MS000592 (gene) Bitter gourd (TR) v1

Overview


Name	MS000592
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Location	scaffold93: 62227 .. 62946 (-)
RNA-Seq Expression	MS000592
Synteny	MS000592

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGATTCGCCATTGAAGCCGCCGGTATCGCTCCAGAAGCCGCCGGGATACAAGGATCCGAGCGCGTCCTCAGGTCCGGGGAAGGGCGGGAGGAAGGCGCGGCTGCCGACGTCGTACCAGCCGAAGAAGAAGCGGAGGAACTGCTGCCGGACCTGCTGCTGCGTGCTCTGCTTCCTGATCCTGTTCCTGATCGTGGTCGCAGCGCTGGCCGCCGCGCTGTTCTACCTTCTCTTCGACCCGAAGCTGCCGGTGTTCCACCTGATCTCCTTCCGGATCTCGGATTTCAAGGTGTCGCCCAAGGCGGACGGCTCGTACCTGGACGCGGAGGCCTCCATCCGCGTGGAGTTCAAGAATCCCAACGACAAGCTCGGGATCGTGTACGGGAGGATCGAGTACGACGTGACGGTGGGGGAGATGACGGAGTTCGGGCGGCGGTCGATACCGGGGTTCACGCAGGGGCGGAGGAACTCGACGACGGTGAAGGCGGAGACGGGGGTGAAGAGTAAGCTGCTGGCGGTGGATGACGGGGGGAAGATGTCGTCGTGGTTCCAGAGCAAGACGCTGCCGGTCAAGGTGGAGGCCGACACGGCGGTGGGCCTCGTCGTGCAGGGCTGGTCCATTGGCCCTCTCGCCGTCAGATTGGATTGCGAGTCCAGATTGAAGAGCGTTGAGGCTGGTGACATGCCCGATTGCAACATTCATTTCCTCAGATGGTAC

mRNA sequence

ATGGCGGATTCGCCATTGAAGCCGCCGGTATCGCTCCAGAAGCCGCCGGGATACAAGGATCCGAGCGCGTCCTCAGGTCCGGGGAAGGGCGGGAGGAAGGCGCGGCTGCCGACGTCGTACCAGCCGAAGAAGAAGCGGAGGAACTGCTGCCGGACCTGCTGCTGCGTGCTCTGCTTCCTGATCCTGTTCCTGATCGTGGTCGCAGCGCTGGCCGCCGCGCTGTTCTACCTTCTCTTCGACCCGAAGCTGCCGGTGTTCCACCTGATCTCCTTCCGGATCTCGGATTTCAAGGTGTCGCCCAAGGCGGACGGCTCGTACCTGGACGCGGAGGCCTCCATCCGCGTGGAGTTCAAGAATCCCAACGACAAGCTCGGGATCGTGTACGGGAGGATCGAGTACGACGTGACGGTGGGGGAGATGACGGAGTTCGGGCGGCGGTCGATACCGGGGTTCACGCAGGGGCGGAGGAACTCGACGACGGTGAAGGCGGAGACGGGGGTGAAGAGTAAGCTGCTGGCGGTGGATGACGGGGGGAAGATGTCGTCGTGGTTCCAGAGCAAGACGCTGCCGGTCAAGGTGGAGGCCGACACGGCGGTGGGCCTCGTCGTGCAGGGCTGGTCCATTGGCCCTCTCGCCGTCAGATTGGATTGCGAGTCCAGATTGAAGAGCGTTGAGGCTGGTGACATGCCCGATTGCAACATTCATTTCCTCAGATGGTAC

Coding sequence (CDS)

ATGGCGGATTCGCCATTGAAGCCGCCGGTATCGCTCCAGAAGCCGCCGGGATACAAGGATCCGAGCGCGTCCTCAGGTCCGGGGAAGGGCGGGAGGAAGGCGCGGCTGCCGACGTCGTACCAGCCGAAGAAGAAGCGGAGGAACTGCTGCCGGACCTGCTGCTGCGTGCTCTGCTTCCTGATCCTGTTCCTGATCGTGGTCGCAGCGCTGGCCGCCGCGCTGTTCTACCTTCTCTTCGACCCGAAGCTGCCGGTGTTCCACCTGATCTCCTTCCGGATCTCGGATTTCAAGGTGTCGCCCAAGGCGGACGGCTCGTACCTGGACGCGGAGGCCTCCATCCGCGTGGAGTTCAAGAATCCCAACGACAAGCTCGGGATCGTGTACGGGAGGATCGAGTACGACGTGACGGTGGGGGAGATGACGGAGTTCGGGCGGCGGTCGATACCGGGGTTCACGCAGGGGCGGAGGAACTCGACGACGGTGAAGGCGGAGACGGGGGTGAAGAGTAAGCTGCTGGCGGTGGATGACGGGGGGAAGATGTCGTCGTGGTTCCAGAGCAAGACGCTGCCGGTCAAGGTGGAGGCCGACACGGCGGTGGGCCTCGTCGTGCAGGGCTGGTCCATTGGCCCTCTCGCCGTCAGATTGGATTGCGAGTCCAGATTGAAGAGCGTTGAGGCTGGTGACATGCCCGATTGCAACATTCATTTCCTCAGATGGTAC

Protein sequence

MADSPLKPPVSLQKPPGYKDPSASSGPGKGGRKARLPTSYQPKKKRRNCCRTCCCVLCFLILFLIVVAALAAALFYLLFDPKLPVFHLISFRISDFKVSPKADGSYLDAEASIRVEFKNPNDKLGIVYGRIEYDVTVGEMTEFGRRSIPGFTQGRRNSTTVKAETGVKSKLLAVDDGGKMSSWFQSKTLPVKVEADTAVGLVVQGWSIGPLAVRLDCESRLKSVEAGDMPDCNIHFLRWY

