MS000541 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.GTTTCAGCTTTAAGTGAGAAATATGGGCCCGACTTGACAAAAGAGTACATTAGAAATAGGCTTAGAACTTTGAAGAAACAATATCGTATTCTGAAGGAACTTCTTTCTCATGATGGGTTCAGTTGGGATGAGACAAGAAAGATTATCGTTGCAAATAACTCAGTATGGGATGATTATATCAAGGTAAGTGGAAAATTTCAGCATTTGCTTAATAGTGTGAGTGATATTGTTTTGTCATGCATTCGATCATGTTCTTTGAATTAATAGCGTCAAACTTCTATTCTTGTTTCTTTTTTTTTTTCCCTTTTGTTTTGAGGTTAGAAATATTTCATAACTAAAGAGATGTATAATAGGAGAGAAGAAAAGATATTCTACCTCTCACTCATAGCAAGGTGATCACAAAAGTAACTTTCTAATTGGCTTGAATGGGAAAAAATAATGGTTACAAAAATCTCTATGTAAAAGAGCACCACCTAGCTAGGAAAAAATTGTCTTGTCAAAATCCATTTCTCGTTCTTCTCAATGAAATATGTTGGGTTCCTTTCAATCTAAATCTCCTAAAGAGTAATATTCAACCAAGTAGCCTCGGTCTACATCCTAAGAACCAAAAGTAGTATGTTTTTCTTTACTCTTCTTTATTTTTCAGATGAGAAACCATACATTTTATAGATGATATGAAATTACAAAATGAGGGAAGGAAAGTTAAACCACAAGCCAAAGAATTTTCAAGAATTCTTCCAATTGGCACAAAGGTAACAAAGATTGTAGTTGTAAGAAGGTAAACTTTACACTATGAAAGAGCTACAAGAATTACATGACCCAAAAAGTTATCAAATGGCTTTCTATGCTATTGAAAAACCTATTGTTCTTTTCAATCCAAAATCACCTCAAGTATTTTTCTCTTAAAAGATTCTTTGATTTATTTTGTACCGAAGTCCCCAAATTGCTTTAATAGTATTGATCAACAATGTTTTAGCTTTACTTTTTTTTTTTTTTTTTTGATATCCATGAGTGTCTGGACCAGCTTGCGCGCACCTCGACTAATCTCAAGGGGCAATCGCCTGACCCTATAACATTTGGTGCCAGAAAACACATAGGAATTACTAATTCCTAAGGTAGGTGGCCATCATGGGGTTTGAACCCATTTTAGCTTTACTTTTGAATCTATTACCACAAAACAATTGGAAAATATTGTCTTTGGATTCTTTGCCAAAAACCCATGAAATATTTACTGTCATTGGTCCTATCCTCCTTCATTCAGGAGACACAATAACTAGAGTTTAGAGCAAATTCCTGAAGTTCTCTAAAATCATTATATATCATTATGGAATTTCTTCAAAACTGTCATTGAGCAGGTAACTGGAAATTGGAAAATGAGTTACATGATAAAATGGGGAAGAATTAATATATTAAATCCTTTTGCAGCAATGGAGGTTTAATCCGGTTTGGTGGTCTCCTTTAAGAAAGTTCTTGTTTTTAGTAGGTGGTCATCTTTTTTGACTCTTGGTCTTTTACAAAGATCTTTTCGGTTCGGTTGAAGCATGTTGCAGGTTTTGTAGCTTGTAGGATTTGATTTTGGTGGCTTTGGTTAGTTGGTTTTCAAGTGGTTCTTCTCAGCCTTGCTAGATCTTTCCTTGGAGAAATTCGATACTTTATTTATTTTTGGCTCTTGTAATTTTTAGAGATCTTTACTTTATCTGTTTGGTTGTTTGTTCTTTTCACCATCTTTTGGAGTTCTTGAATATTCTTCGATCTTTTCATCTATCAATGAAAAGTTTTTTTCTTGTTAAAAAAAAGAAAAAAAAAATTAACATCCTGTACGAGGGACAATCAATTTAATCGAGTTAAATGGTGAATTGTTCATTGATCACCCATCATGCTGCTTGTAAAGTTTCTGCTCTGATCTCATTTTTTTAATATGATCTAAACTACACTGGATAGGTACTATTCAATGTACAACTGATCATTTCAATGATACTTCCTTTTCTCTGTATCTGATGCATTCAATCTGAACTTTAGCTCCGGAATAACTATATGTTATTATTTTCTCTGTGCATAGGTCAATCTTGAGGCCAGAAGCTTTCGTGGTAGAATTTTTGAAAACTATGATCAACTTTGCATCTTCTTTGGATACTACAATATGGAGACTTTTGACTTCCACGTTGCTATGTATGATGGAAAGAATGGTTGTGAAGGGAATCCCTTGAGGTGGACAAGTGAAATGGACTGTTGTCTCAGTGGAGTCCTCGTGGAGCAAGTGATTCTTGGGAATAAAAATAGTAGATAATGAATTCAAGACTGTTGCATATAATGCAGCTATATTGGCTATAAGAGAGAGGTTTTCTCTTCAATTGACAAAAGATCAAGTTAAGGATCGTTTTAAATCATGGAAAAGAGAGTACTTTGTGCTGAGGAACCTCTTAGACCAAGGTGACTTTGAATGGGATGATCAGCGAAAGATGTTGGTTGCAAAGGACTCAGTATGGGATGTGTCTGTTGAGGTATATAACATTTCAGTTGGTTTTTCACTGGTCCATAGAATGATGTATATGATTTTTCTTTTCTTTTTCTTTTCTCCTCGGACGGTGTTCAAATGGTACTACGTACAATTGAAACAGAGAAACCCAGATGCTAGACTTCTTAGAGGGAGGGTCATTGAGAATTATGATGAATTGTGTATTATTATTGGGTATGACAATCCATCTGAAAGTTCTCTCAATCCTGCTAATGTTAATTTGGATTTAACTGCTAATAATGAAGCTATAAATGCTGGAGTTGTATGCTACAATCAAAGTAACAATGCAGCAGAAAAAGAAAATTTCATAACTTGGACTGAGGAGATGGATACCTGCTTATCGAAGCTGCTAGTTGAGCAAGTGGTTCTTGGAAACAGGATTGAGGAAACATTTAAGACTGCAGCTTACACGGCTGCTCTTACAGTTTTAAATGAGAGATTTGCGTTGGATTTGACTAAAGAAAACATTAGAAGCAGGTTAAACACATGGGAAAAGCAGTATGGAAGAGTGAAGTTACTCCTCTCCCATGATGGGTTTGAGTGGGATGAAAGACACAAGATGGTTGTTGCCAATGACTTTGATTGGACTGCATACATTAAGGTATGTATATATCGTTTTATCTTTCAATATGGTCTGATATTATTCTTTGGATGAAAAATCATCTTTGTTAAGATAAATGAAAGAACAAGATAATGGCAATACAAAAACATGAGTGAGTCCAAATGAGACGAACCCAATCACTGAGGCTTTGTGAAGAATCAAAACTTAAGAAAAATTACAAGATAATTCTGATGGGATGCCCAGAAAGGGCATTAAAGTAGGCCAAACTTTACAGCTCATCCCATTACATAATGTTATTTTGATAGCTGTAGAGCATGTGTCAGTGAGATACATTCTTCTCCATTGTGACTTTCTCACAAGTTAAGGGTCATTTTATGTTTGTTGGGTTACTAAAAAATATATGGTAAATTTAATATTTTATAGATTCCTAACACTCCCACACACCCGGAGGTTTAGAGAACCTTTTGCTCTGATATCATATTAAATTACTAATGAATCTAAAAGTTTAAATTGATGGGTTACCGTGAATATAATCCTTTATATGTGTATTCTCTAGTTAGTTGAGATATCTTTGAAATCAACTGGTGAAAAGAGAAAGCCTTTTGGATATGTCCAGTTTCAACTCTGTGTTTGACGTTTTGTTGGAAGGAAGTTAATTGCATTTTCTGAGTATGTAGACTGAGAAATTTGTTCTTCACATTTTGATTTAAGTACGTAAATCAAATGAGATTATGTCTGGTTCTTTGTACTCTAAATGGTCACATTTCTTGTACTATACCAAAATTAGATTGCTTAACCATGGAGTAGGGAGGGTTTTTGTTGGAGGATTCAGAGTTGATGAACAGGGTTCATCTTATCAATTTAATCATGCAATTTCCTTAATTGATGATGAACGCTGGATTTTATATTTCTTCTCATCTAAAACCTCTTATTAATGTAGATGTTAAATTATAACTTTTACTTTTACCATTCTATATTGTTTTTCTGTTTATTGATTTTGGCTAAGGACATGTGAAATATTGCACATTTGCTCATTGCTTTTCAACACACATTCCAGAAACACCCCGATGACCAGGACTTGCGAGCAAAATCGATCGACAATTACAATGAGCTGTGTATGATTTTTGGCAATGAA