MS000646 (gene) Bitter gourd (TR) v1

Overview


Name	MS000646
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RRM domain-containing protein
Location	scaffold93: 794488 .. 796101 (-)
RNA-Seq Expression	MS000646
Synteny	MS000646

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATCAGCTACGGAGGAGCAATTTGCTGCCTTTGAGGAGAAGGTAAAACGGACTGTCTATGTTGATAACCTCTCTCCTCAAGTGACTGAGCCTGTCATGAGAACTGCTTTAGATCAGTTTGGAACTGTTGTCAGGGTCCAATTTATTCCAAACTACATGGAGCCATTGAATAGCTCTCAATGTGCTCTAGTAGAGATGAAGGACTCGAAGGAGGCCAAATCCGTGATTTCAGTGATAGCCGAGTTCCCGTTCATGATTTCTGGAATGCCAAGACCGGTGAGGGCACTCCCTGCAGAAGTGGAAATGTTTGATGATCGCCCGATAAAGCCTGGTAGCAAGATTAGCTTTTCCTGGCTGGATCAGAATGATCCTGATTTTCAAGTTGCAAAGAAAATGAAGCTTTTTACAAGGAAACACGCCGCGGAAACTGCATTCTTGCTCAAGGCATGAGTTTCGAAATCCCATCACCAACTTAAACAAGAAATTTATTTCCAATGCTATTTTTATTTGTTGGATTTTTAGATTATAAATTTAGTTTGGGGACTATATGATTGTATTTATTTAGTTTCTTACATTTTAAAAAGTCTAAATTACATCCTTGAACTTTGAATTGTGATTCTATATATTCATCACCGTTAACTAAATGATGTTATGAGATGTTTATTTAACAAACATCAATTAATTTAGCCCTTGTGGCATATGGCTGGCAGAAAAAGAAGTATAGCTAAACAAAATAACGTGGCATGTGCATCTTTCATTATAGTCCATTGTCACTCTATTTTGTTTAGTTATCCACCACCTTCTGCCATTTGTTTGCCACATCGTGCCAAATCAATGAATGTTTGTTTATCTAATAAGCATGTCAAATCTTAGCGGGTATATTGAATCATAATTTAAAGGGCAGGAATGTAACTAAAACTTTTTATAGTTTAAAGGCTAAATAAACACAATCATCAAAGTTCATAACTAAATTTGTAATTTGGTTAAATTATAAATTTGGTCCTCCAGCTTTTAGAGTTGTATCTATTTATTCCTTCCTGTATTTTAAAAGGTTTATGATAGGCTTCCGAAGTTTTGAGGTGGTATCTATTTAGTCCTTATACCTAAAAAGATTCTAATATGTCTCCGAACGATCAATTTTGTGTCTAAGGTCTCTGTCATTGACATCATTAGTTTAACACTTATGCCACCAAACGCTTGAATTTCCTTGTAAATAGCCCACCATATAACCTTCAAATAATATGGCTAGCGTGCCACGTAGGTGTTAAACTGACGAAGATCCGTCAACGACAGAGACCTATTAGACATAAAGTTGAAAGTTCAACCTATTAGAAACTTTTAAAGTACATGAGCTTGAAAGACTAGATGAGCACGAGCTTGAAAGTTCAGAGATCGAGAGACTACATAAGCATAATGTTGTCGGGTAATTGTTAACAGAGGTTTGTCCCATTTATCTTGCAGCAACAGTTGCTAGAAGAGGAGAAGCTGGCAAAGCAGCAACAAGAAGTACTGAAAGGAAACTACAAGAAACATGAGATTGTAGAAAGTGTGATGACTGATGGAACTGCTCGCAGGTTAGCAAAATGTTATGATATGAGAGTTTTTGATGAT

