MS000609 (gene) Bitter gourd (TR) v1

Overview


Name	MS000609
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	U2 snRNP auxiliary factor large subunit
Location	scaffold93: 314442 .. 323059 (-)
RNA-Seq Expression	MS000609
Synteny	MS000609

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGATTACGACGGGAGATACGAAGGTAATGGAGAAGACACGGACAATTATGGCGATGGTTTTTCTCCCCAAGTTCGTGGCGGCAGCCATGGTGGCCACGATACTCACAGTGATTCAAAATCTCAGGTATTTTACTCACACTCAAATAATACGTGCATAATTCATTTGTTGTTTTACGGTTCTGCTCTGATTTTGGGAATCGATGGTGGTGCTCCTAAGCTGAAATTTTTCGGATTGCAAATTCAAGTTTATTGTCATATTCTTAGTTTTAGTCATCAGTGGGACTGTTGAAGTTCGATATTCTGTCGTGGTTTGAACTTTTTGAGTATTCTGAAGGACTGAAACATCGTCTTCAAGTTAATTCTCCGAGACTTTAAAGGGAAAAAAAATTGGGAGACTGATTTAGCTTGCGGTTAGGCAATTGGGTCGATAGTAGGAGTTGGATCTGTTTCGGCTATGTACATCTTTTCTCAAGAATCTAAAAGACTGTAAGATCTTGGGAGTTGAGAACTGGTAGATTTAATTGTATTTTACGTAAAATAGTTTTCTATGTTTTCTTTGATTGAATATGTATTTTTTATCAGTGCACATATAGCAAGTGAAATTTAGAGCAATTGGTGTTTCAACTGTTAGTAGATCCCCTGCCCTGACGTAGTGTTCTTGAACTTGCGACCATAGTTTCATAGCAATTAGAAGACCGTTGGCTAGCGTTGGTTGTTAGTTGTCTGTTATGTTGATTAATGATCAGATATGATATTGTTAGTTCCATTTACATGTGTCTAGTTCCTGGGATTGACATTGTAACGGTCTGATGGAATGAAATTTAATGAGTATGATTTTTTTGCTACAATTCTGCACCACCTCTCAATAGGTCTTCTTAGACTTATATGGCCAGCAAGCTATGTGATATGTGTTTTCTGGTTAAAGTTGTGTTGTAACATAAGTTTTATCTTTTACGTCCTGTCTCCATGGTATTTTTTTAACCTTACACAATGATTATTGTTATGATTATATTGTTTCTTGCTCCATCGAAATAAATTGCTAAAGTGATGCATTGTTCATGTCAAATGATTTGTTCTTCTTGTTCACTTGGTAAGTGTATGCTATTCCCATGTTAGCTTTTCTGTGAGAATCTGCAGTTAAATTTACTTTATTAATCTGAATGCTCTCATAAACGATGGAACATTGAGAAAATATCGTGAATGTTATTCTTTTGCAGCATGGTTCTTGTAAGTGCTATTCTGAGACACTGTCCTTTTTTTTGCATCATATAGAACAAATGAAACAAAAGTTTAACAGATGAGGAAAATACCTCTATTTGTGGGTTCAAATTTGTTTTCGTAGCTGCTACTTGGTTTAAACACAACAAGTTTTTTTGGGCAGCTATACAGTAATTGAAAGTCATTCTCGTATTCTCTTTCGTAGCTTGGGTTGAGACTTTCCTTCCTCTCATTTTTATAGTTCATTTTATGAATGAAATAGTTTCTTATAGAATAAGTGATAAAATCAGAATCTTACCGATGTACTATTCTTTTGCAGCATGGTTCTCGAGATTATGAAAGAGAGTCTTCAAAAAGTCGGGATAAAGAAAGAGAAAAGGGGCGTGATAGGGAGAAGGACAGGGAGAGAGATCGGGGTCGAGGTAGAGAAAGGGATAGGGAGAAAAGTAAGGATGGGGAAAGGGACCGGGAGAAGGATAGGGATAGGGATCGTGAGAAGGACCGTGATAGGGATCGTGACCGTCATCACAGAGACCGTCACAGGGATCGAGGTGAGAGAAGGGAGGGAGGCAGAAGTAGAGATGACGATGATTACTACAGGAGTAGGGACTTTGATAGGTAATGCAAATTCAACATCATTGCTTTCTGCATACATTTTATAGTTCTACAGATAATGTGTTCTGTATTTATTTGCTCAGCTTGTTTTCCATAATGCATTCTGTTAGGAACCCGAATATACTAAACGAAACTAAGTAACTATATTGCAACATCAAAAGAGAAATTACAATACCAATAGCCTTTGGAGAGGGCTATCTCTCTCCTTAGAACTCTCTTAAGTTCTTCACCTTAAACTATTCTCCAAGGTGCCTTCCTTCCCTCCTACTACTTCTACTTATAACAAACTCACCCCTAACTAATTACTATAATGCCCCTAACTATAATAATAATACTATTCCCAAACTAACCCCAATAGGACTCTCACACATTCTTGGCTCTTACTTTTTGCACTTTAGAGCTCTTATGATGTGTCATTGTCATGTAGTGTTTAGAGAAACTTTATGTGGCATGCCAACACTTTTTTTGGGTTAAAATTACTTTCACCAAGGAGGTAATAGCAAATAAATTGGTCTGTTTCATGTACAGGCGGAGAGATTATGATAAAGACCGAGAAGACAGACATAGACGTAGATCTCGTTCTCGCTCAAAGGGAATATCTGAGCATAGGTCAAGGTCACCTTCTCCATCACGGTCAAGATCACGATCCAAAAGGTTGGTTATGGAAGTCAATAGCTTTATTTTTCTTTTATATTGTTATTCTGTGCATCTATCTGAAGTTTATGGGTTGAAAATTGAAATTTAGTAGGTTTTAATATTATGACTCTTTACTGTAATTATATGCTGAACGGAGGGGCTTTCCCTTTGTATTTTGGGTTTAGGTTTGGCATGCGGGTAAATGTGAGCTGCAAGAATATGTTTAGAAGCCGTTGATTAATATGTTGTTATTTAGGTCAACTGTATGGTTTTTGTTGAAATTTTGTAGCACTGTTTGTAGTTATTGTTTGTAATGTTAAAGATTGACTTGTTATGGTTCTCTGGCATTTCTCCAACTGCATTTATTTTTTTGCAATTTCCACACATTGAAAAATTACTAATATTATATTCCCGTGTTAATAATGATGATAGTGAGAATACTATTTTGTGTAGGTCAGTATTCCACGAAGAAAGTAGTGAAGGTCATGTGGGAGAACTGTATTTTTTGTTCTCTCTTGGAGTTCCTTTCATCACGAGTTTTGTAATTATGGTCTTTCTTTGATTTGTACCAATTGATGAAGAGGCCTTTGCCTCATGTATTTCCTTCGTTCAATGAATTTTTTTTCTTATTATTTTTTTTTTAAATTTGAACAGAAAAATGATAAGAACATTAGTTAGTATGTGGAATGCTTTGAAATATTTGTCTGTTGTTTCAATTTTAGGAGGTGTATAGTTAAGAGTTCCATTTTCCTCTGGACCATAAATAATTGTTATTTTATTCTTTTAAGTTGTCATGGTTCTATAAGGGATGTTCATACCTTGTATTTGAGTTGTGTTAGGTGTATTGAGTGTCATTTTTCTAAAAGCAAGTTATATGGTTTGGAATCGTACAGCATTCTAACGTGAGCGACAGGTTATCTTTATTTGCTTTTGTAAGTGCTCCATAAGTTACATATATTCCCACACTGTTTGTAGTTTAAGTTGAATTTCTTCTTCATCATACAGGTTGTGTGTGCTCTCCCTAACTATGAGATTTCATGGTTCAGTGCCTTTCTACTTGTTTGGTCTTTGAACTTGTTATGCTGACATCCCTTTATCCGCAGCAAAAGAATTAGTGGTTTTGACATGGCTCCTCCCACTACTGCAATATTGCCTGGTGCAACTGCTGCTGCAGGTACCTAAATCCTCGCACACTGGAATATCCCTTTGTATTATTTAACTGCTTTTCTTTGTTGGATATAGTGTGGAAAGTTGACAACAAATTGCATGGTGTCATTGGGTAAGCTATATTTTGTTCCTTCATCAGCATATGTAACCGTTTAAAAATGTGGTCTTTGGATGGGCTATATAATTATTTATTATTTACTTGGTACACTCATTCTGGAACTGAGAGGTATTTTGGTTTTTTGTTGCTTGTGTTTGGTGTTTGTTTGTTGTTTTGTTTCTATGTATCGTCCAATGTTGTGAGAAGACAATGTTGGGCTACTTGCCCCTCTGTGCCGACAATGGGCGTGAGCTGACTTCTGTAGCTTTTATATGCAAGAAGGACCAATGCACGGGTTAGATGGATCTTGTTCGTCCTCATCTGGAAACTTATTCCTTTTTTGGTAGTCTTACAAATATTACTCAGAATTTGTACATGTATAAAATTTTTATGCTTAAAAAATTTATTGGAAGAGACTAAGTTATACACCATATTGTGTTTCATGAAGCATCAAGTAGGTTCAGGTGATACTTGAAATATTATGCGTGTGCCAATGTTACTGGGTTGAATTGTGATTATTTTCTGAGATTTAGCCTAATTTCTTTAGCAGGCCAGATGCCTGGGGCAACTCCAGCTATTCCTGGAATGTTTCCTACGATGTTTCCATTGGCAACGGGTCAGGTAATTCTGCTTCTCCCCTAGTAAGAAGAATGGAATGATACAAAATCTCAAAGCAAATGACATACCAATAATTTGATAGTATGTATGTATTGATCATATTTTACCTCGTTTTGCCATTTATTTGTTTTCATACAGCCCTTTGGAGCACTTCCTGTTATGCCAGTTCAGGCAATGACCCAACAGGTAATCATTTAGTGCCTTGTACCTCTCCTTGTAATTTGACGAACCTGAAAAACTGTGGTATGTGTTTGTTTTCAGGCTACCAGGCATGCCCGGCGTGTTTATGTGGGAGGGCTACCCCCAACAGCCAATGAACAGGTTTTTGTTGCACCTCTTGTCTCTCTTATTTGATTGGCATTTTATTAGATTTTTTAATTGAACTGCGTATCTTCATTTATATTCTTGTTTTGGAGTTCTATGCCATTCATGCATCCAGGTGTGGTTCCTTAGCTAATTTGATTGTGAAAGTTTTGGTTTTCATTAATATTATGACTCTGTATCAACAAATATTAAATATCGTCATATCTGTGTTGACTTTACTATGGAAAATTTTGAAGAACTTTTGTTTGGGTAGTCTTTCTTTCTCGAGTGTATTGGCGTATTTTTTTCTATTTATTTGCCAGGTTTTTTAGTTAATTGGTTAAGACATACTGGAAACATTTTTCCATATAGCAGGATACCATATTTTATTCACAAAGTTCATTGTTGTTTGCAGTCTGTTGCAACATTTTTCAGTCAGGTTATGGCTGCAATAGGAGGAAACACCGCTGGTCCTGGTATGGTGATTTTTCAATTTCTATTTGACACGTTTATCTTGGTGGTTCTTATTGCCATGTCAAGTTAATCAACTTGTATGATGATCGTCCATCATTTATAGGAGATGCGGTTGTCAATGTTTACATAAATCATGAGAAAAAGTTTGCATTTGTGGAGATGAGATCTGTTGAGGAAGCCAGCAATGCAATGGCCTTGGATGGGATCATCTTTGAGGTACTTAGTTTTGTTGTCGATTATTTCGTGTACATATCTTATGTTCGAACAAAAATTATCCAGGAAAATAAATGTCTAATTTGTTACTTTTTCTGAATTAGGGAGCGCCTGTTAAGGTGCGAAGACCTAGTGATTACAATCCTTCACTTGCGGCAACACTTGGTCCCAGCCAGCCGAATCCAAATCTGAACCTAGCTGCTGTTGGCCTAACACCAGGTTCTGCTGGTGGTCTCGAGGGGCCAGACCGCATTTTTGTGGGTGGACTTCCTTATTACTTCACAGAAGCTCAGGTCAGAGAGTTGCTGGAGTCTTTTGGGCCCCTACGAGGTTTTGATCTGGTGAAAGATAGAGAGACTGGAAATTCTAAAGGCTACGCATTTTGTGTTTACCAAGATCTTTCAGTCACAGACATAGCCTGTGCAGCCCTCAATGGTATTAAAATGGGTGACAAGACACTCACGGTTCGGCGTGCGAATCAGGGAGCTAACCAACCGAAACCAGAACAAGAAAGTGTCCTTTTGCATGCACAGCAGCAAATTGCACTGCAGGTGAGTGAAAGTTTCTGGCTTTTCCTGTATAACTTATGTGGTTTTGTAAATGAATTCCACGTGCATGTGCCATATTCCAACAAAACAAATTATGATAGGCATATATGATTGAAATCTCGTCATATAATATAGTCTTTTATATTTCACTCACGGATATAAAAGACATATAATCTTCATATTTCAACCGAGAAACTTAAGGAAAATTGATAACTGCATATTTGCATCAAGCTTGTTTTATCTAACCTTTTGCTTCAACCAGCATGCAGACGGGTTCTTTGGAGTGACCCGATGGACGGAAAATGCTTAGTATATTCTAAACTTGTTAATTTATTTTAAAAGGAATAGAATATCCCAATACTTGAGTGGTAAATGACCAATAGAATATACTTTTTATTTGCATTACAGGTACTTGGTAATGTGAGCATGAATGAATCAATAAGTATAAGACCTGAAATATGTATTGAACGTAGGTTTGCTAGTGTGCTGTGAGTATCACAAAAAATCTAGGCTCAGCATGTTAGAGAAAGTTGGAGGTGGTTTAATGAAATACTTTCTATTAGAGTATTGTCAGGGCATGTTTGGGAGTGGTTTTGGCTAGATCACTTTCATTTTAAAATAGACATGTTTGGCAATGATTCATGAAATCACTTTAAGTGATTCCGGATCAATCACTTGGGAGGTAATTCTCCAAGTGACTTTCGGTAAAAATTTAAGTTAAAAAGAAAAATTAACTTTTGAAATGGTTATTGTTTTAAATTTCAAATTTTTCCTTTCTATTTCACCTTAAATTTTGAGAAAATAAGAAAATTATTTTTTTCTTTCTAAAATTTTTGTTGCTCTCTAACTTTATTTATCTTTAATTTTGTTTCTCTAAACTTTTTAATATCTCTCAATTTCTAGTCTCCTCTATCTAAGTTTATTTCTCTCTAAAATTATTGAGATTTATTATTTAGTTATATATATCATGTTTTTCAGTCTAATTACTTCATAATTGGTGTTAAATATTGTAATTACTTAATAAATGATGTTAAATAAATTTTCAAATGTATGTTATTAATTTGGTAATTCTAGAATTACTTTTGAAATCAAACATTAGTCTTTTTAATTACTTTAAAAATATTAAATAATAATAATTTTTTTGGTAAGTAAGTATGGCATTGATGATATGAAATATACAAAAGAGCTCATAGGGCTGATTACAAAAAGACCTTGAAATAATTATATAAGAATCGCTTTCACAAAAATCACTAATTCCAAAATCATTTCAAACATGCCCTTAATTTGGACTGATAGAAGTAGTTCTATAGCTTTGCTTTGGAATATTTGGAGGTAGAGAAATCAATAATGTTTTGGGGTGTTGTAGCCCCTTCTGATTATCTTTCAAATTTTCAGATAGTGTTCAGCTTACTATAATATCCTTATGGGTTTAAAACACAAGAAATTCTTTTGTAATTACAGCTTATCCTTGATCCTTCAAGATTGGAAAGCTTTGATTCACTAGCTTTTCGTCGGGAGGGGGCTTTCTCATCCCCCGGCCCTGAGGTTGTTCTTTTTTTTCTTTGTGTTTATTAAGTTTGTTTCTTATCCACAAAAAATTTTATTGGCCATATATCTTGTAGTATGGTAATTAATAACTGTGAAGTATTATCTTGGTGAATCATCGTCTTATTAAGCTTCTCTTGCAGAAGCTGATGCTACAGCCAGGGGCTGTATCCACCAAGGTTCTTTGTCTTACACAAGTTGTTTCTCCCGAAGAGCTTATTAATGACGAAGACTATGAAGATATCATGGAAGACATGCGAGGGGAAGGCGGAAAATTTGGTAAACTAATGCTTTGGTTGATTGTTTACCTCTCATCATGGATTCTATATTTTAGTTATGAACTTCAAGGCTTCATGCATACTTATCTGTTTCTTGTTTGTTTTTTGTGTGTGATATCTCTGTTTTACAGCCTTTTCTTGTCCTCACATTCTGGTAGAAAGAATCAGACAAATAACTTACAGACAGAAGCCTCCATAACCTTCTTATCTTTAGACCACCCACCTGATGTGTTTCTTAATCGATTTTGCAAATTTGTGGTTTCAAATGGTTTCATTATGTCTTTGCAGGTACACTAGTGAATGTTGTCATCCCACGTCCGAGACCCAACGATATGGCACCTGGAGTTGGAAAGGCATGAATTTCTTGCACCTTACACAACCATATTCTCCATTTTCTTTCCTTAGGAAATTAGTTTTTATCCTTTAGTTTCTTGGTCCTGCAAACAAGGGTTAGTAATGATATCTAGAATGATCGGATTAAAAGAGACGGTAAAATTGTGAAAATCTAATCTCAGCTTCCCTTTTCATTCACCATCCACTTAGATCTCTTCCGTTTCATCAAATTTGTCCTAGAAAAAAGGGATCCCTTCCCATTGTGGTTCTTGTTTGGTCCCCCCCCTTCGTTTCAAGAATAGTGTGGTTTTATTATGGTTGCTATTTACCTAGAATATTTACTACCCTATCAATTTTTTGACACCAAGAGGGTGTTCGTAAGCCTGCACGGACACTTAGATCTGATCTGTTCTCGTGGCTTAAATTGTAGCAGGTGTTTTTGGAGTATGCGGACATCGATAGTGCAACGAAAGCTCGAGCTGGTCTGAATGGAAGAAAATTTGGAGGGAACCAAGTGGTGGCTGTATTCTATCCAGAGAACAAGTTTGCCCAAGGGGAGTATGATGCC