GTTTCAGCTTTAAGTGAGAAATATGGGCCCGACTTGACAAAAGAGTACATTAGAAATAGGCTTAGAACTTTGAAGAAACAATATCGTATTCTGAAGGAACTTCTTTCTCATGATGGGTTCAGTTGGGATGAGACAAGAAAGATTATCGTTGCAAATAACTCAGTATGGGATGATTATATCAAGGTCAATCTTGAGGCCAGAAGCTTTCGTGGTAGAATTTTTGAAAACTATGATCAACTTTGCATCTTCTTTGGATACTACAATATGGAGACTTTTGACTTCCACGTTGCTATGTATGATGGAAAGAATGGTTGTGAAGGGAATCCCTTGAGGTGGACAAGTGAAATGGACTGTTGTCTCAGTGGAGTCCTCGTGGAGCAAGTGATTCTTGGGAATAAAAATAGTAATGAATTCAAGACTGTTGCATATAATGCAGCTATATTGGCTATAAGAGAGAGGTTTTCTCTTCAATTGACAAAAGATCAAGTTAAGGATCGTTTTAAATCATGGAAAAGAGAGTACTTTGTGCTGAGGAACCTCTTAGACCAAGGTGACTTTGAATGGGATGATCAGCGAAAGATGTTGGTTGCAAAGGACTCAGTATGGGATGTGTCTGTTGAGAGAAACCCAGATGCTAGACTTCTTAGAGGGAGGGTCATTGAGAATTATGATGAATTGTGTATTATTATTGGGTATGACAATCCATCTGAAAGTTCTCTCAATCCTGCTAATGTTAATTTGGATTTAACTGCTAATAATGAAGCTATAAATGCTGGAGTTGTATGCTACAATCAAAGTAACAATGCAGCAGAAAAAGAAAATTTCATAACTTGGACTGAGGAGATGGATACCTGCTTATCGAAGCTGCTAGTTGAGCAAGTGGTTCTTGGAAACAGGATTGAGGAAACATTTAAGACTGCAGCTTACACGGCTGCTCTTACAGTTTTAAATGAGAGATTTGCGTTGGATTTGACTAAAGAAAACATTAGAAGCAGGTTAAACACATGGGAAAAGCAGTATGGAAGAGTGAAGTTACTCCTCTCCCATGATGGGTTTGAGTGGGATGAAAGACACAAGATGGTTGTTGCCAATGACTTTGATTGGACTGCATACATTAAGAAACACCCCGATGACCAGGACTTGCGAGCAAAATCGATCGACAATTACAATGAGCTGTGTATGATTTTTGGCAATGAA GTTTCAGCTTTAAGTGAGAAATATGGGCCCGACTTGACAAAAGAGTACATTAGAAATAGGCTTAGAACTTTGAAGAAACAATATCGTATTCTGAAGGAACTTCTTTCTCATGATGGGTTCAGTTGGGATGAGACAAGAAAGATTATCGTTGCAAATAACTCAGTATGGGATGATTATATCAAGGTCAATCTTGAGGCCAGAAGCTTTCGTGGTAGAATTTTTGAAAACTATGATCAACTTTGCATCTTCTTTGGATACTACAATATGGAGACTTTTGACTTCCACGTTGCTATGTATGATGGAAAGAATGGTTGTGAAGGGAATCCCTTGAGGTGGACAAGTGAAATGGACTGTTGTCTCAGTGGAGTCCTCGTGGAGCAAGTGATTCTTGGGAATAAAAATAGTAATGAATTCAAGACTGTTGCATATAATGCAGCTATATTGGCTATAAGAGAGAGGTTTTCTCTTCAATTGACAAAAGATCAAGTTAAGGATCGTTTTAAATCATGGAAAAGAGAGTACTTTGTGCTGAGGAACCTCTTAGACCAAGGTGACTTTGAATGGGATGATCAGCGAAAGATGTTGGTTGCAAAGGACTCAGTATGGGATGTGTCTGTTGAGAGAAACCCAGATGCTAGACTTCTTAGAGGGAGGGTCATTGAGAATTATGATGAATTGTGTATTATTATTGGGTATGACAATCCATCTGAAAGTTCTCTCAATCCTGCTAATGTTAATTTGGATTTAACTGCTAATAATGAAGCTATAAATGCTGGAGTTGTATGCTACAATCAAAGTAACAATGCAGCAGAAAAAGAAAATTTCATAACTTGGACTGAGGAGATGGATACCTGCTTATCGAAGCTGCTAGTTGAGCAAGTGGTTCTTGGAAACAGGATTGAGGAAACATTTAAGACTGCAGCTTACACGGCTGCTCTTACAGTTTTAAATGAGAGATTTGCGTTGGATTTGACTAAAGAAAACATTAGAAGCAGGTTAAACACATGGGAAAAGCAGTATGGAAGAGTGAAGTTACTCCTCTCCCATGATGGGTTTGAGTGGGATGAAAGACACAAGATGGTTGTTGCCAATGACTTTGATTGGACTGCATACATTAAGAAACACCCCGATGACCAGGACTTGCGAGCAAAATCGATCGACAATTACAATGAGCTGTGTATGATTTTTGGCAATGAA VSALSEKYGPDLTKEYIRNRLRTLKKQYRILKELLSHDGFSWDETRKIIVANNSVWDDYIKVNLEARSFRGRIFENYDQLCIFFGYYNMETFDFHVAMYDGKNGCEGNPLRWTSEMDCCLSGVLVEQVILGNKNSNEFKTVAYNAAILAIRERFSLQLTKDQVKDRFKSWKREYFVLRNLLDQGDFEWDDQRKMLVAKDSVWDVSVERNPDARLLRGRVIENYDELCIIIGYDNPSESSLNPANVNLDLTANNEAINAGVVCYNQSNNAAEKENFITWTEEMDTCLSKLLVEQVVLGNRIEETFKTAAYTAALTVLNERFALDLTKENIRSRLNTWEKQYGRVKLLLSHDGFEWDERHKMVVANDFDWTAYIKKHPDDQDLRAKSIDNYNELCMIFGNE Homology
BLAST of MS000541 vs. NCBI nr
Match: XP_030959168.1 (uncharacterized protein LOC115981123 [Quercus lobata]) HSP 1 Score: 493.0 bits (1268), Expect = 2.4e-135 Identity = 241/406 (59.36%), Postives = 311/406 (76.60%), Query Frame = 0
BLAST of MS000541 vs. NCBI nr
Match: XP_023877154.1 (uncharacterized protein LOC111989590 [Quercus suber]) HSP 1 Score: 487.3 bits (1253), Expect = 1.3e-133 Identity = 238/406 (58.62%), Postives = 311/406 (76.60%), Query Frame = 0
BLAST of MS000541 vs. NCBI nr
Match: KAF3973412.1 (hypothetical protein CMV_003146 [Castanea mollissima]) HSP 1 Score: 486.5 bits (1251), Expect = 2.2e-133 Identity = 240/406 (59.11%), Postives = 307/406 (75.62%), Query Frame = 0
BLAST of MS000541 vs. NCBI nr
Match: KAF7815604.1 (L10-interacting MYB domain-containing protein-like isoform X4 [Senna tora]) HSP 1 Score: 457.2 bits (1175), Expect = 1.4e-124 Identity = 219/410 (53.41%), Postives = 301/410 (73.41%), Query Frame = 0
BLAST of MS000541 vs. NCBI nr
Match: KAA8550002.1 (hypothetical protein F0562_001686 [Nyssa sinensis]) HSP 1 Score: 454.1 bits (1167), Expect = 1.2e-123 Identity = 228/423 (53.90%), Postives = 293/423 (69.27%), Query Frame = 0
BLAST of MS000541 vs. ExPASy Swiss-Prot
Match: O82368 (Uncharacterized protein At2g29880 OS=Arabidopsis thaliana OX=3702 GN=At2g29880 PE=2 SV=1) HSP 1 Score: 61.6 bits (148), Expect = 2.3e-08 Identity = 36/135 (26.67%), Postives = 68/135 (50.37%), Query Frame = 0
BLAST of MS000541 vs. ExPASy TrEMBL
Match: A0A7N2KMQ1 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1) HSP 1 Score: 493.0 bits (1268), Expect = 1.1e-135 Identity = 241/406 (59.36%), Postives = 311/406 (76.60%), Query Frame = 0
BLAST of MS000541 vs. ExPASy TrEMBL