Homology

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BLAST of MS000592 vs. NCBI nr
Match: XP_022150413.1 (NDR1/HIN1-like protein 6 [Momordica charantia] >XP_022150414.1 NDR1/HIN1-like protein 6 [Momordica charantia])

HSP 1 Score: 478.4 bits (1230), Expect = 3.6e-131
Identity = 238/239 (99.58%), Postives = 239/239 (100.00%), Query Frame = 0


Query: 1   MADSPLKPPVSLQKPPGYKDPSASSGPGKGGRKARLPTSYQPKKKRRNCCRTCCCVLCFL 60
           MADSPLKPPVSLQKPPGYKDPSASSGPGKGGRKARLPTSYQPKKKRRNCCRTCCCVLCFL
Sbjct: 1   MADSPLKPPVSLQKPPGYKDPSASSGPGKGGRKARLPTSYQPKKKRRNCCRTCCCVLCFL 60

Query: 61  ILFLIVVAALAAALFYLLFDPKLPVFHLISFRISDFKVSPKADGSYLDAEASIRVEFKNP 120
           ILFLIVVAALA+ALFYLLFDPKLPVFHLISFRISDFKVSPKADGSYLDAEASIRVEFKNP
Sbjct: 61  ILFLIVVAALASALFYLLFDPKLPVFHLISFRISDFKVSPKADGSYLDAEASIRVEFKNP 120

Query: 121 NDKLGIVYGRIEYDVTVGEMTEFGRRSIPGFTQGRRNSTTVKAETGVKSKLLAVDDGGKM 180
           NDKLGIVYGRIEYDVTVGEMTEFGRRSIPGFTQGRRNSTTVKAETGVKSKLLAVDDGGKM
Sbjct: 121 NDKLGIVYGRIEYDVTVGEMTEFGRRSIPGFTQGRRNSTTVKAETGVKSKLLAVDDGGKM 180

Query: 181 SSWFQSKTLPVKVEADTAVGLVVQGWSIGPLAVRLDCESRLKSVEAGDMPDCNIHFLRW 240
           SSWFQSKTLPVKVEADTAVGLVVQGWSIGPLAVRLDCESRLKSVEAGDMPDCNIHFLRW
Sbjct: 181 SSWFQSKTLPVKVEADTAVGLVVQGWSIGPLAVRLDCESRLKSVEAGDMPDCNIHFLRW 239

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BLAST of MS000592 vs. NCBI nr
Match: XP_038886533.1 (NDR1/HIN1-like protein 6 [Benincasa hispida])

HSP 1 Score: 340.5 bits (872), Expect = 1.2e-89
Identity = 169/248 (68.15%), Postives = 202/248 (81.45%), Query Frame = 0


Query: 1   MADSPLKPPVSLQKPPGYKDPSASSG---------PGKGGRKARLPTSYQPKKKRRNCCR 60
           MADSPLK P  LQKPPGYKDP+ S           P     K RLP+SY+PK++RRNCCR
Sbjct: 1   MADSPLKKP-PLQKPPGYKDPNPSGSSSTSSAPHLPPATRNKPRLPSSYKPKRRRRNCCR 60

Query: 61  TCCCVLCFLILFLIVVAALAAALFYLLFDPKLPVFHLISFRISDFKVSPKADGSYLDAEA 120
           TCCCV CFLILFLIVVAALA ALFYL++DPKLPVFHL++FRIS FKVS   DGS+LDA+ 
Sbjct: 61  TCCCVFCFLILFLIVVAALAIALFYLIYDPKLPVFHLLAFRISSFKVSATPDGSFLDAQV 120

Query: 121 SIRVEFKNPNDKLGIVYGRIEYDVTVGEMTEFGRRSIPGFTQGRRNSTTVKAETGVKSKL 180
           SIRVEFKNPNDKL I YG IEYDVTVG+ T+FGRR + GFTQGRR++TTVKAE  VK+K+
Sbjct: 121 SIRVEFKNPNDKLAIRYGAIEYDVTVGQSTDFGRRELAGFTQGRRSTTTVKAEAAVKNKM 180

Query: 181 LAVDDGGKMSSWFQSKTLPVKVEADTAVGLVVQGWSIGPLAVRLDCESRLKSVEAGDMPD 240
           LAV+DG ++ S FQSK++ VKVEA+T VG+V+QGW +GP+ V+LDCES+LK++E GDMP 
Sbjct: 181 LAVEDGARLLSRFQSKSMEVKVEAETTVGVVLQGWGLGPINVKLDCESKLKNIEDGDMPI 240

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BLAST of MS000592 vs. NCBI nr
Match: KAG6592899.1 (NDR1/HIN1-like protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 339.3 bits (869), Expect = 2.6e-89
Identity = 166/247 (67.21%), Postives = 201/247 (81.38%), Query Frame = 0


Query: 1   MADSPLKPPVSLQKPPGYKDPSAS--------SGPGKGGRKARLPTSYQPKKKRRNCCRT 60
           MADSPLKPP  LQ+PPGYKDPSAS        S P     K RLPTSY+PKK++ +CCR 
Sbjct: 1   MADSPLKPP--LQRPPGYKDPSASGSSASIPVSKPPAARNKPRLPTSYKPKKRKSSCCRL 60

Query: 61  CCCVLCFLILFLIVVAALAAALFYLLFDPKLPVFHLISFRISDFKVSPKADGSYLDAEAS 120
           CCCV CFLILFLIVV +LA ALFYL+FDPKLP+FHL++FRIS FKV+P  DGSYLDA+ S
Sbjct: 61  CCCVFCFLILFLIVVVSLAGALFYLIFDPKLPLFHLLAFRISSFKVAPTPDGSYLDAQVS 120

Query: 121 IRVEFKNPNDKLGIVYGRIEYDVTVGEMTEFGRRSIPGFTQGRRNSTTVKAETGVKSKLL 180
           IRVEFKNPNDKL I YG+IEYDV VG+  EFG+R + GFTQGRR++TTVKA++GVK K+L
Sbjct: 121 IRVEFKNPNDKLAIKYGKIEYDVMVGQAAEFGQRELQGFTQGRRSTTTVKADSGVKGKML 180

Query: 181 AVDDGGKMSSWFQSKTLPVKVEADTAVGLVVQGWSIGPLAVRLDCESRLKSVEAGDMPDC 240
            V+D  ++ S +QSK + VKVEA TAVG+V QGW++GP+ V+LDCES+LK++EAGDMP C
Sbjct: 181 GVEDSTRLVSKYQSKAMEVKVEARTAVGVVAQGWAVGPIPVKLDCESKLKNIEAGDMPTC 240

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BLAST of MS000592 vs. NCBI nr
Match: XP_022960198.1 (NDR1/HIN1-like protein 6 [Cucurbita moschata] >XP_023515084.1 NDR1/HIN1-like protein 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 339.3 bits (869), Expect = 2.6e-89
Identity = 166/247 (67.21%), Postives = 201/247 (81.38%), Query Frame = 0


Query: 1   MADSPLKPPVSLQKPPGYKDPSAS--------SGPGKGGRKARLPTSYQPKKKRRNCCRT 60
           MADSPLKPP  LQ+PPGYKDPSAS        S P     K RLPTSY+PKK++ +CCR 
Sbjct: 1   MADSPLKPP--LQRPPGYKDPSASGSSASIPVSKPPAARNKPRLPTSYKPKKRKSSCCRL 60

Query: 61  CCCVLCFLILFLIVVAALAAALFYLLFDPKLPVFHLISFRISDFKVSPKADGSYLDAEAS 120
           CCCV CFLILFLIVV +LA ALFYL+FDPKLP+FHL++FRIS FKV+P  DGSYLDA+ S
Sbjct: 61  CCCVFCFLILFLIVVVSLAGALFYLIFDPKLPLFHLLAFRISSFKVAPTPDGSYLDAQVS 120

Query: 121 IRVEFKNPNDKLGIVYGRIEYDVTVGEMTEFGRRSIPGFTQGRRNSTTVKAETGVKSKLL 180
           IRVEFKNPNDKL I YG+IEYDV VG+  EFG+R + GFTQGRR++TTVKA++GVK K+L
Sbjct: 121 IRVEFKNPNDKLAIKYGKIEYDVMVGQAAEFGQRELQGFTQGRRSTTTVKADSGVKGKML 180

Query: 181 AVDDGGKMSSWFQSKTLPVKVEADTAVGLVVQGWSIGPLAVRLDCESRLKSVEAGDMPDC 240
            V+D  ++ S +QSK + VKVEA TAVG+V QGW++GP+ V+LDCES+LK++EAGDMP C
Sbjct: 181 GVEDSTRLVSKYQSKAMEVKVEARTAVGVVAQGWAVGPIPVKLDCESKLKNIEAGDMPTC 240

[Close]

BLAST of MS000592 vs. NCBI nr
Match: XP_023005046.1 (NDR1/HIN1-like protein 13 [Cucurbita maxima])

HSP 1 Score: 337.4 bits (864), Expect = 1.0e-88
Identity = 165/247 (66.80%), Postives = 201/247 (81.38%), Query Frame = 0


Query: 1   MADSPLKPPVSLQKPPGYKDPSAS--------SGPGKGGRKARLPTSYQPKKKRRNCCRT 60
           MADSPLKPP  LQ+PPGYKDPSAS        S P     K RLPTSY+PKK++ +CCR 
Sbjct: 85  MADSPLKPP--LQRPPGYKDPSASGSSASIPVSKPPAARNKPRLPTSYKPKKRKSSCCRL 144

Query: 61  CCCVLCFLILFLIVVAALAAALFYLLFDPKLPVFHLISFRISDFKVSPKADGSYLDAEAS 120
           CCCV CFLILFLIVV +LA ALFYL+FDPKLP+FHL++FRIS FKV+P  DGSYLDA+ S
Sbjct: 145 CCCVFCFLILFLIVVVSLAGALFYLIFDPKLPLFHLLAFRISSFKVAPTPDGSYLDAQVS 204

Query: 121 IRVEFKNPNDKLGIVYGRIEYDVTVGEMTEFGRRSIPGFTQGRRNSTTVKAETGVKSKLL 180
           IRVEFKNPNDKL I YG+IEYDV VG+  EFG+R + GFTQ RR++TTVKA++GVK K+L
Sbjct: 205 IRVEFKNPNDKLAIRYGKIEYDVMVGQAAEFGQRELQGFTQARRSTTTVKADSGVKGKML 264

Query: 181 AVDDGGKMSSWFQSKTLPVKVEADTAVGLVVQGWSIGPLAVRLDCESRLKSVEAGDMPDC 240
            V+D  ++ S +QSK + VKVEA TAVG+V QGW++GP++V+LDCES+LK++EAGDMP C
Sbjct: 265 GVEDSTRLVSKYQSKAMEVKVEARTAVGVVAQGWAVGPISVKLDCESKLKNIEAGDMPTC 324

