MS000573 (gene) Bitter gourd (TR) v1

Overview
NameMS000573
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionsquamosa promoter-binding-like protein 7
Locationscaffold64: 928349 .. 928462 (-)
RNA-Seq ExpressionMS000573
SyntenyMS000573
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTAATATGTACAGGGGAAAGTGTAATGGAAATTTGCATTCATGTGCAGACTCCAAGACTTCATTATGTCCATGCTACATGCTTTGAGGCTGGAAAACCATGGAGTTTGTTG

mRNA sequence

TTTTTAATATGTACAGGGGAAAGTGTAATGGAAATTTGCATTCATGTGCAGACTCCAAGACTTCATTATGTCCATGCTACATGCTTTGAGGCTGGAAAACCATGGAGTTTGTTG

Coding sequence (CDS)

TTTTTAATATGTACAGGGGAAAGTGTAATGGAAATTTGCATTCATGTGCAGACTCCAAGACTTCATTATGTCCATGCTACATGCTTTGAGGCTGGAAAACCATGGAGTTTGTTG

Protein sequence

FLICTGESVMEICIHVQTPRLHYVHATCFEAGKPWSLL
Homology
[Close]
BLAST of MS000573 vs. NCBI nr
Match: XP_008438777.1 (PREDICTED: squamosa promoter-binding-like protein 7 [Cucumis melo] >KAA0049430.1 squamosa promoter-binding-like protein 7 [Cucumis melo var. makuwa])

HSP 1 Score: 52.8 bits (125), Expect = 7.8e-04
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 0 

Query: 1   FLICTGESVMEICIHVQTPRLHYVHATCFEAGKP 35
           F    GESVM+I + +Q PRLHYVH TCFEAGKP
Sbjct: 405 FRAMEGESVMKIEMDMQAPRLHYVHPTCFEAGKP 438

[Close]
BLAST of MS000573 vs. NCBI nr
Match: AUO16095.1 (SBP-box transcription factor [Betula luminifera])

HSP 1 Score: 52.8 bits (125), Expect = 7.8e-04
Identity = 21/29 (72.41%), Postives = 24/29 (82.76%), Query Frame = 0 

Query: 6   GESVMEICIHVQTPRLHYVHATCFEAGKP 35
           G SVM++ + VQ PRLHYVH TCFEAGKP
Sbjct: 411 GTSVMKVKVEVQAPRLHYVHPTCFEAGKP 439

[Close]
BLAST of MS000573 vs. NCBI nr
Match: QFR98472.1 (SPL20 [Betula platyphylla])

HSP 1 Score: 52.8 bits (125), Expect = 7.8e-04
Identity = 21/29 (72.41%), Postives = 24/29 (82.76%), Query Frame = 0 

Query: 6   GESVMEICIHVQTPRLHYVHATCFEAGKP 35
           G SVM++ + VQ PRLHYVH TCFEAGKP
Sbjct: 367 GTSVMKVKVEVQAPRLHYVHPTCFEAGKP 395

[Close]
BLAST of MS000573 vs. NCBI nr
Match: TYK16109.1 (squamosa promoter-binding-like protein 7 [Cucumis melo var. makuwa])

HSP 1 Score: 52.8 bits (125), Expect = 7.8e-04
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 0 

Query: 1   FLICTGESVMEICIHVQTPRLHYVHATCFEAGKP 35
           F    GESVM+I + +Q PRLHYVH TCFEAGKP
Sbjct: 405 FRAMEGESVMKIEMDMQAPRLHYVHPTCFEAGKP 438

[Close]
BLAST of MS000573 vs. ExPASy TrEMBL
Match: A0A2I6SEU6 (SBP-box transcription factor OS=Betula luminifera OX=312789 GN=SPL10 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.8e-04
Identity = 21/29 (72.41%), Postives = 24/29 (82.76%), Query Frame = 0 

Query: 6   GESVMEICIHVQTPRLHYVHATCFEAGKP 35
           G SVM++ + VQ PRLHYVH TCFEAGKP
Sbjct: 411 GTSVMKVKVEVQAPRLHYVHPTCFEAGKP 439

[Close]
BLAST of MS000573 vs. ExPASy TrEMBL
Match: A0A5P8SX99 (SPL20 OS=Betula platyphylla OX=78630 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.8e-04
Identity = 21/29 (72.41%), Postives = 24/29 (82.76%), Query Frame = 0 

Query: 6   GESVMEICIHVQTPRLHYVHATCFEAGKP 35
           G SVM++ + VQ PRLHYVH TCFEAGKP
Sbjct: 367 GTSVMKVKVEVQAPRLHYVHPTCFEAGKP 395

[Close]
BLAST of MS000573 vs. ExPASy TrEMBL
Match: A0A5A7U278 (Squamosa promoter-binding-like protein 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G006790 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.8e-04
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 0 

Query: 1   FLICTGESVMEICIHVQTPRLHYVHATCFEAGKP 35
           F    GESVM+I + +Q PRLHYVH TCFEAGKP
Sbjct: 405 FRAMEGESVMKIEMDMQAPRLHYVHPTCFEAGKP 438

[Close]
BLAST of MS000573 vs. ExPASy TrEMBL
Match: A0A5D3D0X5 (Squamosa promoter-binding-like protein 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G00330 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.8e-04
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 0 

Query: 1   FLICTGESVMEICIHVQTPRLHYVHATCFEAGKP 35
           F    GESVM+I + +Q PRLHYVH TCFEAGKP
Sbjct: 405 FRAMEGESVMKIEMDMQAPRLHYVHPTCFEAGKP 438

[Close]
BLAST of MS000573 vs. ExPASy TrEMBL
Match: A0A1S3AX80 (squamosa promoter-binding-like protein 7 OS=Cucumis melo OX=3656 GN=LOC103483784 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.8e-04
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 0 

Query: 1   FLICTGESVMEICIHVQTPRLHYVHATCFEAGKP 35
           F    GESVM+I + +Q PRLHYVH TCFEAGKP
Sbjct: 405 FRAMEGESVMKIEMDMQAPRLHYVHPTCFEAGKP 438

The following BLAST results are available for this feature:
BLAST of MS000573 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008438777.17.8e-0467.65PREDICTED: squamosa promoter-binding-like protein 7 [Cucumis melo] >KAA0049430.1... [more]
AUO16095.17.8e-0472.41SBP-box transcription factor [Betula luminifera][more]
QFR98472.17.8e-0472.41SPL20 [Betula platyphylla][more]
TYK16109.17.8e-0467.65squamosa promoter-binding-like protein 7 [Cucumis melo var. makuwa][more]
BLAST of MS000573 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS000573 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2I6SEU63.8e-0472.41SBP-box transcription factor OS=Betula luminifera OX=312789 GN=SPL10 PE=2 SV=1[more]
A0A5P8SX993.8e-0472.41SPL20 OS=Betula platyphylla OX=78630 PE=2 SV=1[more]
A0A5A7U2783.8e-0467.65Squamosa promoter-binding-like protein 7 OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3D0X53.8e-0467.65Squamosa promoter-binding-like protein 7 OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A1S3AX803.8e-0467.65squamosa promoter-binding-like protein 7 OS=Cucumis melo OX=3656 GN=LOC103483784... [more]
BLAST of MS000573 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS000573.1MS000573.1mRNA