Match: A0A2N9FX33 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19734 PE=4 SV=1) HSP 1 Score: 491.9 bits (1265), Expect = 2.5e-135 Identity = 239/403 (59.31%), Postives = 308/403 (76.43%), Query Frame = 0
BLAST of MS000541 vs. ExPASy TrEMBL
Match: A0A5J5C7S2 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_001686 PE=4 SV=1) HSP 1 Score: 454.1 bits (1167), Expect = 5.9e-124 Identity = 228/423 (53.90%), Postives = 293/423 (69.27%), Query Frame = 0
BLAST of MS000541 vs. ExPASy TrEMBL
Match: A0A371EED3 (L10-interacting MYB domain-containing protein (Fragment) OS=Mucuna pruriens OX=157652 GN=LIMYB PE=4 SV=1) HSP 1 Score: 449.1 bits (1154), Expect = 1.9e-122 Identity = 215/409 (52.57%), Postives = 295/409 (72.13%), Query Frame = 0
BLAST of MS000541 vs. ExPASy TrEMBL
Match: A0A5B7BRF2 (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_039932 PE=4 SV=1) HSP 1 Score: 446.8 bits (1148), Expect = 9.4e-122 Identity = 224/422 (53.08%), Postives = 293/422 (69.43%), Query Frame = 0
BLAST of MS000541 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 229.6 bits (584), Expect = 4.5e-60 Identity = 130/410 (31.71%), Postives = 209/410 (50.98%), Query Frame = 0
BLAST of MS000541 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). ) HSP 1 Score: 216.5 bits (550), Expect = 4.0e-56 Identity = 130/433 (30.02%), Postives = 209/433 (48.27%), Query Frame = 0
BLAST of MS000541 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). ) HSP 1 Score: 147.5 bits (371), Expect = 2.3e-35 Identity = 88/306 (28.76%), Postives = 156/306 (50.98%), Query Frame = 0
BLAST of MS000541 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). ) HSP 1 Score: 147.5 bits (371), Expect = 2.3e-35 Identity = 88/306 (28.76%), Postives = 156/306 (50.98%), Query Frame = 0
BLAST of MS000541 vs. TAIR 10
Match: AT4G02550.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 350 Blast hits to 284 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 13; Plants - 331; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). ) HSP 1 Score: 91.3 bits (225), Expect = 1.9e-18 Identity = 50/135 (37.04%), Postives = 72/135 (53.33%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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