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BLAST of MS000592 vs. ExPASy Swiss-Prot
Match: Q8LD98 (NDR1/HIN1-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=NHL6 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.9e-10
Identity = 43/124 (34.68%), Postives = 67/124 (54.03%), Query Frame = 0


Query: 42  PKKKRRNCCRTCCCVLCFLILFLIVVAALAAALFYLLFDPKLPVFHLISFRISDFKVSPK 101
           PKK+R  CCR  C   CFL+L ++ V A +  + YL+F PKLP + +   +++ F ++  
Sbjct: 55  PKKRRSCCCRCFCYTFCFLLLLVVAVGA-SIGILYLVFKPKLPDYSIDRLQLTRFALN-- 114

Query: 102 ADGSYLDAEASIRVEFKNPNDKLGIVYGRIEYDVTVGEMT-EFGRRSIPGFTQGRRNSTT 161
              S L    ++ +  KNPN+K+GI Y      +TV  M  +    S+P F QG  N+T 
Sbjct: 115 -QDSSLTTAFNVTITAKNPNEKIGIYY-EDGSKITVWYMEHQLSNGSLPKFYQGHENTTV 173

Query: 162 VKAE 165
           +  E
Sbjct: 175 IYVE 173

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BLAST of MS000592 vs. ExPASy Swiss-Prot
Match: Q9ZVD2 (NDR1/HIN1-like protein 13 OS=Arabidopsis thaliana OX=3702 GN=NHL13 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.0e-08
Identity = 45/185 (24.32%), Postives = 82/185 (44.32%), Query Frame = 0


Query: 43  KKKRRNCCRTCCCVLCFLILFLIVVAALAAALFYLLFDPKLPVFHLISFRISDFKVSPKA 102
           KK  R+ CR C C     +  LIV+A ++ A+ YL++ P+ P + +  F +S   ++   
Sbjct: 64  KKTNRSNCRCCFCSFLAAVFILIVLAGISFAVLYLIYRPEAPKYSIEGFSVSGINLN--- 123

Query: 103 DGSYLDAEASIRVEFKNPNDKLGIVYGR-IEYDVTVGEMTEFGRRSIPGFTQGRRNSTTV 162
             S +    ++ V  +N N K+G+ Y +    DV   ++ +     +P F Q  +N T V
Sbjct: 124 STSPISPSFNVTVRSRNGNGKIGVYYEKESSVDVYYNDV-DISNGVMPVFYQPAKNVTVV 183

Query: 163 KAETGVKSKLLAVDDGGKMSSWFQSKTLPVKVEADTAVGLVVQGWSIGPLAVRLDCESRL 222
           K         L      +M +    KT+P K++    V +         + V +DC+  +
Sbjct: 184 KLVLSGSKIQLTSGMRKEMRNEVSKKTVPFKLKIKAPVKIKFGSVKTWTMIVNVDCDVTV 243

Query: 223 KSVEA 227
             + A
Sbjct: 244 DKLTA 244

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BLAST of MS000592 vs. ExPASy Swiss-Prot
Match: Q9SJ52 (NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana OX=3702 GN=NHL10 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 4.6e-04
Identity = 36/127 (28.35%), Postives = 62/127 (48.82%), Query Frame = 0


Query: 37  PTSYQPKKKRRNCCRTCCCVLCF--LILFLIVVAALAAALFYLLFDPKLPVFHLISFRIS 96
           P  Y  +   R C   CC +  F  +I+ LIV+  +AA +F+L+  P+   FH+    ++
Sbjct: 21  PKGYYRRGHGRGC--GCCLLSLFVKVIISLIVILGVAALIFWLIVRPRAIKFHVTDASLT 80

Query: 97  DFKVSPKADGSYLDAEASIRVEFKNPNDKLGIVYGRIEYDVTVGEMTEFGRRSIPGFTQG 156
            F     +  + L    ++ V  +NPN ++G+ Y RIE      E   F   ++  F QG
Sbjct: 81  RF--DHTSPDNILRYNLALTVPVRNPNKRIGLYYDRIEAHAYY-EGKRFSTITLTPFYQG 140

Query: 157 RRNSTTV 162
            +N+T +
Sbjct: 141 HKNTTVL 142

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BLAST of MS000592 vs. ExPASy TrEMBL
Match: A0A6J1D9D9 (NDR1/HIN1-like protein 6 OS=Momordica charantia OX=3673 GN=LOC111018575 PE=4 SV=1)

HSP 1 Score: 478.4 bits (1230), Expect = 1.7e-131
Identity = 238/239 (99.58%), Postives = 239/239 (100.00%), Query Frame = 0


Query: 1   MADSPLKPPVSLQKPPGYKDPSASSGPGKGGRKARLPTSYQPKKKRRNCCRTCCCVLCFL 60
           MADSPLKPPVSLQKPPGYKDPSASSGPGKGGRKARLPTSYQPKKKRRNCCRTCCCVLCFL
Sbjct: 1   MADSPLKPPVSLQKPPGYKDPSASSGPGKGGRKARLPTSYQPKKKRRNCCRTCCCVLCFL 60

Query: 61  ILFLIVVAALAAALFYLLFDPKLPVFHLISFRISDFKVSPKADGSYLDAEASIRVEFKNP 120
           ILFLIVVAALA+ALFYLLFDPKLPVFHLISFRISDFKVSPKADGSYLDAEASIRVEFKNP
Sbjct: 61  ILFLIVVAALASALFYLLFDPKLPVFHLISFRISDFKVSPKADGSYLDAEASIRVEFKNP 120

Query: 121 NDKLGIVYGRIEYDVTVGEMTEFGRRSIPGFTQGRRNSTTVKAETGVKSKLLAVDDGGKM 180
           NDKLGIVYGRIEYDVTVGEMTEFGRRSIPGFTQGRRNSTTVKAETGVKSKLLAVDDGGKM
Sbjct: 121 NDKLGIVYGRIEYDVTVGEMTEFGRRSIPGFTQGRRNSTTVKAETGVKSKLLAVDDGGKM 180

Query: 181 SSWFQSKTLPVKVEADTAVGLVVQGWSIGPLAVRLDCESRLKSVEAGDMPDCNIHFLRW 240
           SSWFQSKTLPVKVEADTAVGLVVQGWSIGPLAVRLDCESRLKSVEAGDMPDCNIHFLRW
Sbjct: 181 SSWFQSKTLPVKVEADTAVGLVVQGWSIGPLAVRLDCESRLKSVEAGDMPDCNIHFLRW 239

[Close]

BLAST of MS000592 vs. ExPASy TrEMBL
Match: A0A6J1H856 (NDR1/HIN1-like protein 6 OS=Cucurbita moschata OX=3662 GN=LOC111461008 PE=4 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 1.3e-89
Identity = 166/247 (67.21%), Postives = 201/247 (81.38%), Query Frame = 0


Query: 1   MADSPLKPPVSLQKPPGYKDPSAS--------SGPGKGGRKARLPTSYQPKKKRRNCCRT 60
           MADSPLKPP  LQ+PPGYKDPSAS        S P     K RLPTSY+PKK++ +CCR 
Sbjct: 1   MADSPLKPP--LQRPPGYKDPSASGSSASIPVSKPPAARNKPRLPTSYKPKKRKSSCCRL 60

Query: 61  CCCVLCFLILFLIVVAALAAALFYLLFDPKLPVFHLISFRISDFKVSPKADGSYLDAEAS 120
           CCCV CFLILFLIVV +LA ALFYL+FDPKLP+FHL++FRIS FKV+P  DGSYLDA+ S
Sbjct: 61  CCCVFCFLILFLIVVVSLAGALFYLIFDPKLPLFHLLAFRISSFKVAPTPDGSYLDAQVS 120

Query: 121 IRVEFKNPNDKLGIVYGRIEYDVTVGEMTEFGRRSIPGFTQGRRNSTTVKAETGVKSKLL 180
           IRVEFKNPNDKL I YG+IEYDV VG+  EFG+R + GFTQGRR++TTVKA++GVK K+L
Sbjct: 121 IRVEFKNPNDKLAIKYGKIEYDVMVGQAAEFGQRELQGFTQGRRSTTTVKADSGVKGKML 180

Query: 181 AVDDGGKMSSWFQSKTLPVKVEADTAVGLVVQGWSIGPLAVRLDCESRLKSVEAGDMPDC 240
            V+D  ++ S +QSK + VKVEA TAVG+V QGW++GP+ V+LDCES+LK++EAGDMP C
Sbjct: 181 GVEDSTRLVSKYQSKAMEVKVEARTAVGVVAQGWAVGPIPVKLDCESKLKNIEAGDMPTC 240

[Close]

BLAST of MS000592 vs. ExPASy TrEMBL
Match: A0A6J1KTU7 (NDR1/HIN1-like protein 13 OS=Cucurbita maxima OX=3661 GN=LOC111498155 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 4.8e-89
Identity = 165/247 (66.80%), Postives = 201/247 (81.38%), Query Frame = 0


Query: 1   MADSPLKPPVSLQKPPGYKDPSAS--------SGPGKGGRKARLPTSYQPKKKRRNCCRT 60
           MADSPLKPP  LQ+PPGYKDPSAS        S P     K RLPTSY+PKK++ +CCR 
Sbjct: 85  MADSPLKPP--LQRPPGYKDPSASGSSASIPVSKPPAARNKPRLPTSYKPKKRKSSCCRL 144

Query: 61  CCCVLCFLILFLIVVAALAAALFYLLFDPKLPVFHLISFRISDFKVSPKADGSYLDAEAS 120
           CCCV CFLILFLIVV +LA ALFYL+FDPKLP+FHL++FRIS FKV+P  DGSYLDA+ S
Sbjct: 145 CCCVFCFLILFLIVVVSLAGALFYLIFDPKLPLFHLLAFRISSFKVAPTPDGSYLDAQVS 204

Query: 121 IRVEFKNPNDKLGIVYGRIEYDVTVGEMTEFGRRSIPGFTQGRRNSTTVKAETGVKSKLL 180
           IRVEFKNPNDKL I YG+IEYDV VG+  EFG+R + GFTQ RR++TTVKA++GVK K+L
Sbjct: 205 IRVEFKNPNDKLAIRYGKIEYDVMVGQAAEFGQRELQGFTQARRSTTTVKADSGVKGKML 264

Query: 181 AVDDGGKMSSWFQSKTLPVKVEADTAVGLVVQGWSIGPLAVRLDCESRLKSVEAGDMPDC 240
            V+D  ++ S +QSK + VKVEA TAVG+V QGW++GP++V+LDCES+LK++EAGDMP C
Sbjct: 265 GVEDSTRLVSKYQSKAMEVKVEARTAVGVVAQGWAVGPISVKLDCESKLKNIEAGDMPTC 324

[Close]

BLAST of MS000592 vs. ExPASy TrEMBL
Match: A0A0A0KCD8 (LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G042460 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 4.8e-89
Identity = 170/250 (68.00%), Postives = 203/250 (81.20%), Query Frame = 0


Query: 1   MADSPLKPPVSLQKPPGYKD--------PSASSG---PGKGGRKARLPTSYQPKKKRRNC 60
           MAD PLKPP  LQKPPGYKD         SAS+    P     K R P+SY+PKK++RNC
Sbjct: 1   MADLPLKPP--LQKPPGYKDHNTTATSSSSASTATHLPPPLRPKPRPPSSYKPKKRKRNC 60

Query: 61  CRTCCCVLCFLILFLIVVAALAAALFYLLFDPKLPVFHLISFRISDFKVSPKADGSYLDA 120
           CRTCCC+ CFLILFLIVVAALA ALFYLL+DPKLPVFHL++FRIS FKVS   DGS+LD+
Sbjct: 61  CRTCCCIFCFLILFLIVVAALALALFYLLYDPKLPVFHLLAFRISSFKVSTTPDGSFLDS 120

Query: 121 EASIRVEFKNPNDKLGIVYGRIEYDVTVGEMTEFGRRSIPGFTQGRRNSTTVKAETGVKS 180
           + SIRVEFKNPN+KL I YG+IEYDVTVG+ TEFGRR + GFTQGRR++TTVKAE  VK+
Sbjct: 121 QVSIRVEFKNPNEKLSIKYGKIEYDVTVGQATEFGRRELAGFTQGRRSTTTVKAEAAVKN 180

Query: 181 KLLAVDDGGKMSSWFQSKTLPVKVEADTAVGLVVQGWSIGPLAVRLDCESRLKSVEAGDM 240
           K+LAV+DGG++ S FQSK L VKVEA+T VG+VVQGW +GP+ V+LDCES+LK+++ GDM
Sbjct: 181 KMLAVEDGGRLLSKFQSKALEVKVEAETEVGVVVQGWGLGPITVKLDCESKLKNIDGGDM 240

[Close]

BLAST of MS000592 vs. ExPASy TrEMBL
Match: A0A1S3BDG3 (uncharacterized protein LOC103488682 OS=Cucumis melo OX=3656 GN=LOC103488682 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 1.8e-88
Identity = 168/250 (67.20%), Postives = 202/250 (80.80%), Query Frame = 0


Query: 1   MADSPLKPPVSLQKPPGYKD-----PSASSG------PGKGGRKARLPTSYQPKKKRRNC 60
           MAD P+KPP  LQKPPGYKD      S+SS       P     K RLP+SY+PKK++RNC
Sbjct: 1   MADLPMKPP--LQKPPGYKDHHTAATSSSSASTVTHLPPPPRSKPRLPSSYKPKKRKRNC 60

Query: 61  CRTCCCVLCFLILFLIVVAALAAALFYLLFDPKLPVFHLISFRISDFKVSPKADGSYLDA 120
           CRTCCC+ CFLILFLIVVAALA ALFYL++DPKLPVFHL++FRIS FKVS   DGS+LDA
Sbjct: 61  CRTCCCIFCFLILFLIVVAALALALFYLIYDPKLPVFHLLAFRISTFKVSATPDGSFLDA 120

Query: 121 EASIRVEFKNPNDKLGIVYGRIEYDVTVGEMTEFGRRSIPGFTQGRRNSTTVKAETGVKS 180
           + SIRVEFKNPNDKL I YG+IEYDV VG+ TEFGRR + GFTQ RR++TTVKAE  VK+
Sbjct: 121 QVSIRVEFKNPNDKLSIKYGKIEYDVMVGQATEFGRRELAGFTQDRRSTTTVKAEAAVKN 180

Query: 181 KLLAVDDGGKMSSWFQSKTLPVKVEADTAVGLVVQGWSIGPLAVRLDCESRLKSVEAGDM 240
           K+LAV+DG ++ S FQSK L VKVEA+TAVG+V+QGW +GP+ V+LDCE++LK++E GDM
Sbjct: 181 KMLAVEDGARLLSKFQSKALEVKVEAETAVGVVIQGWGLGPITVKLDCETKLKNIEGGDM 240

[Close]

BLAST of MS000592 vs. TAIR 10
Match: AT2G46300.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 191.0 bits (484), Expect = 1.1e-48
Identity = 114/250 (45.60%), Postives = 150/250 (60.00%), Query Frame = 0


Query: 1   MADSPLKPPVSLQKPPGYKDPSASSGP-------GKGGRKA-RLPTSYQPKKKRRNCCRT 60
           MAD  + P   LQKPPGY+DP+ SS P        +  RKA  +PTSY+PKKKRR+CCR 
Sbjct: 1   MADYQMNP--VLQKPPGYRDPNMSSPPPPPPPIQQQPMRKAVPMPTSYRPKKKRRSCCRF 60

Query: 61  CCCVLCFLILFLIVVAALAAALFYLLFDPKLPVFHLISFRISDFKVSPKADGSYLDAEAS 120
           CCC +C  ++  I +  +  A+FYL FDPKLP F L SFR+  FK++   DG+ L A A 
Sbjct: 61  CCCCICITLVLFIFLLLVGTAVFYLWFDPKLPTFSLASFRLDGFKLADDPDGASLSATAV 120

Query: 121 IRVEFKNPNDKLGIVYGRIEYDVTVG---EMTEFGRRSIPGFTQGRRNSTTVKAETGVKS 180
            RVE KNPN KL   YG    D++VG   + T  G  ++ GF QG +NST+VK ET VK+
Sbjct: 121 ARVEMKNPNSKLVFYYGNTAVDLSVGSGNDETGMGETTMNGFRQGPKNSTSVKVETTVKN 180

Query: 181 KLLAVDDGGKMSSWFQSKTLPVKVEADTAVGLVVQGWSIGPLAVRLDCESRLKSVEAGDM 240
           +L+      ++++ FQSK L + V A T VGL V G  IG LAV L C     +    D 
Sbjct: 181 QLVERGLAKRLAAKFQSKDLVINVVAKTKVGLGVGGIKIGMLAVNLRCGGVSLNKLDTDS 240

[Close]

BLAST of MS000592 vs. TAIR 10
Match: AT1G01453.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 124.8 bits (312), Expect = 9.4e-29
Identity = 88/251 (35.06%), Postives = 125/251 (49.80%), Query Frame = 0


Query: 2   ADSPLKPPVSLQKPPGYKD----PSASSGPGKGGRKARLPTSYQPKKKRRNC--CRTCCC 61
           A+ PL+P  +LQKPPG++D    PSA    G      R P    P  K+R C  CR  CC
Sbjct: 16  AEKPLQP--ALQKPPGFRDQQNQPSAPPS-GTATLPRRRPRPIHPADKKRRCSFCRVFCC 75

Query: 62  VLCFLILFLIVVAALAAALFYLLFDPKLPVFHLISFRISDFKVSP-KADG--SYLDAEAS 121
            +C L   ++++  +A A+F+L + PKLPV  L SF+IS+F  S  K+D   S+L A+ +
Sbjct: 76  CVCILFAVILLLILIAVAVFFLWYSPKLPVVRLASFKISNFNFSDGKSDDGWSFLSADTT 135

Query: 122 IRVEFKNPNDKLGIVYGRIEYDVTVGEM---TEFGRRSIPGFTQGRRNSTTVKAETGVKS 181
             ++F+NPN KL   YG  +  V +GE    T      + GF +   N T V   T V+ 
Sbjct: 136 SVLDFRNPNGKLTFYYGDTDVAVILGEKDFETNLESTKVKGFIEKPGNRTAVIVPTTVRK 195

Query: 182 KLLAVDDGGKMSSWFQSKTLPVKVEADTAVGLVVQGWSIGPLAVRLDCESRLKSVEAGDM 241
           + +      ++    +SK L V V A T VGL V    I  + V L C   +       M
Sbjct: 196 RQVDDPTAKRLQVELKSKKLLVTVTAKTKVGLAVGSRKIVTVGVSLRCGGVILQTLDSKM 255

[Close]

BLAST of MS000592 vs. TAIR 10
Match: AT4G01110.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01453.1); Has 273 Blast hits to 272 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 273; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 124.0 bits (310), Expect = 1.6e-28
Identity = 92/258 (35.66%), Postives = 136/258 (52.71%), Query Frame = 0


Query: 1   MADSPLKPPVSLQKPPGYKD-----------PSASSGPGKGGRKARLPTSYQPKKKRR-N 60
           MA   L  PV LQKPPGY++            S+SS   +   K  +P ++ P KKR+ +
Sbjct: 1   MAGETLLKPV-LQKPPGYRELHSQPQTPLGSSSSSSSMLRRPPKHAIPAAFYPTKKRQWS 60

Query: 61  CCRTCCCVLCFLILFLIVVAALAAALFYLLFDPKLPVFHLISFRISDFKVS--PKADG-S 120
            CR  CC +C  +  +I++  L  ++F+L + P+LPV  L SFR+S+F  S     DG S
Sbjct: 61  RCRVFCCCVCITVAIVILLLILTVSVFFLYYSPRLPVVRLSSFRVSNFNFSGGKAGDGLS 120

Query: 121 YLDAEASIRVEFKNPNDKLGIVYGRIEYDVTVGE---MTEFGRRSIPGFTQGRRNSTTVK 180
            L AEA+ R++F+NPN KL   YG ++  V+VGE    T  G   + GF +   N T V 
Sbjct: 121 QLTAEATARLDFRNPNGKLRYYYGNVDVAVSVGEDDFETSLGSTKVKGFVEKPGNRTVVI 180

Query: 181 AETGVKSKLLAVDDGGKMSSWFQSKTLPVKVEADTAVGLVVQGWSIGPLAVRLDCES-RL 240
               VK + +      ++ +  +SK L VKV A T VGL V    I  + V + C   RL
Sbjct: 181 VPIKVKKQQVDDPTVKRLRADMKSKKLVVKVMAKTKVGLGVGRRKIVTVGVTISCGGVRL 240

[Close]

BLAST of MS000592 vs. TAIR 10
Match: AT1G01453.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 122.1 bits (305), Expect = 6.1e-28
Identity = 87/250 (34.80%), Postives = 124/250 (49.60%), Query Frame = 0


Query: 2   ADSPLKPPVSLQKPPGYKD----PSASSGPGKGGRKARLPTSYQPKKKRRNC--CRTCCC 61
           A+ PL+P  +LQKPPG++D    PSA    G      R P    P  K+R C  CR  CC
Sbjct: 16  AEKPLQP--ALQKPPGFRDQQNQPSAPPS-GTATLPRRRPRPIHPADKKRRCSFCRVFCC 75

Query: 62  VLCFLILFLIVVAALAAALFYLLFDPKLPVFHLISFRISDFKVSP-KADG--SYLDAEAS 121
            +C L   ++++  +A A+F+L + PKLPV  L SF+IS+F  S  K+D   S+L A+ +
Sbjct: 76  CVCILFAVILLLILIAVAVFFLWYSPKLPVVRLASFKISNFNFSDGKSDDGWSFLSADTT 135

Query: 122 IRVEFKNPNDKLGIVYGRIEYDVTVGEM---TEFGRRSIPGFTQGRRNSTTVKAETGVKS 181
             ++F+NPN KL   YG  +  V +GE    T      + GF +   N T V   T V+ 
Sbjct: 136 SVLDFRNPNGKLTFYYGDTDVAVILGEKDFETNLESTKVKGFIEKPGNRTAVIVPTTVRK 195

Query: 182 KLLAVDDGGKMSSWFQSKTLPVKVEADTAVGLVVQGWSIGPLAVRLDCESRLKSVEAGDM 240
           + +      ++    +SK L V V A T VGL V    I  + V L C   +       M
Sbjct: 196 RQVDDPTAKRLQVELKSKKLLVTVTAKTKVGLAVGSRKIVTVGVSLRCGGVILQTLDSKM 255

[Close]

BLAST of MS000592 vs. TAIR 10
Match: AT1G17620.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 72.0 bits (175), Expect = 7.3e-13
Identity = 50/192 (26.04%), Postives = 92/192 (47.92%), Query Frame = 0


Query: 35  RLPTSYQPKKKRRNCCRTCCCVLCFLILFLIVVAALAAALFYLLFDPKLPVFHLISFRIS 94
           R P   +     R CC  CCC   F+I+ L+++ A A+A+ YL++ P+ P     SF +S
Sbjct: 43  RPPAGRRRTSHTRGCCCRCCCWTIFVIILLLLIVAAASAVVYLIYRPQRP-----SFTVS 102

Query: 95  DFKVSPK--ADGSYLDAEASIRVEFKNPNDKLGIVYGRIE---YDVTVG--EMTEFGRRS 154
           + K+S         L    S+ V  +NPN  +G +Y   +   Y  + G  +    G+ +
Sbjct: 103 ELKISTLNFTSAVRLTTAISLSVIARNPNKNVGFIYDVTDITLYKASTGGDDDVVIGKGT 162

Query: 155 IPGFTQGRRNSTTVKAETGVKSKLLAVDDGGKMSSWFQS-KTLPVKVEADTAVGLVVQGW 214
           I  F+ G++N+TT+++  G     L     GK+    ++ K + +K+  ++ V + +   
Sbjct: 163 IAAFSHGKKNTTTLRSTIGSPPDELDEISAGKLKGDLKAKKAVAIKIVLNSKVKVKMGAL 222

Query: 215 SIGPLAVRLDCE 219
                 +R+ CE
Sbjct: 223 KTPKSGIRVTCE 229

The following BLAST results are available for this feature:

BLAST of MS000592 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150413.1	3.6e-131	99.58	NDR1/HIN1-like protein 6 [Momordica charantia] >XP_022150414.1 NDR1/HIN1-like pr...	[more]
XP_038886533.1	1.2e-89	68.15	NDR1/HIN1-like protein 6 [Benincasa hispida]	[more]
KAG6592899.1	2.6e-89	67.21	NDR1/HIN1-like protein 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022960198.1	2.6e-89	67.21	NDR1/HIN1-like protein 6 [Cucurbita moschata] >XP_023515084.1 NDR1/HIN1-like pro...	[more]
XP_023005046.1	1.0e-88	66.80	NDR1/HIN1-like protein 13 [Cucurbita maxima]	[more]

BLAST of MS000592 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LD98	1.9e-10	34.68	NDR1/HIN1-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=NHL6 PE=1 SV=1	[more]
Q9ZVD2	9.0e-08	24.32	NDR1/HIN1-like protein 13 OS=Arabidopsis thaliana OX=3702 GN=NHL13 PE=2 SV=1	[more]
Q9SJ52	4.6e-04	28.35	NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana OX=3702 GN=NHL10 PE=2 SV=1	[more]

BLAST of MS000592 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D9D9	1.7e-131	99.58	NDR1/HIN1-like protein 6 OS=Momordica charantia OX=3673 GN=LOC111018575 PE=4 SV=...	[more]
A0A6J1H856	1.3e-89	67.21	NDR1/HIN1-like protein 6 OS=Cucurbita moschata OX=3662 GN=LOC111461008 PE=4 SV=1	[more]
A0A6J1KTU7	4.8e-89	66.80	NDR1/HIN1-like protein 13 OS=Cucurbita maxima OX=3661 GN=LOC111498155 PE=4 SV=1	[more]
A0A0A0KCD8	4.8e-89	68.00	LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G042460 PE=4 ...	[more]
A0A1S3BDG3	1.8e-88	67.20	uncharacterized protein LOC103488682 OS=Cucumis melo OX=3656 GN=LOC103488682 PE=...	[more]

BLAST of MS000592 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46300.1	1.1e-48	45.60	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT1G01453.2	9.4e-29	35.06	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G01110.1	1.6e-28	35.66	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G01453.1	6.1e-28	34.80	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G17620.1	7.3e-13	26.04	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup	PFAM	PF03168	LEA_2	coord: 115..217 e-value: 1.6E-9 score: 38.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
None	No IPR available	PANTHER	PTHR31234	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY	coord: 1..239
None	No IPR available	PANTHER	PTHR31234:SF48	SUBFAMILY NOT NAMED	coord: 1..239

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000592.1	MS000592.1	mRNA