mRNA sequence

ATGGGATCAGCTACGGAGGAGCAATTTGCTGCCTTTGAGGAGAAGGTAAAACGGACTGTCTATGTTGATAACCTCTCTCCTCAAGTGACTGAGCCTGTCATGAGAACTGCTTTAGATCAGTTTGGAACTGTTGTCAGGGTCCAATTTATTCCAAACTACATGGAGCCATTGAATAGCTCTCAATGTGCTCTAGTAGAGATGAAGGACTCGAAGGAGGCCAAATCCGTGATTTCAGTGATAGCCGAGTTCCCGTTCATGATTTCTGGAATGCCAAGACCGGTGAGGGCACTCCCTGCAGAAGTGGAAATGTTTGATGATCGCCCGATAAAGCCTGGTAGCAAGATTAGCTTTTCCTGGCTGGATCAGAATGATCCTGATTTTCAAGTTGCAAAGAAAATGAAGCTTTTTACAAGGAAACACGCCGCGGAAACTCTTGCTCAAGGCATGAAAGAGGAGAAGCTGGCAAAGCAGCAACAAGAAGTACTGAAAGGAAACTACAAGAAACATGAGATTGTAGAAAGTGTGATGACTGATGGAACTGCTCGCAGGTTAGCAAAATGTTATGATATGAGAGTTTTTGATGAT

Coding sequence (CDS)

ATGGGATCAGCTACGGAGGAGCAATTTGCTGCCTTTGAGGAGAAGGTAAAACGGACTGTCTATGTTGATAACCTCTCTCCTCAAGTGACTGAGCCTGTCATGAGAACTGCTTTAGATCAGTTTGGAACTGTTGTCAGGGTCCAATTTATTCCAAACTACATGGAGCCATTGAATAGCTCTCAATGTGCTCTAGTAGAGATGAAGGACTCGAAGGAGGCCAAATCCGTGATTTCAGTGATAGCCGAGTTCCCGTTCATGATTTCTGGAATGCCAAGACCGGTGAGGGCACTCCCTGCAGAAGTGGAAATGTTTGATGATCGCCCGATAAAGCCTGGTAGCAAGATTAGCTTTTCCTGGCTGGATCAGAATGATCCTGATTTTCAAGTTGCAAAGAAAATGAAGCTTTTTACAAGGAAACACGCCGCGGAAACTCTTGCTCAAGGCATGAAAGAGGAGAAGCTGGCAAAGCAGCAACAAGAAGTACTGAAAGGAAACTACAAGAAACATGAGATTGTAGAAAGTGTGATGACTGATGGAACTGCTCGCAGGTTAGCAAAATGTTATGATATGAGAGTTTTTGATGAT

Protein sequence

MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSSQCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAEVEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETLAQGMKEEKLAKQQQEVLKGNYKKHEIVESVMTDGTARRLAKCYDMRVFDD

Homology

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BLAST of MS000646 vs. NCBI nr
Match: XP_022150340.1 (uncharacterized protein LOC111018537 [Momordica charantia] >XP_022150341.1 uncharacterized protein LOC111018537 [Momordica charantia] >XP_022150342.1 uncharacterized protein LOC111018537 [Momordica charantia])

HSP 1 Score: 362.8 bits (930), Expect = 1.8e-96
Identity = 188/199 (94.47%), Postives = 190/199 (95.48%), Query Frame = 0


Query: 1   MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSS 60
           MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSS
Sbjct: 1   MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSS 60

Query: 61  QCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAEVEMFDDRPIKPGSKISFSWL 120
           QCALVEMKD KEAKSVISVIAEFPFMISGMPRPVRA PAEVEMFDDRPIKPGSKISFSWL
Sbjct: 61  QCALVEMKDLKEAKSVISVIAEFPFMISGMPRPVRARPAEVEMFDDRPIKPGSKISFSWL 120

Query: 121 DQNDPDFQVAKKMKLFTRKHAAETL----AQGMKEEKLAKQQQEVLKGNYKKHEIVESVM 180
           DQNDPDFQVAKKMKLFTRKHAAET      Q ++EEKLAKQQQEVLKGNYKKHEIVESVM
Sbjct: 121 DQNDPDFQVAKKMKLFTRKHAAETAFLLKQQLLEEEKLAKQQQEVLKGNYKKHEIVESVM 180

Query: 181 TDGTARRLAKCYDMRVFDD 196
           TDGTARRLAKCYDMRVFDD
Sbjct: 181 TDGTARRLAKCYDMRVFDD 199

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BLAST of MS000646 vs. NCBI nr
Match: XP_038886330.1 (uncharacterized protein LOC120076542 [Benincasa hispida])