mRNA sequence

ATGACAGATTACGACGGGAGATACGAAGGTAATGGAGAAGACACGGACAATTATGGCGATGGTTTTTCTCCCCAAGTTCGTGGCGGCAGCCATGGTGGCCACGATACTCACAGTGATTCAAAATCTCAGCATGGTTCTCGAGATTATGAAAGAGAGTCTTCAAAAAGTCGGGATAAAGAAAGAGAAAAGGGGCGTGATAGGGAGAAGGACAGGGAGAGAGATCGGGGTCGAGGTAGAGAAAGGGATAGGGAGAAAAGTAAGGATGGGGAAAGGGACCGGGAGAAGGATAGGGATAGGGATCGTGAGAAGGACCGTGATAGGGATCGTGACCGTCATCACAGAGACCGTCACAGGGATCGAGGTGAGAGAAGGGAGGGAGGCAGAAGTAGAGATGACGATGATTACTACAGGAGTAGGGACTTTGATAGGCGGAGAGATTATGATAAAGACCGAGAAGACAGACATAGACGTAGATCTCGTTCTCGCTCAAAGGGAATATCTGAGCATAGGTCAAGGTCACCTTCTCCATCACGGTCAAGATCACGATCCAAAAGCAAAAGAATTAGTGGTTTTGACATGGCTCCTCCCACTACTGCAATATTGCCTGGTGCAACTGCTGCTGCAGCAGGCCAGATGCCTGGGGCAACTCCAGCTATTCCTGGAATGTTTCCTACGATGTTTCCATTGGCAACGGGTCAGCCCTTTGGAGCACTTCCTGTTATGCCAGTTCAGGCAATGACCCAACAGGCTACCAGGCATGCCCGGCGTGTTTATGTGGGAGGGCTACCCCCAACAGCCAATGAACAGTCTGTTGCAACATTTTTCAGTCAGGTTATGGCTGCAATAGGAGGAAACACCGCTGGTCCTGGAGATGCGGTTGTCAATGTTTACATAAATCATGAGAAAAAGTTTGCATTTGTGGAGATGAGATCTGTTGAGGAAGCCAGCAATGCAATGGCCTTGGATGGGATCATCTTTGAGGGAGCGCCTGTTAAGGTGCGAAGACCTAGTGATTACAATCCTTCACTTGCGGCAACACTTGGTCCCAGCCAGCCGAATCCAAATCTGAACCTAGCTGCTGTTGGCCTAACACCAGGTTCTGCTGGTGGTCTCGAGGGGCCAGACCGCATTTTTGTGGGTGGACTTCCTTATTACTTCACAGAAGCTCAGGTCAGAGAGTTGCTGGAGTCTTTTGGGCCCCTACGAGGTTTTGATCTGGTGAAAGATAGAGAGACTGGAAATTCTAAAGGCTACGCATTTTGTGTTTACCAAGATCTTTCAGTCACAGACATAGCCTGTGCAGCCCTCAATGGTATTAAAATGGGTGACAAGACACTCACGGTTCGGCGTGCGAATCAGGGAGCTAACCAACCGAAACCAGAACAAGAAAGTGTCCTTTTGCATGCACAGCAGCAAATTGCACTGCAGAAGCTGATGCTACAGCCAGGGGCTGTATCCACCAAGGTTCTTTGTCTTACACAAGTTGTTTCTCCCGAAGAGCTTATTAATGACGAAGACTATGAAGATATCATGGAAGACATGCGAGGGGAAGGCGGAAAATTTGGTACACTAGTGAATGTTGTCATCCCACGTCCGAGACCCAACGATATGGCACCTGGAGTGTTTTTGGAGTATGCGGACATCGATAGTGCAACGAAAGCTCGAGCTGGTCTGAATGGAAGAAAATTTGGAGGGAACCAAGTGGTGGCTGTATTCTATCCAGAGAACAAGTTTGCCCAAGGGGAGTATGATGCC

Coding sequence (CDS)

ATGACAGATTACGACGGGAGATACGAAGGTAATGGAGAAGACACGGACAATTATGGCGATGGTTTTTCTCCCCAAGTTCGTGGCGGCAGCCATGGTGGCCACGATACTCACAGTGATTCAAAATCTCAGCATGGTTCTCGAGATTATGAAAGAGAGTCTTCAAAAAGTCGGGATAAAGAAAGAGAAAAGGGGCGTGATAGGGAGAAGGACAGGGAGAGAGATCGGGGTCGAGGTAGAGAAAGGGATAGGGAGAAAAGTAAGGATGGGGAAAGGGACCGGGAGAAGGATAGGGATAGGGATCGTGAGAAGGACCGTGATAGGGATCGTGACCGTCATCACAGAGACCGTCACAGGGATCGAGGTGAGAGAAGGGAGGGAGGCAGAAGTAGAGATGACGATGATTACTACAGGAGTAGGGACTTTGATAGGCGGAGAGATTATGATAAAGACCGAGAAGACAGACATAGACGTAGATCTCGTTCTCGCTCAAAGGGAATATCTGAGCATAGGTCAAGGTCACCTTCTCCATCACGGTCAAGATCACGATCCAAAAGCAAAAGAATTAGTGGTTTTGACATGGCTCCTCCCACTACTGCAATATTGCCTGGTGCAACTGCTGCTGCAGCAGGCCAGATGCCTGGGGCAACTCCAGCTATTCCTGGAATGTTTCCTACGATGTTTCCATTGGCAACGGGTCAGCCCTTTGGAGCACTTCCTGTTATGCCAGTTCAGGCAATGACCCAACAGGCTACCAGGCATGCCCGGCGTGTTTATGTGGGAGGGCTACCCCCAACAGCCAATGAACAGTCTGTTGCAACATTTTTCAGTCAGGTTATGGCTGCAATAGGAGGAAACACCGCTGGTCCTGGAGATGCGGTTGTCAATGTTTACATAAATCATGAGAAAAAGTTTGCATTTGTGGAGATGAGATCTGTTGAGGAAGCCAGCAATGCAATGGCCTTGGATGGGATCATCTTTGAGGGAGCGCCTGTTAAGGTGCGAAGACCTAGTGATTACAATCCTTCACTTGCGGCAACACTTGGTCCCAGCCAGCCGAATCCAAATCTGAACCTAGCTGCTGTTGGCCTAACACCAGGTTCTGCTGGTGGTCTCGAGGGGCCAGACCGCATTTTTGTGGGTGGACTTCCTTATTACTTCACAGAAGCTCAGGTCAGAGAGTTGCTGGAGTCTTTTGGGCCCCTACGAGGTTTTGATCTGGTGAAAGATAGAGAGACTGGAAATTCTAAAGGCTACGCATTTTGTGTTTACCAAGATCTTTCAGTCACAGACATAGCCTGTGCAGCCCTCAATGGTATTAAAATGGGTGACAAGACACTCACGGTTCGGCGTGCGAATCAGGGAGCTAACCAACCGAAACCAGAACAAGAAAGTGTCCTTTTGCATGCACAGCAGCAAATTGCACTGCAGAAGCTGATGCTACAGCCAGGGGCTGTATCCACCAAGGTTCTTTGTCTTACACAAGTTGTTTCTCCCGAAGAGCTTATTAATGACGAAGACTATGAAGATATCATGGAAGACATGCGAGGGGAAGGCGGAAAATTTGGTACACTAGTGAATGTTGTCATCCCACGTCCGAGACCCAACGATATGGCACCTGGAGTGTTTTTGGAGTATGCGGACATCGATAGTGCAACGAAAGCTCGAGCTGGTCTGAATGGAAGAAAATTTGGAGGGAACCAAGTGGTGGCTGTATTCTATCCAGAGAACAAGTTTGCCCAAGGGGAGTATGATGCC

Protein sequence

MTDYDGRYEGNGEDTDNYGDGFSPQVRGGSHGGHDTHSDSKSQHGSRDYERESSKSRDKEREKGRDREKDRERDRGRGRERDREKSKDGERDREKDRDRDREKDRDRDRDRHHRDRHRDRGERREGGRSRDDDDYYRSRDFDRRRDYDKDREDRHRRRSRSRSKGISEHRSRSPSPSRSRSRSKSKRISGFDMAPPTTAILPGATAAAAGQMPGATPAIPGMFPTMFPLATGQPFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQKLMLQPGAVSTKVLCLTQVVSPEELINDEDYEDIMEDMRGEGGKFGTLVNVVIPRPRPNDMAPGVFLEYADIDSATKARAGLNGRKFGGNQVVAVFYPENKFAQGEYDA

Homology

[Close]

BLAST of MS000609 vs. NCBI nr
Match: XP_022150448.1 (splicing factor U2af large subunit B-like isoform X3 [Momordica charantia])

HSP 1 Score: 1091.6 bits (2822), Expect = 0.0e+00
Identity = 585/588 (99.49%), Postives = 585/588 (99.49%), Query Frame = 0


Query: 1   MTDYDGRYEGNGEDTDNYGDGFSPQVRGGSHGGHDTHSDSKSQHGSRDYERESSKSRDKE 60
           MTDYDGRYEGNGEDTDNYGDGFSPQVRGGSHGGHDTHSDSKSQHGSRDYERESSKSRDKE
Sbjct: 1   MTDYDGRYEGNGEDTDNYGDGFSPQVRGGSHGGHDTHSDSKSQHGSRDYERESSKSRDKE 60

Query: 61  REKGRDREKDRERDRGRGRERDREKSKDGERDREKDRDRDREKDRDRDRDRHHRDRHRDR 120
           REKGRDREKDRERDRGRGRERDREKSKDGERDREKDRDRDREKDRDRDRDRHHRDRHRDR
Sbjct: 61  REKGRDREKDRERDRGRGRERDREKSKDGERDREKDRDRDREKDRDRDRDRHHRDRHRDR 120

Query: 121 GERREGGRSRDDDDYYRSRDFDRRRDYDKDREDRHRRRSRSRSKGISEHRSRSPSPSRSR 180
           GERREGGRSRDDDDYYRSRDFDRRRDYDKDREDRHRRRSRSRSKGISEHRSRSPSPSRSR
Sbjct: 121 GERREGGRSRDDDDYYRSRDFDRRRDYDKDREDRHRRRSRSRSKGISEHRSRSPSPSRSR 180

Query: 181 SRSKSKRISGFDMAPPTTAILPGATAAAAGQMPGATPAIPGMFPTMFPLATGQPFGALPV 240
           SRSKSKRISGFDMAPPTTAILPGATAAAAGQMPGATPAIPGMFPTMFPLATGQPFGALPV
Sbjct: 181 SRSKSKRISGFDMAPPTTAILPGATAAAAGQMPGATPAIPGMFPTMFPLATGQPFGALPV 240

Query: 241 MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH 300
           MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH
Sbjct: 241 MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH 300

Query: 301 EKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAA 360
           EKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAA
Sbjct: 301 EKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAA 360

Query: 361 VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAF 420
           VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAF
Sbjct: 361 VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAF 420

Query: 421 CVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQKLML 480
           CVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQKLML
Sbjct: 421 CVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQKLML 480

Query: 481 QPGAVSTKVLCLTQVVSPEELINDEDYEDIMEDMRGEGGKFGTLVNVVIPRPRPNDMAPG 540
           QPGAVSTKVLCLTQVVSPEELINDEDYEDIMEDMRGEGGKFGTLVNVVIPRPRPNDMAPG
Sbjct: 481 QPGAVSTKVLCLTQVVSPEELINDEDYEDIMEDMRGEGGKFGTLVNVVIPRPRPNDMAPG 540

Query: 541 ---VFLEYADIDSATKARAGLNGRKFGGNQVVAVFYPENKFAQGEYDA 586
              VFLEYADIDSATKARAGLNGRKFGGNQVVAVFYPENKFAQGEYDA
Sbjct: 541 VGKVFLEYADIDSATKARAGLNGRKFGGNQVVAVFYPENKFAQGEYDA 588

[Close]

BLAST of MS000609 vs. NCBI nr
Match: XP_022150450.1 (splicing factor U2af large subunit B-like isoform X4 [Momordica charantia])

HSP 1 Score: 1085.9 bits (2807), Expect = 0.0e+00
Identity = 584/588 (99.32%), Postives = 584/588 (99.32%), Query Frame = 0


Query: 1   MTDYDGRYEGNGEDTDNYGDGFSPQVRGGSHGGHDTHSDSKSQHGSRDYERESSKSRDKE 60
           MTDYDGRYEGNGEDTDNYGDGFSPQVRGGSHGGHDTHSDSKSQHGSRDYERESSKSRDKE
Sbjct: 1   MTDYDGRYEGNGEDTDNYGDGFSPQVRGGSHGGHDTHSDSKSQHGSRDYERESSKSRDKE 60

Query: 61  REKGRDREKDRERDRGRGRERDREKSKDGERDREKDRDRDREKDRDRDRDRHHRDRHRDR 120
           REKGRDREKDRERDRGRGRERDREKSKDGERDREKDRDRDREKDRDRDRDRHHRDRHRDR
Sbjct: 61  REKGRDREKDRERDRGRGRERDREKSKDGERDREKDRDRDREKDRDRDRDRHHRDRHRDR 120

Query: 121 GERREGGRSRDDDDYYRSRDFDRRRDYDKDREDRHRRRSRSRSKGISEHRSRSPSPSRSR 180
           GERREGGRSRDDDDYYRSRDFDRRRDYDKDREDRHRRRSRSRSKGISEHRSRSPSPSRSR
Sbjct: 121 GERREGGRSRDDDDYYRSRDFDRRRDYDKDREDRHRRRSRSRSKGISEHRSRSPSPSRSR 180

Query: 181 SRSKSKRISGFDMAPPTTAILPGATAAAAGQMPGATPAIPGMFPTMFPLATGQPFGALPV 240
           SRSKSKRISGFDMAPPTTAILPGAT AAAGQMPGATPAIPGMFPTMFPLATGQPFGALPV
Sbjct: 181 SRSKSKRISGFDMAPPTTAILPGAT-AAAGQMPGATPAIPGMFPTMFPLATGQPFGALPV 240

Query: 241 MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH 300
           MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH
Sbjct: 241 MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH 300

Query: 301 EKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAA 360
           EKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAA
Sbjct: 301 EKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAA 360

Query: 361 VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAF 420
           VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAF
Sbjct: 361 VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAF 420

Query: 421 CVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQKLML 480
           CVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQKLML
Sbjct: 421 CVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQKLML 480

Query: 481 QPGAVSTKVLCLTQVVSPEELINDEDYEDIMEDMRGEGGKFGTLVNVVIPRPRPNDMAPG 540
           QPGAVSTKVLCLTQVVSPEELINDEDYEDIMEDMRGEGGKFGTLVNVVIPRPRPNDMAPG
Sbjct: 481 QPGAVSTKVLCLTQVVSPEELINDEDYEDIMEDMRGEGGKFGTLVNVVIPRPRPNDMAPG 540

Query: 541 ---VFLEYADIDSATKARAGLNGRKFGGNQVVAVFYPENKFAQGEYDA 586
              VFLEYADIDSATKARAGLNGRKFGGNQVVAVFYPENKFAQGEYDA
Sbjct: 541 VGKVFLEYADIDSATKARAGLNGRKFGGNQVVAVFYPENKFAQGEYDA 587

[Close]

BLAST of MS000609 vs. NCBI nr
Match: XP_022150446.1 (splicing factor U2af large subunit B-like isoform X1 [Momordica charantia])

HSP 1 Score: 1076.6 bits (2783), Expect = 0.0e+00
Identity = 585/616 (94.97%), Postives = 585/616 (94.97%), Query Frame = 0


Query: 1   MTDYDGRYEGNGEDTDNYGDGFSPQVRGGSHGGHDTHSDSKSQHGSRDYERESSKSRDKE 60
           MTDYDGRYEGNGEDTDNYGDGFSPQVRGGSHGGHDTHSDSKSQHGSRDYERESSKSRDKE
Sbjct: 1   MTDYDGRYEGNGEDTDNYGDGFSPQVRGGSHGGHDTHSDSKSQHGSRDYERESSKSRDKE 60

Query: 61  REKGRDREKDRERDRGRGRERDREKSKDGERDREKDRDRDREKDRDRDRDRHHRDRHRDR 120
           REKGRDREKDRERDRGRGRERDREKSKDGERDREKDRDRDREKDRDRDRDRHHRDRHRDR
Sbjct: 61  REKGRDREKDRERDRGRGRERDREKSKDGERDREKDRDRDREKDRDRDRDRHHRDRHRDR 120

Query: 121 GERREGGRSRDDDDYYRSRDFDRRRDYDKDREDRHRRRSRSRSKGISEHRSRSPSPSRSR 180
           GERREGGRSRDDDDYYRSRDFDRRRDYDKDREDRHRRRSRSRSKGISEHRSRSPSPSRSR
Sbjct: 121 GERREGGRSRDDDDYYRSRDFDRRRDYDKDREDRHRRRSRSRSKGISEHRSRSPSPSRSR 180

Query: 181 SRSKSKRISGFDMAPPTTAILPGATAAAAGQMPGATPAIPGMFPTMFPLATGQPFGALPV 240
           SRSKSKRISGFDMAPPTTAILPGATAAAAGQMPGATPAIPGMFPTMFPLATGQPFGALPV
Sbjct: 181 SRSKSKRISGFDMAPPTTAILPGATAAAAGQMPGATPAIPGMFPTMFPLATGQPFGALPV 240

Query: 241 MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH 300
           MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH
Sbjct: 241 MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH 300

Query: 301 EKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAA 360
           EKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAA
Sbjct: 301 EKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAA 360

Query: 361 VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAF 420
           VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAF
Sbjct: 361 VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAF 420

Query: 421 CVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQ---- 480
           CVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQ    
Sbjct: 421 CVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQLILD 480

Query: 481 ------------------------KLMLQPGAVSTKVLCLTQVVSPEELINDEDYEDIME 540
                                   KLMLQPGAVSTKVLCLTQVVSPEELINDEDYEDIME
Sbjct: 481 PSRLESFDSLAFRREGAFSSPGPEKLMLQPGAVSTKVLCLTQVVSPEELINDEDYEDIME 540

Query: 541 DMRGEGGKFGTLVNVVIPRPRPNDMAPG---VFLEYADIDSATKARAGLNGRKFGGNQVV 586
           DMRGEGGKFGTLVNVVIPRPRPNDMAPG   VFLEYADIDSATKARAGLNGRKFGGNQVV
Sbjct: 541 DMRGEGGKFGTLVNVVIPRPRPNDMAPGVGKVFLEYADIDSATKARAGLNGRKFGGNQVV 600

[Close]

BLAST of MS000609 vs. NCBI nr
Match: XP_022150447.1 (splicing factor U2af large subunit B-like isoform X2 [Momordica charantia])

HSP 1 Score: 1070.8 bits (2768), Expect = 4.0e-309
Identity = 584/616 (94.81%), Postives = 584/616 (94.81%), Query Frame = 0


Query: 1   MTDYDGRYEGNGEDTDNYGDGFSPQVRGGSHGGHDTHSDSKSQHGSRDYERESSKSRDKE 60
           MTDYDGRYEGNGEDTDNYGDGFSPQVRGGSHGGHDTHSDSKSQHGSRDYERESSKSRDKE
Sbjct: 1   MTDYDGRYEGNGEDTDNYGDGFSPQVRGGSHGGHDTHSDSKSQHGSRDYERESSKSRDKE 60

Query: 61  REKGRDREKDRERDRGRGRERDREKSKDGERDREKDRDRDREKDRDRDRDRHHRDRHRDR 120
           REKGRDREKDRERDRGRGRERDREKSKDGERDREKDRDRDREKDRDRDRDRHHRDRHRDR
Sbjct: 61  REKGRDREKDRERDRGRGRERDREKSKDGERDREKDRDRDREKDRDRDRDRHHRDRHRDR 120

Query: 121 GERREGGRSRDDDDYYRSRDFDRRRDYDKDREDRHRRRSRSRSKGISEHRSRSPSPSRSR 180
           GERREGGRSRDDDDYYRSRDFDRRRDYDKDREDRHRRRSRSRSKGISEHRSRSPSPSRSR
Sbjct: 121 GERREGGRSRDDDDYYRSRDFDRRRDYDKDREDRHRRRSRSRSKGISEHRSRSPSPSRSR 180

Query: 181 SRSKSKRISGFDMAPPTTAILPGATAAAAGQMPGATPAIPGMFPTMFPLATGQPFGALPV 240
           SRSKSKRISGFDMAPPTTAILPGAT AAAGQMPGATPAIPGMFPTMFPLATGQPFGALPV
Sbjct: 181 SRSKSKRISGFDMAPPTTAILPGAT-AAAGQMPGATPAIPGMFPTMFPLATGQPFGALPV 240

Query: 241 MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH 300
           MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH
Sbjct: 241 MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH 300

Query: 301 EKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAA 360
           EKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAA
Sbjct: 301 EKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAA 360

Query: 361 VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAF 420
           VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAF
Sbjct: 361 VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAF 420

Query: 421 CVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQ---- 480
           CVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQ    
Sbjct: 421 CVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQLILD 480

Query: 481 ------------------------KLMLQPGAVSTKVLCLTQVVSPEELINDEDYEDIME 540
                                   KLMLQPGAVSTKVLCLTQVVSPEELINDEDYEDIME
Sbjct: 481 PSRLESFDSLAFRREGAFSSPGPEKLMLQPGAVSTKVLCLTQVVSPEELINDEDYEDIME 540

Query: 541 DMRGEGGKFGTLVNVVIPRPRPNDMAPG---VFLEYADIDSATKARAGLNGRKFGGNQVV 586
           DMRGEGGKFGTLVNVVIPRPRPNDMAPG   VFLEYADIDSATKARAGLNGRKFGGNQVV
Sbjct: 541 DMRGEGGKFGTLVNVVIPRPRPNDMAPGVGKVFLEYADIDSATKARAGLNGRKFGGNQVV 600

[Close]

BLAST of MS000609 vs. NCBI nr
Match: XP_022929824.1 (splicing factor U2af large subunit A-like isoform X4 [Cucurbita moschata])

HSP 1 Score: 1055.8 bits (2729), Expect = 1.3e-304
Identity = 562/588 (95.58%), Postives = 576/588 (97.96%), Query Frame = 0


Query: 1   MTDYDGRYEGNGEDTDNYGDGFSPQVRGGSHGGHDTHSDSKSQHGSRDYERESSKSRDKE 60
           MTDYDGRYEGNGED DNYGDGFSPQ RGGSHGGHDTHSDSKSQHGSR+YERESSKSR+KE
Sbjct: 1   MTDYDGRYEGNGEDADNYGDGFSPQARGGSHGGHDTHSDSKSQHGSREYERESSKSREKE 60

Query: 61  REKGRDREKDRERDRGRGRERDREKSKDGERDREKDRDRDREKDRDRDRDRHHRDRHRDR 120
           R+KGRDREKDRERDR RGRERDREKSKDGERDREKDR+RDR+KDRDRDRDRHHRDRHRDR
Sbjct: 61  RDKGRDREKDRERDRDRGRERDREKSKDGERDREKDRERDRDKDRDRDRDRHHRDRHRDR 120

Query: 121 GERREGGRSRDDDDYYRSRDFDRRRDYDKDREDRHRRRSRSRSKGISEHRSRSPSPSRSR 180
           GERREGGRSRDDDDYYRSRD+DRRRDYDK+REDRHRRRSRSRSKGI EHRSRSPSPSRSR
Sbjct: 121 GERREGGRSRDDDDYYRSRDYDRRRDYDKEREDRHRRRSRSRSKGIPEHRSRSPSPSRSR 180

Query: 181 SRSKSKRISGFDMAPPTTAILPGATAAAAGQMPGATPAIPGMFPTMFPLATGQPFGALPV 240
           SRSKSKRISGFDMAPPTTAILPGATA AAGQ+PG TPAIPGMFPTMFPLATGQPFGALPV
Sbjct: 181 SRSKSKRISGFDMAPPTTAILPGATAVAAGQIPGTTPAIPGMFPTMFPLATGQPFGALPV 240

Query: 241 MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH 300
           MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH
Sbjct: 241 MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH 300

Query: 301 EKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAA 360
           EKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQP+PNLNLAA
Sbjct: 301 EKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPNLNLAA 360

Query: 361 VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAF 420
           VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAF
Sbjct: 361 VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAF 420

Query: 421 CVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQKLML 480
           CVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG NQPKPEQESVLLHAQQQIALQKLML
Sbjct: 421 CVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGTNQPKPEQESVLLHAQQQIALQKLML 480

Query: 481 QPGAVSTKVLCLTQVVSPEELINDEDYEDIMEDMRGEGGKFGTLVNVVIPRPRPNDMAPG 540
           QPGAVSTKVLCLTQVV+PEELINDEDYEDIMEDMRGEGGKFG LVNVVIPRPRPN+ APG
Sbjct: 481 QPGAVSTKVLCLTQVVTPEELINDEDYEDIMEDMRGEGGKFGALVNVVIPRPRPNEAAPG 540

Query: 541 ---VFLEYADIDSATKARAGLNGRKFGGNQVVAVFYPENKFAQGEYDA 586
              VFLEYADI+SATKAR+GLNGRKFGGNQV+AVFYPENKFAQGEYDA
Sbjct: 541 VGKVFLEYADIESATKARSGLNGRKFGGNQVIAVFYPENKFAQGEYDA 588

[Close]

BLAST of MS000609 vs. ExPASy Swiss-Prot
Match: Q9ZR40 (Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia OX=4092 GN=U2AF65B PE=2 SV=1)

HSP 1 Score: 804.3 bits (2076), Expect = 9.2e-232
Identity = 455/589 (77.25%), Postives = 509/589 (86.42%), Query Frame = 0


Query: 8   YEGNGEDTDNYGDGFSPQVRGGSHGGH----DTHSDSKSQHGSRDYE--RESSKSRDKER 67
           YEGNGED DNY  G SP  +  S  GH    D +SDSKSQH SR+ E  R+SS+SR+K+R
Sbjct: 4   YEGNGEDIDNYTGGSSPPPKSRSSHGHGPTPDDYSDSKSQHSSRENEKDRDSSRSREKDR 63

Query: 68  EKGRDREKDRERDRGRGRERDREKSKDGERDREKDRDRDREKDRDRDRDRHHRDRHRDRG 127
           E+GRD+++DR+RDR RGR+RDR             RDRD++++R++DRDRHH DRHRDR 
Sbjct: 64  ERGRDKDRDRDRDRDRGRDRDR------------GRDRDKDREREKDRDRHHGDRHRDRS 123

Query: 128 ERREGGRS--RDDDDYYRSRDFDRRRDYDKDREDRHRRRSRSRSKGISEHRSRSPSPSRS 187
           +RRE  R+  RDDDD +R+RD+D++R++ KDRE RHR RSRSR  G SEHRSR    SRS
Sbjct: 124 DRREKERTRDRDDDDRHRTRDYDQQREHAKDRESRHRHRSRSR--GRSEHRSR----SRS 183

Query: 188 RSRSKSKRISGFDMAPPTTAILPGATAAAAGQMPGATPAIPGMFPTMFPLATGQPFGALP 247
           RSRSKSKRISGFDMAPPT+A+LPG T AAAGQ+PG  P IPGMFP MFPLA+GQ FGALP
Sbjct: 184 RSRSKSKRISGFDMAPPTSAMLPGIT-AAAGQVPGTNPPIPGMFPNMFPLASGQ-FGALP 243

Query: 248 VMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYIN 307
           VMP+QAMTQQATRHARRVYVGGLP  ANEQSVATFFS VM+AIGGNTAGPGDAVVNVYIN
Sbjct: 244 VMPIQAMTQQATRHARRVYVGGLPAHANEQSVATFFSHVMSAIGGNTAGPGDAVVNVYIN 303

Query: 308 HEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLA 367
           +EKKFAFVEMRSVEEASNAMALDGIIFEGAP KVRRPSDYNPSLAATLGPSQPNPNLNLA
Sbjct: 304 YEKKFAFVEMRSVEEASNAMALDGIIFEGAPCKVRRPSDYNPSLAATLGPSQPNPNLNLA 363

Query: 368 AVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYA 427
           AVGL+PGSAGGLEGPDRIFVGGLPYYFTEAQ+RELLESFGPLRGFDLVKDRETGNSKGYA
Sbjct: 364 AVGLSPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYA 423

Query: 428 FCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQKLM 487
           FCVYQD+SVTDIACAALNGIKMGDKTLTVRRANQG  QPKPEQESVLLHAQQQIALQ+LM
Sbjct: 424 FCVYQDVSVTDIACAALNGIKMGDKTLTVRRANQGTTQPKPEQESVLLHAQQQIALQRLM 483

Query: 488 LQPGAVSTKVLCLTQVVSPEELINDEDYEDIMEDMRGEGGKFGTLVNVVIPRPRPN-DMA 547
           LQP  ++TKVL LT+V+S +EL +DEDY+DI+EDMR E GKFG+LVNVVIPRP PN +  
Sbjct: 484 LQPATLATKVLSLTEVISADELNDDEDYQDILEDMRTECGKFGSLVNVVIPRPSPNGEPT 543

Query: 548 PG---VFLEYADIDSATKARAGLNGRKFGGNQVVAVFYPENKFAQGEYD 585
           PG   VFLEYAD+DS++KAR  LNGRKFGGNQVVAVFYPENKF +G+YD
Sbjct: 544 PGVGKVFLEYADVDSSSKARQSLNGRKFGGNQVVAVFYPENKFYEGDYD 572

[Close]

BLAST of MS000609 vs. ExPASy Swiss-Prot
Match: Q9ZR39 (Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia OX=4092 GN=U2AF65A PE=2 SV=1)

HSP 1 Score: 778.5 bits (2009), Expect = 5.4e-224
Identity = 445/586 (75.94%), Postives = 498/586 (84.98%), Query Frame = 0


Query: 8   YEGNGEDTDNYGDGFSPQVRGGSHGGHDTHSDSKSQHGSRDY--ERESSKSRDKEREKGR 67
           YEGNG D DN  +G SP                 SQH SRD+  ER+SS+SRDKER+KGR
Sbjct: 4   YEGNGVDIDN--NGASPY----------------SQHISRDHENERDSSRSRDKERDKGR 63

Query: 68  DREKDRERDRGRGRERDREKSKDGERDREKDRDRDREKDRDRDRDRHHRDRHRDRGERRE 127
           D+++DR+R+R R R+RDR K        E+D+DR R++D ++DRDRHHRDRHRDR +RRE
Sbjct: 64  DKDRDRDRNRDRDRDRDRVK--------ERDKDRHRDRDGEKDRDRHHRDRHRDRSDRRE 123

Query: 128 GGRS--RDDDDYYRSRDFDRRRDYDKDREDRHRRRSRSRSKGISEHRSRSPSPSRSRSRS 187
             R+  RD+DD +RSRD+DRRRD DKDRED  RRR R  S+G SEHRS+    SRSRS S
Sbjct: 124 RERTRDRDEDDLHRSRDYDRRRDNDKDRED--RRRHRPSSRGRSEHRSK----SRSRSPS 183

Query: 188 KSKRISGFDMAPPTTAILPGATAAAAGQMPGATPAIPGMFPTMFPLATGQPFGALPVMPV 247
           KSKRISGFDMAPPTTA+LPGAT  AAGQ+PG  PAIPG+F  MFPLA+ Q FGALP+MPV
Sbjct: 184 KSKRISGFDMAPPTTALLPGAT-DAAGQVPGTNPAIPGLFSNMFPLASSQ-FGALPMMPV 243

Query: 248 QAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKK 307
           QAMTQQATRHARRVYVGGLPPTANEQSVATFFS VM AIGGNTAGPGDAVVNVYINHEKK
Sbjct: 244 QAMTQQATRHARRVYVGGLPPTANEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKK 303

Query: 308 FAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGL 367
           FAFVEMRSVEEASNAMALDG+IFEG PVKVRRPSDYNPSLAATLGPSQP+PNLNLAAVG 
Sbjct: 304 FAFVEMRSVEEASNAMALDGVIFEGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGS 363

Query: 368 TPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVY 427
           TPGS+GGLEGPDRIFVGGLPYYFTE+Q+RELLESFG LRGFDLVKDRETGNSKGYAFCVY
Sbjct: 364 TPGSSGGLEGPDRIFVGGLPYYFTESQIRELLESFGQLRGFDLVKDRETGNSKGYAFCVY 423

Query: 428 QDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQKLMLQPG 487
           QD+SVTDIACAALNGIKMGDKTLTVRRANQG  QP PEQESVLLHAQQQIALQ+ MLQPG
Sbjct: 424 QDVSVTDIACAALNGIKMGDKTLTVRRANQGTTQPNPEQESVLLHAQQQIALQRFMLQPG 483

Query: 488 AVSTKVLCLTQVVSPEELINDEDYEDIMEDMRGEGGKFGTLVNVVIPRPRPNDM-APG-- 547
           A++TKVLCLT+VV+ +EL +D+DY+DI+EDMR E  KFG LVNVVIPRP PN +  PG  
Sbjct: 484 ALATKVLCLTEVVTVDELNDDDDYQDILEDMRTECEKFGALVNVVIPRPNPNGVPTPGLG 543

Query: 548 -VFLEYADIDSATKARAGLNGRKFGGNQVVAVFYPENKFAQGEYDA 586
            VFLEYAD+D ++KAR GLNGRKFGGNQVVAVFYPENKF++G+Y+A
Sbjct: 544 KVFLEYADVDGSSKARQGLNGRKFGGNQVVAVFYPENKFSEGDYEA 555

[Close]

BLAST of MS000609 vs. ExPASy Swiss-Prot
Match: Q8L716 (Splicing factor U2af large subunit B OS=Arabidopsis thaliana OX=3702 GN=U2AF65B PE=1 SV=2)

HSP 1 Score: 731.1 bits (1886), Expect = 9.9e-210
Identity = 426/599 (71.12%), Postives = 482/599 (80.47%), Query Frame = 0


Query: 1   MTDYDGRYEGNGEDTDNYGDGFSPQVRGGSHGGHDTHSDSKSQHGSRDYERESSKSRDKE 60
           M  Y+G  +G    T+N+ + +       S      H DSKS+  S D +++SSK  +K+
Sbjct: 1   MMSYEGNGDGVAISTENHNENYI------SLESSPFHEDSKSRE-SHDLKKDSSKISEKD 60

Query: 61  REKGRDREKDRERDRGRGRERDREKSKDGERDREKDRDRDREKDRDRDRDRHHRDRHRDR 120
            E GRD  KD  +DR R ++RDREKS+D +R++ +DRDRDRE+ +DR RDRHHRDRHRDR
Sbjct: 61  NENGRD--KDGNKDRDREKDRDREKSRDRDREKSRDRDRDRERSKDRQRDRHHRDRHRDR 120

Query: 121 G-ERREGGRSRDDDDYYRSRDFDRRRDYDKDREDRHRRRSRSRSKGISEHRSRSP----- 180
             ER E     DDD + RSRD DRRR  D+DRE RHRRRSRSRS+  SE RSRS      
Sbjct: 121 SRERSEKRDDLDDDHHRRSRDRDRRRSRDRDREVRHRRRSRSRSRSRSERRSRSEHRHKS 180

Query: 181 ---SPSRSRSRSKSKRISGFDMAPPTTAILPGATAAAAGQMPG--ATPAIPGMFPTMFPL 240
              S SRSRSRSKSKR SGFDMAPP   +L     AAAGQ+P    T  IPGMF  MFP+
Sbjct: 181 EHRSRSRSRSRSKSKRRSGFDMAPPD--MLAATAVAAAGQVPSVPTTATIPGMFSNMFPM 240

Query: 241 ATGQPFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGP 300
             GQ  GALPV+PVQAMTQQATRHARRVYVGGLPPTANEQSV+TFFSQVM+AIGGNTAGP
Sbjct: 241 VPGQQLGALPVLPVQAMTQQATRHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGP 300

Query: 301 GDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGP 360
           GDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGII EG PVKVRRP+DYNPSLAATLGP
Sbjct: 301 GDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGP 360

Query: 361 SQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKD 420
           SQPNPNLNL AVGL+ GS GGLEGPDRIFVGGLPYYFTE Q+RELLESFGPLRGF+LVKD
Sbjct: 361 SQPNPNLNLGAVGLSSGSTGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKD 420

Query: 421 RETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHA 480
           RETGNSKGYAFCVYQD SVTDIACAALNGIKMGDKTLTVRRA QGA QPKPEQE VLL+A
Sbjct: 421 RETGNSKGYAFCVYQDPSVTDIACAALNGIKMGDKTLTVRRAIQGAIQPKPEQEEVLLYA 480

Query: 481 QQQIALQKLMLQPGAVSTKVLCLTQVVSPEELINDEDYEDIMEDMRGEGGKFGTLVNVVI 540
           QQQIALQ+LM QPG   TK++CLTQVV+ ++L +DE+Y +IMEDMR EGGKFG LVNVVI
Sbjct: 481 QQQIALQRLMFQPGGTPTKIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVI 540

Query: 541 PRPRP-NDMAPG---VFLEYADIDSATKARAGLNGRKFGGNQVVAVFYPENKFAQGEYD 585
           PRP P +D  PG   VFLEYAD+D ++KAR+G+NGRKFGGNQVVAV+YPE+K+AQG+Y+
Sbjct: 541 PRPNPDHDPTPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKYAQGDYE 588

[Close]

BLAST of MS000609 vs. ExPASy Swiss-Prot
Match: O23212 (Splicing factor U2af large subunit A OS=Arabidopsis thaliana OX=3702 GN=U2AF65A PE=1 SV=2)

HSP 1 Score: 711.8 bits (1836), Expect = 6.2e-204
Identity = 419/586 (71.50%), Postives = 473/586 (80.72%), Query Frame = 0


Query: 8   YEGNGEDTDNYGDGFSPQVRGGSHGGHDTHSDSKSQHGSRDYERESSKSRDKEREKGRDR 67
           +EGNG       D    +  GG  G  +   DSK +  SRD+ERE+S+S+D+EREKGRD 
Sbjct: 7   HEGNG----TVADAIYDEENGGRDGEIEDQLDSKPKRESRDHERETSRSKDREREKGRD- 66

Query: 68  EKDRERDRGRGRERDREKSKDGERDREKDRDRDREKDRDRDRDRHHRDRHRDRGERREGG 127
            KDRERD    R   R + +DGE+ +E+ RD+DR+      R   HRD  R+RGERRE G
Sbjct: 67  -KDRERDSEVSR---RSRDRDGEKSKERSRDKDRDHRERHHRSSRHRDHSRERGERRERG 126

Query: 128 RSRDDDDYYRS--RDFDRRRDYDKDREDRHRRRSRSRSKGISEHRSRSPSPSRSRSRSKS 187
             RDDDDY RS  RD DRRRD   DR  R  RRSRSRSK  SE R+RS SPS+S+     
Sbjct: 127 -GRDDDDYRRSRDRDHDRRRD---DRGGRRSRRSRSRSKDRSERRTRSRSPSKSK----- 186

Query: 188 KRISGFDMAPPTTAILPGATAAAAGQMPGATPAIP--GMFPTMFPLATGQPFGALPVMPV 247
           +R+SGFDMAPP +A+L  A AA  GQ+P A P +P  GMFP MFPL TGQ FG L +MP+
Sbjct: 187 QRVSGFDMAPPASAML-AAGAAVTGQVPPAPPTLPGAGMFPNMFPLPTGQSFGGLSMMPI 246

Query: 248 QAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKK 307
           QAMTQQATRHARRVYVGGL PTANEQSVATFFSQVMAA+GGNTAGPGDAVVNVYINHEKK
Sbjct: 247 QAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKK 306

Query: 308 FAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGL 367
           FAFVEMRSVEEASNAM+LDGIIFEGAPVKVRRPSDYNPSLAATLGPSQP+P+LNLAAVGL
Sbjct: 307 FAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGL 366

Query: 368 TPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVY 427
           TPG++GGLEGPDRIFVGGLPYYFTE+QVRELLESFG L+GFDLVKDRETGNSKGYAFCVY
Sbjct: 367 TPGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVY 426

Query: 428 QDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQKLMLQPG 487
           QDLSVTDIACAALNGIKMGDKTLTVRRANQG    KPEQE+VLLHAQQQIA Q++MLQPG
Sbjct: 427 QDLSVTDIACAALNGIKMGDKTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQPG 486

Query: 488 AVSTKVLCLTQVVSPEELINDEDYEDIMEDMRGEGGKFGTLVNVVIPRPRPN-DMAPG-- 547
           AV+T V+CLTQVV+ +EL +DE+Y DIMEDMR EGGKFG L NVVIPRP PN +   G  
Sbjct: 487 AVATTVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFGALTNVVIPRPSPNGEPVAGLG 546

Query: 548 -VFLEYADIDSATKARAGLNGRKFGGNQVVAVFYPENKFAQGEYDA 586
            VFL+YAD D +T+AR G+NGRKFGGN+VVAV+YPE+KF QG+Y A
Sbjct: 547 KVFLKYADTDGSTRARFGMNGRKFGGNEVVAVYYPEDKFEQGDYGA 573

[Close]

BLAST of MS000609 vs. ExPASy Swiss-Prot
Match: Q2QZL4 (Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF65B PE=3 SV=2)

HSP 1 Score: 694.5 bits (1791), Expect = 1.0e-198
Identity = 407/567 (71.78%), Postives = 457/567 (80.60%), Query Frame = 0


Query: 26  VRGGSHGGHDTHSDSKSQHGSRDYERESSKSRDKEREKGRDREKDRERDRGRGRERDREK 85
           V GG   G DTHS        RD        +D+EREK +DRE+ R+RDR RGR+RDR+K
Sbjct: 12  VDGGRPEG-DTHSREDGLSKPRD--------KDREREKDKDRERHRDRDRDRGRDRDRDK 71

Query: 86  SKDGERDREKDRDRDREKDRDRDRDRHHRDR--HRDRGERREGGRSRDDDDYYRSRDFDR 145
            K+ +RD+E+DRDRDR+KDRDR   RHHR+R  HRDR          DD D +RSRD +R
Sbjct: 72  DKEKDRDKERDRDRDRDKDRDR-HHRHHRERREHRDRS---------DDHDRHRSRDSER 131

Query: 146 RRDYDKDREDRHRRRSRSRSKGISEHRSRSPSPSRSRSRSKSKRISGFDMAPPTTAILPG 205
           RRD+++D   RHR RSRSRS+G    R R    SRSRSRSKSKR+SGFDMAPP  A++P 
Sbjct: 132 RRDHERDGRRRHRSRSRSRSRG----RDRR---SRSRSRSKSKRVSGFDMAPPAQAVVPQ 191

Query: 206 ATA-AAAGQMPGATPAIPGMFPTMFPLATGQPFGALPVMPVQAMTQQATRHARRVYVGGL 265
             A     Q PG   AIPGMFP M P+  GQ F  L + P QAMTQQATRHARRVYVGGL
Sbjct: 192 FPAIPTPSQFPGT--AIPGMFPNMLPMGVGQ-FNPLVIQP-QAMTQQATRHARRVYVGGL 251

Query: 266 PPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALD 325
           PPTANEQSVA +F+QVMAAIGGNTAGPGDAV+NVYINH+KKFAFVEMRSVEEASNAMALD
Sbjct: 252 PPTANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALD 311

Query: 326 GIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGL 385
           GI+FEGAPVKVRRP+DYNPSLAA LGPSQP+PNLNLAAVGLTPGSAGGLEGPDRIFVGGL
Sbjct: 312 GILFEGAPVKVRRPTDYNPSLAAALGPSQPSPNLNLAAVGLTPGSAGGLEGPDRIFVGGL 371

Query: 386 PYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMG 445
           PYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDL+VTDIACAALNGIKMG
Sbjct: 372 PYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALNGIKMG 431

Query: 446 DKTLTVRRANQGANQPKPEQESVLLHAQQQIALQKLMLQPGAVSTKVLCLTQVVSPEELI 505
           DKTLTVRRANQGA QP+PEQES+LL AQQQ+ LQKL+ Q GA+ TKV+CLTQVVS +EL 
Sbjct: 432 DKTLTVRRANQGAAQPRPEQESILLQAQQQVQLQKLVYQVGALPTKVVCLTQVVSADELK 491

Query: 506 NDEDYEDIMEDMRGEGGKFGTLVNVVIPRPRPNDMAPG----VFLEYADIDSATKARAGL 565
           +DE+YEDIMEDMR E GK+G L+ VVIPRP P+ +       VFLEYAD+D ATKA+  +
Sbjct: 492 DDEEYEDIMEDMRLEAGKYGNLIKVVIPRPDPSGLPVAGVGKVFLEYADVDGATKAKTAM 548

Query: 566 NGRKFGGNQVVAVFYPENKFAQGEYDA 586
           +GRKFGGN VVAVFYPENKF+  EYDA
Sbjct: 552 HGRKFGGNPVVAVFYPENKFSSAEYDA 548

[Close]

BLAST of MS000609 vs. ExPASy TrEMBL
Match: A0A6J1D9H3 (U2 snRNP auxiliary factor large subunit OS=Momordica charantia OX=3673 GN=LOC111018596 PE=3 SV=1)

HSP 1 Score: 1091.6 bits (2822), Expect = 0.0e+00
Identity = 585/588 (99.49%), Postives = 585/588 (99.49%), Query Frame = 0


Query: 1   MTDYDGRYEGNGEDTDNYGDGFSPQVRGGSHGGHDTHSDSKSQHGSRDYERESSKSRDKE 60
           MTDYDGRYEGNGEDTDNYGDGFSPQVRGGSHGGHDTHSDSKSQHGSRDYERESSKSRDKE
Sbjct: 1   MTDYDGRYEGNGEDTDNYGDGFSPQVRGGSHGGHDTHSDSKSQHGSRDYERESSKSRDKE 60

Query: 61  REKGRDREKDRERDRGRGRERDREKSKDGERDREKDRDRDREKDRDRDRDRHHRDRHRDR 120
           REKGRDREKDRERDRGRGRERDREKSKDGERDREKDRDRDREKDRDRDRDRHHRDRHRDR
Sbjct: 61  REKGRDREKDRERDRGRGRERDREKSKDGERDREKDRDRDREKDRDRDRDRHHRDRHRDR 120

Query: 121 GERREGGRSRDDDDYYRSRDFDRRRDYDKDREDRHRRRSRSRSKGISEHRSRSPSPSRSR 180
           GERREGGRSRDDDDYYRSRDFDRRRDYDKDREDRHRRRSRSRSKGISEHRSRSPSPSRSR
Sbjct: 121 GERREGGRSRDDDDYYRSRDFDRRRDYDKDREDRHRRRSRSRSKGISEHRSRSPSPSRSR 180

Query: 181 SRSKSKRISGFDMAPPTTAILPGATAAAAGQMPGATPAIPGMFPTMFPLATGQPFGALPV 240
           SRSKSKRISGFDMAPPTTAILPGATAAAAGQMPGATPAIPGMFPTMFPLATGQPFGALPV
Sbjct: 181 SRSKSKRISGFDMAPPTTAILPGATAAAAGQMPGATPAIPGMFPTMFPLATGQPFGALPV 240

Query: 241 MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH 300
           MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH
Sbjct: 241 MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH 300

Query: 301 EKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAA 360
           EKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAA
Sbjct: 301 EKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAA 360

Query: 361 VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAF 420
           VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAF
Sbjct: 361 VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAF 420

Query: 421 CVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQKLML 480
           CVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQKLML
Sbjct: 421 CVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQKLML 480

Query: 481 QPGAVSTKVLCLTQVVSPEELINDEDYEDIMEDMRGEGGKFGTLVNVVIPRPRPNDMAPG 540
           QPGAVSTKVLCLTQVVSPEELINDEDYEDIMEDMRGEGGKFGTLVNVVIPRPRPNDMAPG
Sbjct: 481 QPGAVSTKVLCLTQVVSPEELINDEDYEDIMEDMRGEGGKFGTLVNVVIPRPRPNDMAPG 540

Query: 541 ---VFLEYADIDSATKARAGLNGRKFGGNQVVAVFYPENKFAQGEYDA 586
              VFLEYADIDSATKARAGLNGRKFGGNQVVAVFYPENKFAQGEYDA
Sbjct: 541 VGKVFLEYADIDSATKARAGLNGRKFGGNQVVAVFYPENKFAQGEYDA 588

[Close]

BLAST of MS000609 vs. ExPASy TrEMBL
Match: A0A6J1D8H7 (U2 snRNP auxiliary factor large subunit OS=Momordica charantia OX=3673 GN=LOC111018596 PE=3 SV=1)

HSP 1 Score: 1085.9 bits (2807), Expect = 0.0e+00
Identity = 584/588 (99.32%), Postives = 584/588 (99.32%), Query Frame = 0


Query: 1   MTDYDGRYEGNGEDTDNYGDGFSPQVRGGSHGGHDTHSDSKSQHGSRDYERESSKSRDKE 60
           MTDYDGRYEGNGEDTDNYGDGFSPQVRGGSHGGHDTHSDSKSQHGSRDYERESSKSRDKE
Sbjct: 1   MTDYDGRYEGNGEDTDNYGDGFSPQVRGGSHGGHDTHSDSKSQHGSRDYERESSKSRDKE 60

Query: 61  REKGRDREKDRERDRGRGRERDREKSKDGERDREKDRDRDREKDRDRDRDRHHRDRHRDR 120
           REKGRDREKDRERDRGRGRERDREKSKDGERDREKDRDRDREKDRDRDRDRHHRDRHRDR
Sbjct: 61  REKGRDREKDRERDRGRGRERDREKSKDGERDREKDRDRDREKDRDRDRDRHHRDRHRDR 120

Query: 121 GERREGGRSRDDDDYYRSRDFDRRRDYDKDREDRHRRRSRSRSKGISEHRSRSPSPSRSR 180
           GERREGGRSRDDDDYYRSRDFDRRRDYDKDREDRHRRRSRSRSKGISEHRSRSPSPSRSR
Sbjct: 121 GERREGGRSRDDDDYYRSRDFDRRRDYDKDREDRHRRRSRSRSKGISEHRSRSPSPSRSR 180

Query: 181 SRSKSKRISGFDMAPPTTAILPGATAAAAGQMPGATPAIPGMFPTMFPLATGQPFGALPV 240
           SRSKSKRISGFDMAPPTTAILPGAT AAAGQMPGATPAIPGMFPTMFPLATGQPFGALPV
Sbjct: 181 SRSKSKRISGFDMAPPTTAILPGAT-AAAGQMPGATPAIPGMFPTMFPLATGQPFGALPV 240

Query: 241 MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH 300
           MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH
Sbjct: 241 MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH 300

Query: 301 EKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAA 360
           EKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAA
Sbjct: 301 EKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAA 360

Query: 361 VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAF 420
           VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAF
Sbjct: 361 VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAF 420

Query: 421 CVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQKLML 480
           CVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQKLML
Sbjct: 421 CVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQKLML 480

Query: 481 QPGAVSTKVLCLTQVVSPEELINDEDYEDIMEDMRGEGGKFGTLVNVVIPRPRPNDMAPG 540
           QPGAVSTKVLCLTQVVSPEELINDEDYEDIMEDMRGEGGKFGTLVNVVIPRPRPNDMAPG
Sbjct: 481 QPGAVSTKVLCLTQVVSPEELINDEDYEDIMEDMRGEGGKFGTLVNVVIPRPRPNDMAPG 540

Query: 541 ---VFLEYADIDSATKARAGLNGRKFGGNQVVAVFYPENKFAQGEYDA 586
              VFLEYADIDSATKARAGLNGRKFGGNQVVAVFYPENKFAQGEYDA
Sbjct: 541 VGKVFLEYADIDSATKARAGLNGRKFGGNQVVAVFYPENKFAQGEYDA 587

[Close]

BLAST of MS000609 vs. ExPASy TrEMBL
Match: A0A6J1DBI7 (splicing factor U2af large subunit B-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018596 PE=3 SV=1)

HSP 1 Score: 1076.6 bits (2783), Expect = 0.0e+00
Identity = 585/616 (94.97%), Postives = 585/616 (94.97%), Query Frame = 0


Query: 1   MTDYDGRYEGNGEDTDNYGDGFSPQVRGGSHGGHDTHSDSKSQHGSRDYERESSKSRDKE 60
           MTDYDGRYEGNGEDTDNYGDGFSPQVRGGSHGGHDTHSDSKSQHGSRDYERESSKSRDKE
Sbjct: 1   MTDYDGRYEGNGEDTDNYGDGFSPQVRGGSHGGHDTHSDSKSQHGSRDYERESSKSRDKE 60

Query: 61  REKGRDREKDRERDRGRGRERDREKSKDGERDREKDRDRDREKDRDRDRDRHHRDRHRDR 120
           REKGRDREKDRERDRGRGRERDREKSKDGERDREKDRDRDREKDRDRDRDRHHRDRHRDR
Sbjct: 61  REKGRDREKDRERDRGRGRERDREKSKDGERDREKDRDRDREKDRDRDRDRHHRDRHRDR 120

Query: 121 GERREGGRSRDDDDYYRSRDFDRRRDYDKDREDRHRRRSRSRSKGISEHRSRSPSPSRSR 180
           GERREGGRSRDDDDYYRSRDFDRRRDYDKDREDRHRRRSRSRSKGISEHRSRSPSPSRSR
Sbjct: 121 GERREGGRSRDDDDYYRSRDFDRRRDYDKDREDRHRRRSRSRSKGISEHRSRSPSPSRSR 180

Query: 181 SRSKSKRISGFDMAPPTTAILPGATAAAAGQMPGATPAIPGMFPTMFPLATGQPFGALPV 240
           SRSKSKRISGFDMAPPTTAILPGATAAAAGQMPGATPAIPGMFPTMFPLATGQPFGALPV
Sbjct: 181 SRSKSKRISGFDMAPPTTAILPGATAAAAGQMPGATPAIPGMFPTMFPLATGQPFGALPV 240

Query: 241 MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH 300
           MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH
Sbjct: 241 MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH 300

Query: 301 EKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAA 360
           EKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAA
Sbjct: 301 EKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAA 360

Query: 361 VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAF 420
           VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAF
Sbjct: 361 VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAF 420

Query: 421 CVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQ---- 480
           CVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQ    
Sbjct: 421 CVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQLILD 480

Query: 481 ------------------------KLMLQPGAVSTKVLCLTQVVSPEELINDEDYEDIME 540
                                   KLMLQPGAVSTKVLCLTQVVSPEELINDEDYEDIME
Sbjct: 481 PSRLESFDSLAFRREGAFSSPGPEKLMLQPGAVSTKVLCLTQVVSPEELINDEDYEDIME 540

Query: 541 DMRGEGGKFGTLVNVVIPRPRPNDMAPG---VFLEYADIDSATKARAGLNGRKFGGNQVV 586
           DMRGEGGKFGTLVNVVIPRPRPNDMAPG   VFLEYADIDSATKARAGLNGRKFGGNQVV
Sbjct: 541 DMRGEGGKFGTLVNVVIPRPRPNDMAPGVGKVFLEYADIDSATKARAGLNGRKFGGNQVV 600

[Close]

BLAST of MS000609 vs. ExPASy TrEMBL
Match: A0A6J1DAR5 (splicing factor U2af large subunit B-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111018596 PE=3 SV=1)

HSP 1 Score: 1070.8 bits (2768), Expect = 2.0e-309
Identity = 584/616 (94.81%), Postives = 584/616 (94.81%), Query Frame = 0


Query: 1   MTDYDGRYEGNGEDTDNYGDGFSPQVRGGSHGGHDTHSDSKSQHGSRDYERESSKSRDKE 60
           MTDYDGRYEGNGEDTDNYGDGFSPQVRGGSHGGHDTHSDSKSQHGSRDYERESSKSRDKE
Sbjct: 1   MTDYDGRYEGNGEDTDNYGDGFSPQVRGGSHGGHDTHSDSKSQHGSRDYERESSKSRDKE 60

Query: 61  REKGRDREKDRERDRGRGRERDREKSKDGERDREKDRDRDREKDRDRDRDRHHRDRHRDR 120
           REKGRDREKDRERDRGRGRERDREKSKDGERDREKDRDRDREKDRDRDRDRHHRDRHRDR
Sbjct: 61  REKGRDREKDRERDRGRGRERDREKSKDGERDREKDRDRDREKDRDRDRDRHHRDRHRDR 120

Query: 121 GERREGGRSRDDDDYYRSRDFDRRRDYDKDREDRHRRRSRSRSKGISEHRSRSPSPSRSR 180
           GERREGGRSRDDDDYYRSRDFDRRRDYDKDREDRHRRRSRSRSKGISEHRSRSPSPSRSR
Sbjct: 121 GERREGGRSRDDDDYYRSRDFDRRRDYDKDREDRHRRRSRSRSKGISEHRSRSPSPSRSR 180

Query: 181 SRSKSKRISGFDMAPPTTAILPGATAAAAGQMPGATPAIPGMFPTMFPLATGQPFGALPV 240
           SRSKSKRISGFDMAPPTTAILPGAT AAAGQMPGATPAIPGMFPTMFPLATGQPFGALPV
Sbjct: 181 SRSKSKRISGFDMAPPTTAILPGAT-AAAGQMPGATPAIPGMFPTMFPLATGQPFGALPV 240

Query: 241 MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH 300
           MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH
Sbjct: 241 MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH 300

Query: 301 EKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAA 360
           EKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAA
Sbjct: 301 EKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAA 360

Query: 361 VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAF 420
           VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAF
Sbjct: 361 VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAF 420

Query: 421 CVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQ---- 480
           CVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQ    
Sbjct: 421 CVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQLILD 480

Query: 481 ------------------------KLMLQPGAVSTKVLCLTQVVSPEELINDEDYEDIME 540
                                   KLMLQPGAVSTKVLCLTQVVSPEELINDEDYEDIME
Sbjct: 481 PSRLESFDSLAFRREGAFSSPGPEKLMLQPGAVSTKVLCLTQVVSPEELINDEDYEDIME 540

Query: 541 DMRGEGGKFGTLVNVVIPRPRPNDMAPG---VFLEYADIDSATKARAGLNGRKFGGNQVV 586
           DMRGEGGKFGTLVNVVIPRPRPNDMAPG   VFLEYADIDSATKARAGLNGRKFGGNQVV
Sbjct: 541 DMRGEGGKFGTLVNVVIPRPRPNDMAPGVGKVFLEYADIDSATKARAGLNGRKFGGNQVV 600

[Close]

BLAST of MS000609 vs. ExPASy TrEMBL
Match: A0A6J1EPW8 (U2 snRNP auxiliary factor large subunit OS=Cucurbita moschata OX=3662 GN=LOC111436322 PE=3 SV=1)

HSP 1 Score: 1055.8 bits (2729), Expect = 6.5e-305
Identity = 562/588 (95.58%), Postives = 576/588 (97.96%), Query Frame = 0


Query: 1   MTDYDGRYEGNGEDTDNYGDGFSPQVRGGSHGGHDTHSDSKSQHGSRDYERESSKSRDKE 60
           MTDYDGRYEGNGED DNYGDGFSPQ RGGSHGGHDTHSDSKSQHGSR+YERESSKSR+KE
Sbjct: 1   MTDYDGRYEGNGEDADNYGDGFSPQARGGSHGGHDTHSDSKSQHGSREYERESSKSREKE 60

Query: 61  REKGRDREKDRERDRGRGRERDREKSKDGERDREKDRDRDREKDRDRDRDRHHRDRHRDR 120
           R+KGRDREKDRERDR RGRERDREKSKDGERDREKDR+RDR+KDRDRDRDRHHRDRHRDR
Sbjct: 61  RDKGRDREKDRERDRDRGRERDREKSKDGERDREKDRERDRDKDRDRDRDRHHRDRHRDR 120

Query: 121 GERREGGRSRDDDDYYRSRDFDRRRDYDKDREDRHRRRSRSRSKGISEHRSRSPSPSRSR 180
           GERREGGRSRDDDDYYRSRD+DRRRDYDK+REDRHRRRSRSRSKGI EHRSRSPSPSRSR
Sbjct: 121 GERREGGRSRDDDDYYRSRDYDRRRDYDKEREDRHRRRSRSRSKGIPEHRSRSPSPSRSR 180

Query: 181 SRSKSKRISGFDMAPPTTAILPGATAAAAGQMPGATPAIPGMFPTMFPLATGQPFGALPV 240
           SRSKSKRISGFDMAPPTTAILPGATA AAGQ+PG TPAIPGMFPTMFPLATGQPFGALPV
Sbjct: 181 SRSKSKRISGFDMAPPTTAILPGATAVAAGQIPGTTPAIPGMFPTMFPLATGQPFGALPV 240

Query: 241 MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH 300
           MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH
Sbjct: 241 MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH 300

Query: 301 EKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAA 360
           EKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQP+PNLNLAA
Sbjct: 301 EKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPNLNLAA 360

Query: 361 VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAF 420
           VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAF
Sbjct: 361 VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAF 420

Query: 421 CVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQKLML 480
           CVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG NQPKPEQESVLLHAQQQIALQKLML
Sbjct: 421 CVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGTNQPKPEQESVLLHAQQQIALQKLML 480

Query: 481 QPGAVSTKVLCLTQVVSPEELINDEDYEDIMEDMRGEGGKFGTLVNVVIPRPRPNDMAPG 540
           QPGAVSTKVLCLTQVV+PEELINDEDYEDIMEDMRGEGGKFG LVNVVIPRPRPN+ APG
Sbjct: 481 QPGAVSTKVLCLTQVVTPEELINDEDYEDIMEDMRGEGGKFGALVNVVIPRPRPNEAAPG 540

Query: 541 ---VFLEYADIDSATKARAGLNGRKFGGNQVVAVFYPENKFAQGEYDA 586
              VFLEYADI+SATKAR+GLNGRKFGGNQV+AVFYPENKFAQGEYDA
Sbjct: 541 VGKVFLEYADIESATKARSGLNGRKFGGNQVIAVFYPENKFAQGEYDA 588

[Close]

BLAST of MS000609 vs. TAIR 10
Match: AT1G60900.1 (U2 snRNP auxilliary factor, large subunit, splicing factor )

HSP 1 Score: 731.1 bits (1886), Expect = 7.0e-211
Identity = 426/599 (71.12%), Postives = 482/599 (80.47%), Query Frame = 0


Query: 1   MTDYDGRYEGNGEDTDNYGDGFSPQVRGGSHGGHDTHSDSKSQHGSRDYERESSKSRDKE 60
           M  Y+G  +G    T+N+ + +       S      H DSKS+  S D +++SSK  +K+
Sbjct: 1   MMSYEGNGDGVAISTENHNENYI------SLESSPFHEDSKSRE-SHDLKKDSSKISEKD 60

Query: 61  REKGRDREKDRERDRGRGRERDREKSKDGERDREKDRDRDREKDRDRDRDRHHRDRHRDR 120
            E GRD  KD  +DR R ++RDREKS+D +R++ +DRDRDRE+ +DR RDRHHRDRHRDR
Sbjct: 61  NENGRD--KDGNKDRDREKDRDREKSRDRDREKSRDRDRDRERSKDRQRDRHHRDRHRDR 120

Query: 121 G-ERREGGRSRDDDDYYRSRDFDRRRDYDKDREDRHRRRSRSRSKGISEHRSRSP----- 180
             ER E     DDD + RSRD DRRR  D+DRE RHRRRSRSRS+  SE RSRS      
Sbjct: 121 SRERSEKRDDLDDDHHRRSRDRDRRRSRDRDREVRHRRRSRSRSRSRSERRSRSEHRHKS 180

Query: 181 ---SPSRSRSRSKSKRISGFDMAPPTTAILPGATAAAAGQMPG--ATPAIPGMFPTMFPL 240
              S SRSRSRSKSKR SGFDMAPP   +L     AAAGQ+P    T  IPGMF  MFP+
Sbjct: 181 EHRSRSRSRSRSKSKRRSGFDMAPPD--MLAATAVAAAGQVPSVPTTATIPGMFSNMFPM 240

Query: 241 ATGQPFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGP 300
             GQ  GALPV+PVQAMTQQATRHARRVYVGGLPPTANEQSV+TFFSQVM+AIGGNTAGP
Sbjct: 241 VPGQQLGALPVLPVQAMTQQATRHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGP 300

Query: 301 GDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGP 360
           GDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGII EG PVKVRRP+DYNPSLAATLGP
Sbjct: 301 GDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGP 360

Query: 361 SQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKD 420
           SQPNPNLNL AVGL+ GS GGLEGPDRIFVGGLPYYFTE Q+RELLESFGPLRGF+LVKD
Sbjct: 361 SQPNPNLNLGAVGLSSGSTGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKD 420

Query: 421 RETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHA 480
           RETGNSKGYAFCVYQD SVTDIACAALNGIKMGDKTLTVRRA QGA QPKPEQE VLL+A
Sbjct: 421 RETGNSKGYAFCVYQDPSVTDIACAALNGIKMGDKTLTVRRAIQGAIQPKPEQEEVLLYA 480

Query: 481 QQQIALQKLMLQPGAVSTKVLCLTQVVSPEELINDEDYEDIMEDMRGEGGKFGTLVNVVI 540
           QQQIALQ+LM QPG   TK++CLTQVV+ ++L +DE+Y +IMEDMR EGGKFG LVNVVI
Sbjct: 481 QQQIALQRLMFQPGGTPTKIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVI 540

Query: 541 PRPRP-NDMAPG---VFLEYADIDSATKARAGLNGRKFGGNQVVAVFYPENKFAQGEYD 585
           PRP P +D  PG   VFLEYAD+D ++KAR+G+NGRKFGGNQVVAV+YPE+K+AQG+Y+
Sbjct: 541 PRPNPDHDPTPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKYAQGDYE 588

[Close]

BLAST of MS000609 vs. TAIR 10
Match: AT4G36690.1 (U2 snRNP auxilliary factor, large subunit, splicing factor )

HSP 1 Score: 711.8 bits (1836), Expect = 4.4e-205
Identity = 419/586 (71.50%), Postives = 473/586 (80.72%), Query Frame = 0


Query: 8   YEGNGEDTDNYGDGFSPQVRGGSHGGHDTHSDSKSQHGSRDYERESSKSRDKEREKGRDR 67
           +EGNG       D    +  GG  G  +   DSK +  SRD+ERE+S+S+D+EREKGRD 
Sbjct: 7   HEGNG----TVADAIYDEENGGRDGEIEDQLDSKPKRESRDHERETSRSKDREREKGRD- 66

Query: 68  EKDRERDRGRGRERDREKSKDGERDREKDRDRDREKDRDRDRDRHHRDRHRDRGERREGG 127
            KDRERD    R   R + +DGE+ +E+ RD+DR+      R   HRD  R+RGERRE G
Sbjct: 67  -KDRERDSEVSR---RSRDRDGEKSKERSRDKDRDHRERHHRSSRHRDHSRERGERRERG 126

Query: 128 RSRDDDDYYRS--RDFDRRRDYDKDREDRHRRRSRSRSKGISEHRSRSPSPSRSRSRSKS 187
             RDDDDY RS  RD DRRRD   DR  R  RRSRSRSK  SE R+RS SPS+S+     
Sbjct: 127 -GRDDDDYRRSRDRDHDRRRD---DRGGRRSRRSRSRSKDRSERRTRSRSPSKSK----- 186

Query: 188 KRISGFDMAPPTTAILPGATAAAAGQMPGATPAIP--GMFPTMFPLATGQPFGALPVMPV 247
           +R+SGFDMAPP +A+L  A AA  GQ+P A P +P  GMFP MFPL TGQ FG L +MP+
Sbjct: 187 QRVSGFDMAPPASAML-AAGAAVTGQVPPAPPTLPGAGMFPNMFPLPTGQSFGGLSMMPI 246

Query: 248 QAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKK 307
           QAMTQQATRHARRVYVGGL PTANEQSVATFFSQVMAA+GGNTAGPGDAVVNVYINHEKK
Sbjct: 247 QAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKK 306

Query: 308 FAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGL 367
           FAFVEMRSVEEASNAM+LDGIIFEGAPVKVRRPSDYNPSLAATLGPSQP+P+LNLAAVGL
Sbjct: 307 FAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGL 366

Query: 368 TPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVY 427
           TPG++GGLEGPDRIFVGGLPYYFTE+QVRELLESFG L+GFDLVKDRETGNSKGYAFCVY
Sbjct: 367 TPGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVY 426

Query: 428 QDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQKLMLQPG 487
           QDLSVTDIACAALNGIKMGDKTLTVRRANQG    KPEQE+VLLHAQQQIA Q++MLQPG
Sbjct: 427 QDLSVTDIACAALNGIKMGDKTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQPG 486

Query: 488 AVSTKVLCLTQVVSPEELINDEDYEDIMEDMRGEGGKFGTLVNVVIPRPRPN-DMAPG-- 547
           AV+T V+CLTQVV+ +EL +DE+Y DIMEDMR EGGKFG L NVVIPRP PN +   G  
Sbjct: 487 AVATTVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFGALTNVVIPRPSPNGEPVAGLG 546

Query: 548 -VFLEYADIDSATKARAGLNGRKFGGNQVVAVFYPENKFAQGEYDA 586
            VFL+YAD D +T+AR G+NGRKFGGN+VVAV+YPE+KF QG+Y A
Sbjct: 547 KVFLKYADTDGSTRARFGMNGRKFGGNEVVAVYYPEDKFEQGDYGA 573

[Close]

BLAST of MS000609 vs. TAIR 10
Match: AT4G36690.4 (U2 snRNP auxilliary factor, large subunit, splicing factor )

HSP 1 Score: 687.6 bits (1773), Expect = 8.9e-198
Identity = 402/584 (68.84%), Postives = 456/584 (78.08%), Query Frame = 0


Query: 8   YEGNGEDTDNYGDGFSPQVRGGSHGGHDTHSDSKSQHGSRDYERESSKSRDKEREKGRDR 67
           +EGNG       D    +  GG  G  +   DSK +  SRD+ERE+S+S+D+EREKGRD 
Sbjct: 7   HEGNG----TVADAIYDEENGGRDGEIEDQLDSKPKRESRDHERETSRSKDREREKGRD- 66

Query: 68  EKDRERDRGRGRERDREKSKDGERDREKDRDRDREKDRDRDRDRHHRDRHRDRGERREGG 127
            KDRERD    R   R + +DGE+ +E+ RD+DR+      R   HRD  R+RGERRE G
Sbjct: 67  -KDRERDSEVSR---RSRDRDGEKSKERSRDKDRDHRERHHRSSRHRDHSRERGERRERG 126

Query: 128 RSRDDDDYYRSRDFDRRRDYDKDREDRHRRRSRSRSKGISEHRSRSPSPSRSRSRSKSKR 187
                                     R  RRSRSRSK  SE R+RS SPS+S+     +R
Sbjct: 127 GG------------------------RRSRRSRSRSKDRSERRTRSRSPSKSK-----QR 186

Query: 188 ISGFDMAPPTTAILPGATAAAAGQMPGATPAIP--GMFPTMFPLATGQPFGALPVMPVQA 247
           +SGFDMAPP +A+L  A AA  GQ+P A P +P  GMFP MFPL TGQ FG L +MP+QA
Sbjct: 187 VSGFDMAPPASAML-AAGAAVTGQVPPAPPTLPGAGMFPNMFPLPTGQSFGGLSMMPIQA 246

Query: 248 MTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFA 307
           MTQQATRHARRVYVGGL PTANEQSVATFFSQVMAA+GGNTAGPGDAVVNVYINHEKKFA
Sbjct: 247 MTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFA 306

Query: 308 FVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTP 367
           FVEMRSVEEASNAM+LDGIIFEGAPVKVRRPSDYNPSLAATLGPSQP+P+LNLAAVGLTP
Sbjct: 307 FVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLTP 366

Query: 368 GSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQD 427
           G++GGLEGPDRIFVGGLPYYFTE+QVRELLESFG L+GFDLVKDRETGNSKGYAFCVYQD
Sbjct: 367 GASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQD 426

Query: 428 LSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQKLMLQPGAV 487
           LSVTDIACAALNGIKMGDKTLTVRRANQG    KPEQE+VLLHAQQQIA Q++MLQPGAV
Sbjct: 427 LSVTDIACAALNGIKMGDKTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQPGAV 486

Query: 488 STKVLCLTQVVSPEELINDEDYEDIMEDMRGEGGKFGTLVNVVIPRPRPN-DMAPG---V 547
           +T V+CLTQVV+ +EL +DE+Y DIMEDMR EGGKFG L NVVIPRP PN +   G   V
Sbjct: 487 ATTVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFGALTNVVIPRPSPNGEPVAGLGKV 546

Query: 548 FLEYADIDSATKARAGLNGRKFGGNQVVAVFYPENKFAQGEYDA 586
           FL+YAD D +T+AR G+NGRKFGGN+VVAV+YPE+KF QG+Y A
Sbjct: 547 FLKYADTDGSTRARFGMNGRKFGGNEVVAVYYPEDKFEQGDYGA 551

[Close]

BLAST of MS000609 vs. TAIR 10
Match: AT4G36690.2 (U2 snRNP auxilliary factor, large subunit, splicing factor )

HSP 1 Score: 627.5 bits (1617), Expect = 1.1e-179
Identity = 376/519 (72.45%), Postives = 421/519 (81.12%), Query Frame = 0


Query: 8   YEGNGEDTDNYGDGFSPQVRGGSHGGHDTHSDSKSQHGSRDYERESSKSRDKEREKGRDR 67
           +EGNG       D    +  GG  G  +   DSK +  SRD+ERE+S+S+D+EREKGRD 
Sbjct: 7   HEGNG----TVADAIYDEENGGRDGEIEDQLDSKPKRESRDHERETSRSKDREREKGRD- 66

Query: 68  EKDRERDRGRGRERDREKSKDGERDREKDRDRDREKDRDRDRDRHHRDRHRDRGERREGG 127
            KDRERD    R   R + +DGE+ +E+ RD+DR+      R   HRD  R+RGERRE G
Sbjct: 67  -KDRERDSEVSR---RSRDRDGEKSKERSRDKDRDHRERHHRSSRHRDHSRERGERRERG 126

Query: 128 RSRDDDDYYRS--RDFDRRRDYDKDREDRHRRRSRSRSKGISEHRSRSPSPSRSRSRSKS 187
             RDDDDY RS  RD DRRRD   DR  R  RRSRSRSK  SE R+RS SPS+S+     
Sbjct: 127 -GRDDDDYRRSRDRDHDRRRD---DRGGRRSRRSRSRSKDRSERRTRSRSPSKSK----- 186

Query: 188 KRISGFDMAPPTTAILPGATAAAAGQMPGATPAIP--GMFPTMFPLATGQPFGALPVMPV 247
           +R+SGFDMAPP +A+L  A AA  GQ+P A P +P  GMFP MFPL TGQ FG L +MP+
Sbjct: 187 QRVSGFDMAPPASAML-AAGAAVTGQVPPAPPTLPGAGMFPNMFPLPTGQSFGGLSMMPI 246

Query: 248 QAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKK 307
           QAMTQQATRHARRVYVGGL PTANEQSVATFFSQVMAA+GGNTAGPGDAVVNVYINHEKK
Sbjct: 247 QAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKK 306

Query: 308 FAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGL 367
           FAFVEMRSVEEASNAM+LDGIIFEGAPVKVRRPSDYNPSLAATLGPSQP+P+LNLAAVGL
Sbjct: 307 FAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGL 366

Query: 368 TPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVY 427
           TPG++GGLEGPDRIFVGGLPYYFTE+QVRELLESFG L+GFDLVKDRETGNSKGYAFCVY
Sbjct: 367 TPGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVY 426

Query: 428 QDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQKLMLQPG 487
           QDLSVTDIACAALNGIKMGDKTLTVRRANQG    KPEQE+VLLHAQQQIA Q++MLQPG
Sbjct: 427 QDLSVTDIACAALNGIKMGDKTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQPG 486

Query: 488 AVSTKVLCLTQVVSPEELINDEDYEDIMEDMRGEGGKFG 523
           AV+T V+CLTQVV+ +EL +DE+Y DIMEDMR EGGKFG
Sbjct: 487 AVATTVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFG 506

[Close]

BLAST of MS000609 vs. TAIR 10
Match: AT4G36690.3 (U2 snRNP auxilliary factor, large subunit, splicing factor )

HSP 1 Score: 625.5 bits (1612), Expect = 4.2e-179
Identity = 375/518 (72.39%), Postives = 420/518 (81.08%), Query Frame = 0


Query: 8   YEGNGEDTDNYGDGFSPQVRGGSHGGHDTHSDSKSQHGSRDYERESSKSRDKEREKGRDR 67
           +EGNG       D    +  GG  G  +   DSK +  SRD+ERE+S+S+D+EREKGRD 
Sbjct: 7   HEGNG----TVADAIYDEENGGRDGEIEDQLDSKPKRESRDHERETSRSKDREREKGRD- 66

Query: 68  EKDRERDRGRGRERDREKSKDGERDREKDRDRDREKDRDRDRDRHHRDRHRDRGERREGG 127
            KDRERD    R   R + +DGE+ +E+ RD+DR+      R   HRD  R+RGERRE G
Sbjct: 67  -KDRERDSEVSR---RSRDRDGEKSKERSRDKDRDHRERHHRSSRHRDHSRERGERRERG 126

Query: 128 RSRDDDDYYRS--RDFDRRRDYDKDREDRHRRRSRSRSKGISEHRSRSPSPSRSRSRSKS 187
             RDDDDY RS  RD DRRRD   DR  R  RRSRSRSK  SE R+RS SPS+S+     
Sbjct: 127 -GRDDDDYRRSRDRDHDRRRD---DRGGRRSRRSRSRSKDRSERRTRSRSPSKSK----- 186

Query: 188 KRISGFDMAPPTTAILPGATAAAAGQMPGATPAIP--GMFPTMFPLATGQPFGALPVMPV 247
           +R+SGFDMAPP +A+L  A AA  GQ+P A P +P  GMFP MFPL TGQ FG L +MP+
Sbjct: 187 QRVSGFDMAPPASAML-AAGAAVTGQVPPAPPTLPGAGMFPNMFPLPTGQSFGGLSMMPI 246

Query: 248 QAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKK 307
           QAMTQQATRHARRVYVGGL PTANEQSVATFFSQVMAA+GGNTAGPGDAVVNVYINHEKK
Sbjct: 247 QAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKK 306

Query: 308 FAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGL 367
           FAFVEMRSVEEASNAM+LDGIIFEGAPVKVRRPSDYNPSLAATLGPSQP+P+LNLAAVGL
Sbjct: 307 FAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGL 366

Query: 368 TPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVY 427
           TPG++GGLEGPDRIFVGGLPYYFTE+QVRELLESFG L+GFDLVKDRETGNSKGYAFCVY
Sbjct: 367 TPGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVY 426

Query: 428 QDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQKLMLQPG 487
           QDLSVTDIACAALNGIKMGDKTLTVRRANQG    KPEQE+VLLHAQQQIA Q++MLQPG
Sbjct: 427 QDLSVTDIACAALNGIKMGDKTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQPG 486

Query: 488 AVSTKVLCLTQVVSPEELINDEDYEDIMEDMRGEGGKF 522
           AV+T V+CLTQVV+ +EL +DE+Y DIMEDMR EGGKF
Sbjct: 487 AVATTVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKF 505

The following BLAST results are available for this feature:

BLAST of MS000609 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150448.1	0.0e+00	99.49	splicing factor U2af large subunit B-like isoform X3 [Momordica charantia]	[more]
XP_022150450.1	0.0e+00	99.32	splicing factor U2af large subunit B-like isoform X4 [Momordica charantia]	[more]
XP_022150446.1	0.0e+00	94.97	splicing factor U2af large subunit B-like isoform X1 [Momordica charantia]	[more]
XP_022150447.1	4.0e-309	94.81	splicing factor U2af large subunit B-like isoform X2 [Momordica charantia]	[more]
XP_022929824.1	1.3e-304	95.58	splicing factor U2af large subunit A-like isoform X4 [Cucurbita moschata]	[more]

BLAST of MS000609 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZR40	9.2e-232	77.25	Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia OX=4092 GN=U2A...	[more]
Q9ZR39	5.4e-224	75.94	Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia OX=4092 GN=U2A...	[more]
Q8L716	9.9e-210	71.12	Splicing factor U2af large subunit B OS=Arabidopsis thaliana OX=3702 GN=U2AF65B ...	[more]
O23212	6.2e-204	71.50	Splicing factor U2af large subunit A OS=Arabidopsis thaliana OX=3702 GN=U2AF65A ...	[more]
Q2QZL4	1.0e-198	71.78	Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]

BLAST of MS000609 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D9H3	0.0e+00	99.49	U2 snRNP auxiliary factor large subunit OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1D8H7	0.0e+00	99.32	U2 snRNP auxiliary factor large subunit OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1DBI7	0.0e+00	94.97	splicing factor U2af large subunit B-like isoform X1 OS=Momordica charantia OX=3...	[more]
A0A6J1DAR5	2.0e-309	94.81	splicing factor U2af large subunit B-like isoform X2 OS=Momordica charantia OX=3...	[more]
A0A6J1EPW8	6.5e-305	95.58	U2 snRNP auxiliary factor large subunit OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of MS000609 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60900.1	7.0e-211	71.12	U2 snRNP auxilliary factor, large subunit, splicing factor	[more]
AT4G36690.1	4.4e-205	71.50	U2 snRNP auxilliary factor, large subunit, splicing factor	[more]
AT4G36690.4	8.9e-198	68.84	U2 snRNP auxilliary factor, large subunit, splicing factor	[more]
AT4G36690.2	1.1e-179	72.45	U2 snRNP auxilliary factor, large subunit, splicing factor	[more]
AT4G36690.3	4.2e-179	72.39	U2 snRNP auxilliary factor, large subunit, splicing factor	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 489..571 e-value: 0.024 score: 23.8 coord: 256..334 e-value: 17.0 score: 1.6
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 376..449 e-value: 9.2E-21 score: 85.0 coord: 256..334 e-value: 6.0E-13 score: 59.0 coord: 489..572 e-value: 0.083 score: 16.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 519..568 e-value: 1.4E-4 score: 21.7 coord: 377..446 e-value: 6.8E-17 score: 61.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 375..453 score: 15.51092
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 255..338 score: 12.696778
IPR006529	U2 snRNP auxilliary factor, large subunit, splicing factor	TIGRFAM	TIGR01642	TIGR01642	coord: 77..583 e-value: 7.6E-181 score: 600.0
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 484..584 e-value: 2.4E-27 score: 97.0
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 250..349 e-value: 2.2E-31 score: 110.3
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 350..465 e-value: 1.9E-21 score: 78.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..196
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..155
None	No IPR available	PANTHER	PTHR23139	RNA-BINDING PROTEIN	coord: 1..584
None	No IPR available	PANTHER	PTHR23139:SF121	U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT	coord: 1..584
None	No IPR available	CDD	cd12232	RRM3_U2AF65	coord: 487..571 e-value: 3.70778E-34 score: 122.665
None	No IPR available	CDD	cd12231	RRM2_U2AF65	coord: 375..451 e-value: 1.65944E-44 score: 150.459
None	No IPR available	CDD	cd12230	RRM1_U2AF65	coord: 254..336 e-value: 3.87071E-41 score: 141.524
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 376..575
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 255..340

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000609.1	MS000609.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding