGCCTCCCCCAGATTCATTTCGAGTTACGGGGGTTGGTTGAGATTTAGAGGTATCCCTCTGCATCTATGGAATATCGACACCTTTAAGAAGATAGGTGAAGCTTGTGGAGGCTTCATTTCAGCAGGGGTTAATTCATTGCGAAAACTGGACATTATCGAAGCCTCTATTAAAGTTCGGGATAAT

mRNA sequence

GAACAGGCAAGTTTACTCTGTATGAACAAAGGCTGGGTTACGGTGGGTGCTTTCTATGTGAAATTTGAGAAATGGCAAGATGACTTACATGCCTCCCCCAGATTCATTTCGAGTTACGGGGGTTGGTTGAGATTTAGAGGTATCCCTCTGCATCTATGGAATATCGACACCTTTAAGAAGATAGGTGAAGCTTGTGGAGGCTTCATTTCAGCAGGGGTTAATTCATTGCGAAAACTGGACATTATCGAAGCCTCTATTAAAGTTCGGGATAAT

Coding sequence (CDS)

GAACAGGCAAGTTTACTCTGTATGAACAAAGGCTGGGTTACGGTGGGTGCTTTCTATGTGAAATTTGAGAAATGGCAAGATGACTTACATGCCTCCCCCAGATTCATTTCGAGTTACGGGGGTTGGTTGAGATTTAGAGGTATCCCTCTGCATCTATGGAATATCGACACCTTTAAGAAGATAGGTGAAGCTTGTGGAGGCTTCATTTCAGCAGGGGTTAATTCATTGCGAAAACTGGACATTATCGAAGCCTCTATTAAAGTTCGGGATAAT

Protein sequence

EQASLLCMNKGWVTVGAFYVKFEKWQDDLHASPRFISSYGGWLRFRGIPLHLWNIDTFKKIGEACGGFISAGVNSLRKLDIIEASIKVRDN

Homology

[Close]

BLAST of MS000669 vs. NCBI nr
Match: KAA0039949.1 (hypothetical protein E6C27_scaffold122G002290 [Cucumis melo var. makuwa] >TYK24554.1 hypothetical protein E5676_scaffold266G00990 [Cucumis melo var. makuwa])

HSP 1 Score: 137.5 bits (345), Expect = 5.7e-29
Identity = 58/91 (63.74%), Postives = 70/91 (76.92%), Query Frame = 0


Query: 1   EQASLLCMNKGWVTVGAFYVKFEKWQDDLHASPRFISSYGGWLRFRGIPLHLWNIDTFKK 60
           E A+LLC N GW TVG FYVKFEKW  + HA  + I SYGGW RFRGIPLH+WN++TF +
Sbjct: 271 ELANLLCKNIGWTTVGPFYVKFEKWSKNAHADTKVIPSYGGWTRFRGIPLHIWNLNTFIQ 330

Query: 61  IGEACGGFISAGVNSLRKLDIIEASIKVRDN 92
           IGEACGGFI A   S+ KL++ EA IKV++N
Sbjct: 331 IGEACGGFIDAAPESINKLELTEALIKVKEN 361

[Close]

BLAST of MS000669 vs. NCBI nr
Match: KAA0050054.1 (hypothetical protein E6C27_scaffold675G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 137.1 bits (344), Expect = 7.5e-29
Identity = 54/91 (59.34%), Postives = 70/91 (76.92%), Query Frame = 0


Query: 1   EQASLLCMNKGWVTVGAFYVKFEKWQDDLHASPRFISSYGGWLRFRGIPLHLWNIDTFKK 60
           EQA+L+C NKGW TVG FYVKFE+W    HASP+ I SYGGW++ RG+PLH WN+++F +
Sbjct: 285 EQANLICKNKGWTTVGRFYVKFEEWNQKAHASPKVIPSYGGWIKVRGVPLHAWNLESFTQ 344

Query: 61  IGEACGGFISAGVNSLRKLDIIEASIKVRDN 92
           IG+ACGGFI     +    DIIEASI+++DN
Sbjct: 345 IGDACGGFIEVAKETRELTDIIEASIRIKDN 375

[Close]

BLAST of MS000669 vs. NCBI nr
Match: TYK10355.1 (hypothetical protein E5676_scaffold367G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 137.1 bits (344), Expect = 7.5e-29
Identity = 54/91 (59.34%), Postives = 70/91 (76.92%), Query Frame = 0


Query: 1   EQASLLCMNKGWVTVGAFYVKFEKWQDDLHASPRFISSYGGWLRFRGIPLHLWNIDTFKK 60
           EQA+L+C NKGW TVG FYVKFE+W    HASP+ I SYGGW++ RG+PLH WN+++F +
Sbjct: 337 EQANLICKNKGWTTVGRFYVKFEEWNQKAHASPKVIPSYGGWIKVRGVPLHAWNLESFTQ 396

Query: 61  IGEACGGFISAGVNSLRKLDIIEASIKVRDN 92
           IG+ACGGFI     +    DIIEASI+++DN
Sbjct: 397 IGDACGGFIEVAKETRELTDIIEASIRIKDN 427

[Close]

BLAST of MS000669 vs. NCBI nr
Match: KAA0039967.1 (hypothetical protein E6C27_scaffold122G002490 [Cucumis melo var. makuwa])

HSP 1 Score: 136.0 bits (341), Expect = 1.7e-28
Identity = 54/91 (59.34%), Postives = 68/91 (74.73%), Query Frame = 0


Query: 1   EQASLLCMNKGWVTVGAFYVKFEKWQDDLHASPRFISSYGGWLRFRGIPLHLWNIDTFKK 60
           EQA LLC NKGW TVG FYVKFE+W    HASP+ I SYGGW++ RG+PLH WN+++F +
Sbjct: 231 EQAKLLCKNKGWTTVGRFYVKFEEWSQKTHASPKVIPSYGGWIKVRGVPLHAWNLESFIQ 290

Query: 61  IGEACGGFISAGVNSLRKLDIIEASIKVRDN 92
           IG+ACGGF+     +    DI EASIK++DN
Sbjct: 291 IGDACGGFVEVAKETRELTDIFEASIKIKDN 321

[Close]

BLAST of MS000669 vs. NCBI nr
Match: KAA0040039.1 (hypothetical protein E6C27_scaffold366G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 136.0 bits (341), Expect = 1.7e-28
Identity = 54/91 (59.34%), Postives = 68/91 (74.73%), Query Frame = 0


Query: 1   EQASLLCMNKGWVTVGAFYVKFEKWQDDLHASPRFISSYGGWLRFRGIPLHLWNIDTFKK 60
           EQA LLC NKGW TVG FYVKFE+W    HASP+ I SYGGW++ RG+PLH WN+++F +
Sbjct: 247 EQAKLLCKNKGWTTVGRFYVKFEEWSQKTHASPKVIPSYGGWIKVRGVPLHAWNLESFIQ 306

Query: 61  IGEACGGFISAGVNSLRKLDIIEASIKVRDN 92
           IG+ACGGF+     +    DI EASIK++DN
Sbjct: 307 IGDACGGFVEVAKETRELTDIFEASIKIKDN 337

[Close]

BLAST of MS000669 vs. ExPASy TrEMBL
Match: A0A5D3DLT1 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00990 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.8e-29
Identity = 58/91 (63.74%), Postives = 70/91 (76.92%), Query Frame = 0


Query: 1   EQASLLCMNKGWVTVGAFYVKFEKWQDDLHASPRFISSYGGWLRFRGIPLHLWNIDTFKK 60
           E A+LLC N GW TVG FYVKFEKW  + HA  + I SYGGW RFRGIPLH+WN++TF +
Sbjct: 271 ELANLLCKNIGWTTVGPFYVKFEKWSKNAHADTKVIPSYGGWTRFRGIPLHIWNLNTFIQ 330

Query: 61  IGEACGGFISAGVNSLRKLDIIEASIKVRDN 92
           IGEACGGFI A   S+ KL++ EA IKV++N
Sbjct: 331 IGEACGGFIDAAPESINKLELTEALIKVKEN 361

[Close]

BLAST of MS000669 vs. ExPASy TrEMBL
Match: A0A5A7U495 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00340 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.6e-29
Identity = 54/91 (59.34%), Postives = 70/91 (76.92%), Query Frame = 0


Query: 1   EQASLLCMNKGWVTVGAFYVKFEKWQDDLHASPRFISSYGGWLRFRGIPLHLWNIDTFKK 60
           EQA+L+C NKGW TVG FYVKFE+W    HASP+ I SYGGW++ RG+PLH WN+++F +
Sbjct: 285 EQANLICKNKGWTTVGRFYVKFEEWNQKAHASPKVIPSYGGWIKVRGVPLHAWNLESFTQ 344

Query: 61  IGEACGGFISAGVNSLRKLDIIEASIKVRDN 92
           IG+ACGGFI     +    DIIEASI+++DN
Sbjct: 345 IGDACGGFIEVAKETRELTDIIEASIRIKDN 375

[Close]

BLAST of MS000669 vs. ExPASy TrEMBL
Match: A0A5D3CFS8 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00330 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.6e-29
Identity = 54/91 (59.34%), Postives = 70/91 (76.92%), Query Frame = 0


Query: 1   EQASLLCMNKGWVTVGAFYVKFEKWQDDLHASPRFISSYGGWLRFRGIPLHLWNIDTFKK 60
           EQA+L+C NKGW TVG FYVKFE+W    HASP+ I SYGGW++ RG+PLH WN+++F +
Sbjct: 337 EQANLICKNKGWTTVGRFYVKFEEWNQKAHASPKVIPSYGGWIKVRGVPLHAWNLESFTQ 396

Query: 61  IGEACGGFISAGVNSLRKLDIIEASIKVRDN 92
           IG+ACGGFI     +    DIIEASI+++DN
Sbjct: 397 IGDACGGFIEVAKETRELTDIIEASIRIKDN 427

[Close]

BLAST of MS000669 vs. ExPASy TrEMBL
Match: A0A5A7TFK7 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00060 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 8.1e-29
Identity = 54/91 (59.34%), Postives = 68/91 (74.73%), Query Frame = 0


Query: 1   EQASLLCMNKGWVTVGAFYVKFEKWQDDLHASPRFISSYGGWLRFRGIPLHLWNIDTFKK 60
           EQA LLC NKGW TVG FYVKFE+W    HASP+ I SYGGW++ RG+PLH WN+++F +
Sbjct: 247 EQAKLLCKNKGWTTVGRFYVKFEEWSQKTHASPKVIPSYGGWIKVRGVPLHAWNLESFIQ 306

Query: 61  IGEACGGFISAGVNSLRKLDIIEASIKVRDN 92
           IG+ACGGF+     +    DI EASIK++DN
Sbjct: 307 IGDACGGFVEVAKETRELTDIFEASIKIKDN 337

[Close]

BLAST of MS000669 vs. ExPASy TrEMBL
Match: A0A5D3DLP0 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00770 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 8.1e-29
Identity = 54/91 (59.34%), Postives = 68/91 (74.73%), Query Frame = 0


Query: 1   EQASLLCMNKGWVTVGAFYVKFEKWQDDLHASPRFISSYGGWLRFRGIPLHLWNIDTFKK 60
           EQA LLC NKGW TVG FYVKFE+W    HASP+ I SYGGW++ RG+PLH WN+++F +
Sbjct: 231 EQAKLLCKNKGWTTVGRFYVKFEEWSQKTHASPKVIPSYGGWIKVRGVPLHAWNLESFIQ 290

Query: 61  IGEACGGFISAGVNSLRKLDIIEASIKVRDN 92
           IG+ACGGF+     +    DI EASIK++DN
Sbjct: 291 IGDACGGFVEVAKETRELTDIFEASIKIKDN 321

The following BLAST results are available for this feature:

BLAST of MS000669 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039949.1	5.7e-29	63.74	hypothetical protein E6C27_scaffold122G002290 [Cucumis melo var. makuwa] >TYK245...	[more]
KAA0050054.1	7.5e-29	59.34	hypothetical protein E6C27_scaffold675G00340 [Cucumis melo var. makuwa]	[more]
TYK10355.1	7.5e-29	59.34	hypothetical protein E5676_scaffold367G00330 [Cucumis melo var. makuwa]	[more]
KAA0039967.1	1.7e-28	59.34	hypothetical protein E6C27_scaffold122G002490 [Cucumis melo var. makuwa]	[more]
KAA0040039.1	1.7e-28	59.34	hypothetical protein E6C27_scaffold366G00060 [Cucumis melo var. makuwa]	[more]

BLAST of MS000669 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS000669 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DLT1	2.8e-29	63.74	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7U495	3.6e-29	59.34	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3CFS8	3.6e-29	59.34	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TFK7	8.1e-29	59.34	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3DLP0	8.1e-29	59.34	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of MS000669 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 7..88 e-value: 4.5E-14 score: 52.2
None	No IPR available	PANTHER	PTHR34427	DUF4283 DOMAIN PROTEIN	coord: 2..90
None	No IPR available	PANTHER	PTHR34427:SF5	DUF4283 DOMAIN PROTEIN	coord: 2..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000669.1	MS000669.1	mRNA