HSP 1 Score: 307.4 bits (786), Expect = 9.0e-80
Identity = 158/199 (79.40%), Postives = 173/199 (86.93%), Query Frame = 0


Query: 1   MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSS 60
           MGS  +EQFA FEEKVKRTVYVDNLSP VTEPV+RTALDQFGTVV V FIPNY EP+N+S
Sbjct: 1   MGSMKDEQFAMFEEKVKRTVYVDNLSPHVTEPVLRTALDQFGTVVSVHFIPNYTEPINTS 60

Query: 61  QCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAEVEMFDDRPIKPGSKISFSWL 120
           QCALVEMKD KEAKSVISVIA+FPFM+SGMPRPVRA PAEVEMFDDRP+KPG KISF+WL
Sbjct: 61  QCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFTWL 120

Query: 121 DQNDPDFQVAKKMKLFTRKHAAETL----AQGMKEEKLAKQQQEVLKGNYKKHEIVESVM 180
           +++DPDF+VAKKMKL TRKH AE          +EEKLAKQQQE LKGNYKK+EIVESVM
Sbjct: 121 EKDDPDFEVAKKMKLLTRKHVAEAAFLLKHHLAEEEKLAKQQQEALKGNYKKYEIVESVM 180

Query: 181 TDGTARRLAKCYDMRVFDD 196
            DGTARRLAK Y+MRV DD
Sbjct: 181 ADGTARRLAKRYNMRVSDD 199

[Close]

BLAST of MS000646 vs. NCBI nr
Match: KAG6592987.1 (hypothetical protein SDJN03_12463, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 305.1 bits (780), Expect = 4.4e-79
Identity = 156/199 (78.39%), Postives = 174/199 (87.44%), Query Frame = 0


Query: 1   MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSS 60
           MGSAT+EQ+A FEEKVKRTVYVDNLSPQVTEPV+RTALDQFGTVV V FIPN+ EP+NSS
Sbjct: 59  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 118

Query: 61  QCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAEVEMFDDRPIKPGSKISFSWL 120
           QCALVEMKDSKEA SVISVIA+FPFM+SGMPRPVRA PAEVEMFDDRPIKPG KISF WL
Sbjct: 119 QCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 178

Query: 121 DQNDPDFQVAKKMKLFTRKHAAETL----AQGMKEEKLAKQQQEVLKGNYKKHEIVESVM 180
            ++DPDF+VAKKMK  T++H AE       Q ++EEKLAKQQQ+ LK NYKK+EIVE VM
Sbjct: 179 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 238

Query: 181 TDGTARRLAKCYDMRVFDD 196
           TDGTARRLA+ Y+MRV DD
Sbjct: 239 TDGTARRLARRYNMRVADD 257

[Close]

BLAST of MS000646 vs. NCBI nr
Match: KAG7025396.1 (hypothetical protein SDJN02_11891, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 305.1 bits (780), Expect = 4.4e-79
Identity = 156/199 (78.39%), Postives = 174/199 (87.44%), Query Frame = 0


Query: 1   MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSS 60
           MGSAT+EQ+A FEEKVKRTVYVDNLSPQVTEPV+RTALDQFGTVV V FIPN+ EP+NSS
Sbjct: 58  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 117

Query: 61  QCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAEVEMFDDRPIKPGSKISFSWL 120
           QCALVEMKDSKEA SVISVIA+FPFM+SGMPRPVRA PAEVEMFDDRPIKPG KISF WL
Sbjct: 118 QCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 177

Query: 121 DQNDPDFQVAKKMKLFTRKHAAETL----AQGMKEEKLAKQQQEVLKGNYKKHEIVESVM 180
            ++DPDF+VAKKMK  T++H AE       Q ++EEKLAKQQQ+ LK NYKK+EIVE VM
Sbjct: 178 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 237

Query: 181 TDGTARRLAKCYDMRVFDD 196
           TDGTARRLA+ Y+MRV DD
Sbjct: 238 TDGTARRLARRYNMRVADD 256

[Close]

BLAST of MS000646 vs. NCBI nr
Match: XP_023514768.1 (uncharacterized protein LOC111778981 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 305.1 bits (780), Expect = 4.4e-79
Identity = 156/199 (78.39%), Postives = 174/199 (87.44%), Query Frame = 0


Query: 1   MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSS 60
           MGSAT+EQ+A FEEKVKRTVYVDNLSPQVTEPV+RTALDQFGTVV V FIPN+ EP+NSS
Sbjct: 1   MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 60

Query: 61  QCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAEVEMFDDRPIKPGSKISFSWL 120
           QCALVEMKDSKEA SVISVIA+FPFM+SGMPRPVRA PAEVEMFDDRPIKPG KISF WL
Sbjct: 61  QCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 120

Query: 121 DQNDPDFQVAKKMKLFTRKHAAETL----AQGMKEEKLAKQQQEVLKGNYKKHEIVESVM 180
            ++DPDF+VAKKMK  T++H AE       Q ++EEKLAKQQQ+ LK NYKK+EIVE VM
Sbjct: 121 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 180

Query: 181 TDGTARRLAKCYDMRVFDD 196
           TDGTARRLA+ Y+MRV DD
Sbjct: 181 TDGTARRLARRYNMRVADD 199

[Close]

BLAST of MS000646 vs. ExPASy TrEMBL
Match: A0A6J1DB90 (uncharacterized protein LOC111018537 OS=Momordica charantia OX=3673 GN=LOC111018537 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 8.7e-97
Identity = 188/199 (94.47%), Postives = 190/199 (95.48%), Query Frame = 0


Query: 1   MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSS 60
           MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSS
Sbjct: 1   MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSS 60

Query: 61  QCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAEVEMFDDRPIKPGSKISFSWL 120
           QCALVEMKD KEAKSVISVIAEFPFMISGMPRPVRA PAEVEMFDDRPIKPGSKISFSWL
Sbjct: 61  QCALVEMKDLKEAKSVISVIAEFPFMISGMPRPVRARPAEVEMFDDRPIKPGSKISFSWL 120

Query: 121 DQNDPDFQVAKKMKLFTRKHAAETL----AQGMKEEKLAKQQQEVLKGNYKKHEIVESVM 180
           DQNDPDFQVAKKMKLFTRKHAAET      Q ++EEKLAKQQQEVLKGNYKKHEIVESVM
Sbjct: 121 DQNDPDFQVAKKMKLFTRKHAAETAFLLKQQLLEEEKLAKQQQEVLKGNYKKHEIVESVM 180

Query: 181 TDGTARRLAKCYDMRVFDD 196
           TDGTARRLAKCYDMRVFDD
Sbjct: 181 TDGTARRLAKCYDMRVFDD 199

[Close]

BLAST of MS000646 vs. ExPASy TrEMBL
Match: A0A6J1KVQ1 (uncharacterized protein LOC111498019 OS=Cucurbita maxima OX=3661 GN=LOC111498019 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.8e-79
Identity = 155/199 (77.89%), Postives = 174/199 (87.44%), Query Frame = 0


Query: 1   MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSS 60
           MGSAT+EQ+A FEEKVKRTVYVDNLSPQVTEPV+RTALDQFGTVV V FIPN+ EP+NSS
Sbjct: 1   MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 60

Query: 61  QCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAEVEMFDDRPIKPGSKISFSWL 120
           QCALVEMKDSKEA SVISVI++FPFM+SGMPRPVRA PAEVEMFDDRPIKPG KISF WL
Sbjct: 61  QCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 120

Query: 121 DQNDPDFQVAKKMKLFTRKHAAETL----AQGMKEEKLAKQQQEVLKGNYKKHEIVESVM 180
            + DPDF+VAKKMK  T++H AE       Q ++EEKLAKQQQ+ LKGNYKK+EI+E VM
Sbjct: 121 GKEDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKGNYKKYEILEGVM 180

Query: 181 TDGTARRLAKCYDMRVFDD 196
           TDGTARRLA+ Y+MRV DD
Sbjct: 181 TDGTARRLARRYNMRVADD 199

[Close]

BLAST of MS000646 vs. ExPASy TrEMBL
Match: A0A6J1H6P8 (uncharacterized protein LOC111460615 OS=Cucurbita moschata OX=3662 GN=LOC111460615 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.4e-78
Identity = 154/199 (77.39%), Postives = 173/199 (86.93%), Query Frame = 0


Query: 1   MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSS 60
           MGSAT+EQ+  FEEKVKRTVYVDNLSPQVTEPV+RTALDQFGTVV V FIPN+ EP+NSS
Sbjct: 1   MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 60

Query: 61  QCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAEVEMFDDRPIKPGSKISFSWL 120
           QCALVEMKDSKEA SVIS+IA+FPFM+SGMPRPVRA PAEVEMFDDRPIKPG KISF WL
Sbjct: 61  QCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 120

Query: 121 DQNDPDFQVAKKMKLFTRKHAAETL----AQGMKEEKLAKQQQEVLKGNYKKHEIVESVM 180
            ++DPDF+VAKKMK  T++H AE       Q ++EEKLAKQQQ+ LK NYKK+EIVE VM
Sbjct: 121 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 180

Query: 181 TDGTARRLAKCYDMRVFDD 196
           TDGTARRLA+ Y+MRV DD
Sbjct: 181 TDGTARRLARRYNMRVADD 199

[Close]

BLAST of MS000646 vs. ExPASy TrEMBL
Match: A0A1S3B3J3 (uncharacterized protein LOC103485592 OS=Cucumis melo OX=3656 GN=LOC103485592 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.8e-78
Identity = 154/199 (77.39%), Postives = 175/199 (87.94%), Query Frame = 0


Query: 1   MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSS 60
           MGSA +EQF+ FEEKVKRTVYVDNLSPQVTEPV+RTALDQFGTVV V FIPNY EP+NSS
Sbjct: 1   MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSS 60

Query: 61  QCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAEVEMFDDRPIKPGSKISFSWL 120
           QCALVEMKDSKEAKSVI+VIA+FPFM+SGMPRPVRA PAE EMFDDRP+KPG KISF WL
Sbjct: 61  QCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAEAEMFDDRPVKPGRKISFRWL 120

Query: 121 DQNDPDFQVAKKMKLFTRKHAAET---LAQGM-KEEKLAKQQQEVLKGNYKKHEIVESVM 180
           + +DPDF+VA+++K  T+KH AE    L Q + +EEKLAKQQQE L+GNYKK+EIV+SVM
Sbjct: 121 ESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVM 180

Query: 181 TDGTARRLAKCYDMRVFDD 196
            DGTARRLAK Y+MRV DD
Sbjct: 181 ADGTARRLAKNYNMRVSDD 199

[Close]

BLAST of MS000646 vs. ExPASy TrEMBL
Match: A0A0A0KAE7 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013320 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 3.4e-77
Identity = 153/199 (76.88%), Postives = 174/199 (87.44%), Query Frame = 0


Query: 1   MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSS 60
           MGS  +EQFA FEEKVKRTVYVDNLS QVTEPV+RTALDQFGTVV V FIPNY EP+NSS
Sbjct: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60

Query: 61  QCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAEVEMFDDRPIKPGSKISFSWL 120
           QCALVEMKDSKEAKSVI+VIA+FPFM+SGMPRPVRA PAEVEMFDDRP+KPG KISF WL
Sbjct: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120

Query: 121 DQNDPDFQVAKKMKLFTRKHAAET---LAQGM-KEEKLAKQQQEVLKGNYKKHEIVESVM 180
           + +DPDF+VA+++K  ++KH AE    + Q M +EEKLAKQQQE LKGNYKK+EIV+SVM
Sbjct: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180

Query: 181 TDGTARRLAKCYDMRVFDD 196
            DGTARRLAK Y+MR+ DD
Sbjct: 181 ADGTARRLAKHYNMRISDD 199

[Close]

BLAST of MS000646 vs. TAIR 10
Match: AT1G05970.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 174.9 bits (442), Expect = 6.5e-44
Identity = 90/197 (45.69%), Postives = 132/197 (67.01%), Query Frame = 0


Query: 1   MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSS 60
           M +  E  +  F E+V+RTVYVD L+P  T PV+ +A +QFGTV +V FIPNY+ P    
Sbjct: 1   MATPEEVAYEKFLERVRRTVYVDELTPLATAPVISSAFNQFGTVKKVSFIPNYLGPKELP 60

Query: 61  QCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAEVEMFDDRPIKPGSKISFSWL 120
              LVEM++ +  ++VIS +++ PFM++GMPRPVRA  AE  MF D+P KPG  + F W+
Sbjct: 61  MGVLVEMENEEMTQAVISTVSQLPFMVAGMPRPVRACAAEPNMFVDKPKKPGRTVRFRWI 120

Query: 121 DQNDPDFQVAKKMKLFTRKHAAET---LAQGMKE-EKLAKQQQEVLKGNYKKHEIVESVM 180
             NDPDF  A+++K   RKH+AE    L + ++E EKL+KQQ E    ++KK E+++ ++
Sbjct: 121 KPNDPDFDKARRVKRLARKHSAENSFMLKKQLEEAEKLSKQQAETAVTHHKKFEMMDKLL 180

Query: 181 TDGTARRLAKCYDMRVF 194
            DG A++LA  YD++ F
Sbjct: 181 YDGVAQKLAGRYDLKGF 197

[Close]

BLAST of MS000646 vs. TAIR 10
Match: AT1G05970.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 174.5 bits (441), Expect = 8.4e-44
Identity = 88/195 (45.13%), Postives = 130/195 (66.67%), Query Frame = 0


Query: 1   MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSS 60
           M +  E  +  F E+V+RTVYVD L+P  T PV+ +A +QFGTV +V FIPNY+ P    
Sbjct: 1   MATPEEVAYEKFLERVRRTVYVDELTPLATAPVISSAFNQFGTVKKVSFIPNYLGPKELP 60

Query: 61  QCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAEVEMFDDRPIKPGSKISFSWL 120
              LVEM++ +  ++VIS +++ PFM++GMPRPVRA  AE  MF D+P KPG  + F W+
Sbjct: 61  MGVLVEMENEEMTQAVISTVSQLPFMVAGMPRPVRACAAEPNMFVDKPKKPGRTVRFRWI 120

Query: 121 DQNDPDFQVAKKMKLFTRKHAAET--LAQGMKEEKLAKQQQEVLKGNYKKHEIVESVMTD 180
             NDPDF  A+++K   RKH+AE   + +  + EKL+KQQ E    ++KK E+++ ++ D
Sbjct: 121 KPNDPDFDKARRVKRLARKHSAENSFMLKLEEAEKLSKQQAETAVTHHKKFEMMDKLLYD 180

Query: 181 GTARRLAKCYDMRVF 194
           G A++LA  YD++ F
Sbjct: 181 GVAQKLAGRYDLKGF 195

The following BLAST results are available for this feature:

BLAST of MS000646 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150340.1	1.8e-96	94.47	uncharacterized protein LOC111018537 [Momordica charantia] >XP_022150341.1 uncha...	[more]
XP_038886330.1	9.0e-80	79.40	uncharacterized protein LOC120076542 [Benincasa hispida]	[more]
KAG6592987.1	4.4e-79	78.39	hypothetical protein SDJN03_12463, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7025396.1	4.4e-79	78.39	hypothetical protein SDJN02_11891, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023514768.1	4.4e-79	78.39	uncharacterized protein LOC111778981 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS000646 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS000646 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DB90	8.7e-97	94.47	uncharacterized protein LOC111018537 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1KVQ1	2.8e-79	77.89	uncharacterized protein LOC111498019 OS=Cucurbita maxima OX=3661 GN=LOC111498019...	[more]
A0A6J1H6P8	1.4e-78	77.39	uncharacterized protein LOC111460615 OS=Cucurbita moschata OX=3662 GN=LOC1114606...	[more]
A0A1S3B3J3	1.8e-78	77.39	uncharacterized protein LOC103485592 OS=Cucumis melo OX=3656 GN=LOC103485592 PE=...	[more]
A0A0A0KAE7	3.4e-77	76.88	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013320 PE=4 SV...	[more]

BLAST of MS000646 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05970.2	6.5e-44	45.69	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G05970.1	8.4e-44	45.13	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 19..97 e-value: 0.0025 score: 27.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 20..78 e-value: 3.4E-7 score: 30.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 18..101 score: 10.735407
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 19..95 e-value: 2.0E-11 score: 45.6
None	No IPR available	PANTHER	PTHR36309	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 6..194
None	No IPR available	CDD	cd00590	RRM_SF	coord: 20..78 e-value: 6.1719E-8 score: 46.1441
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 14..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000646.1	MS000646.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding