MS000526 (gene) Bitter gourd (TR) v1

Overview


Name	MS000526
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	scaffold64: 3943 .. 5515 (+)
RNA-Seq Expression	MS000526
Synteny	MS000526

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACTCAGGCACTTGTATCATCTTCTTTAACCTCTTCAGTTGGTGCAGCCAGACACAGATTTGGGGCAAGACCCTCCTTTGGATCCTCTAGAAAATCAGCTTCCTTTGTTGTCAGAGCTGAAGCCACCCCTCCCGTTAAGGTACATTAATTACCCCTCGTTTCATCGTTGCTTAATATACTATCAGAGCGGGAGATTTCCAAGTTTCTATAATCATCTTTTGAGTATTAACGAAATTCGGTGATAGTTTGATATAGTATTAGAGCTACTCAATCTTTGGCTGAACTGTTGTAGTGTTGTTGCCTCTTTTTATTGGTTTGTCTTAATTAGTTGAATTATGTTTGGAGTGACCGGAAGGAAGAGGATTAGGGATATGAATACATATTAAATTTATTGTAATCTTAAGCTTTTGAATTTAGTAATGGTTTAACGTTTTCGCTATGATTGCAGCAAGGGGCAAATAGACAACTATGGTTCGCTTCAAAACAAAGTCTTTCTTACTTGGATGGAAGGTATATACATCTTCATTTTATTATTCTCAAAACTTCGGTACCGTTTTTGCTCTTTTTAATAGAAACATAGGTAACTTACCCGAAGTGAGAAAAAACAGGAACAATAATGTTAGGACAATGTTCTTGTTTATCGGTTTCTAGATCTTGCTTTTCGACAAAGAAAGACAAGCATGTTTAGTAATTATTTCGTATTCTTTCTTTCTTATTCCAGTTTCTTGTTCTATACCTCTTATAAGTNATTTAAAAAAAAAAAAAAAAGTGATACAATATAAACAAGAAACATAAAGTCAGAAATGAGAGTAGATCTTGTTGTTTTTAAAATTACAAGATACAAAGAAAACCCAATTACTAAAAACTTATATTTGTCTAGAACCATAAATAAGGAACAAAAAAAGATTTATAGATTCAAAATTGCAGTTCTTAAACTAACTATTTGATCTACCAGTCTCCCAGGCGACTACGGATTCGATCCATTGGGGCTATCGGACCCAGAAGGAACCGGAGGGTTCATCGAGCCAAAATGGTTAGCCTACGGCGAGGTGATCAATGGGCGGTACGCGATGTTAGGAGTAGTAGGAGCCATAGCCCCAGAGATCCTAGGATCCCTAGGGCTAATCCCCCCAGAAACAGCCCTCCCATGGTTCAAAACAGGAGTGATCCCTCCAGCAGGGACCTACAACTACTGGGCAGACCCCTACACTCTCTTTGTTTTCGAGATGGCCCTAATGGGCTTTGCAGAGCACAGAAGGTTCCAGGATTGGGCCAACCCAGGGTCCATGGGGAAGCAGTACTTCTTGGGCCTGGAGAAGTTCTTGGGTGGGTCAGGGGAGCCAGCATACCCTGGTGGGCCTCTGTTCAACCCATTAGGGTTTGGTAAAGATGAGAAGTCATTGAAGGATTTGAAGCTGAAGGAGGTGAAGAATGGGAGGCTGGCCATGTTGGCAATTTTGGGCTTCTTTGTACAGGGCCTTGTCACTGGTGTTGGGCCTTACCAAAACCTTTTGGACCACTTGTCTGACCCTGTCAACAACAATGTTTTGACAAGCCTTAAGTTCCAT

mRNA sequence

ATGGCTACTCAGGCACTTGTATCATCTTCTTTAACCTCTTCAGTTGGTGCAGCCAGACACAGATTTGGGGCAAGACCCTCCTTTGGATCCTCTAGAAAATCAGCTTCCTTTGTTGTCAGAGCTGAAGCCACCCCTCCCGTTAAGCAAGGGGCAAATAGACAACTATGGTTCGCTTCAAAACAAAGTCTTTCTTACTTGGATGGAAGTCTCCCAGGCGACTACGGATTCGATCCATTGGGGCTATCGGACCCAGAAGGAACCGGAGGGTTCATCGAGCCAAAATGGTTAGCCTACGGCGAGGTGATCAATGGGCGGTACGCGATGTTAGGAGTAGTAGGAGCCATAGCCCCAGAGATCCTAGGATCCCTAGGGCTAATCCCCCCAGAAACAGCCCTCCCATGGTTCAAAACAGGAGTGATCCCTCCAGCAGGGACCTACAACTACTGGGCAGACCCCTACACTCTCTTTGTTTTCGAGATGGCCCTAATGGGCTTTGCAGAGCACAGAAGGTTCCAGGATTGGGCCAACCCAGGGTCCATGGGGAAGCAGTACTTCTTGGGCCTGGAGAAGTTCTTGGGTGGGTCAGGGGAGCCAGCATACCCTGGTGGGCCTCTGTTCAACCCATTAGGGTTTGGTAAAGATGAGAAGTCATTGAAGGATTTGAAGCTGAAGGAGGTGAAGAATGGGAGGCTGGCCATGTTGGCAATTTTGGGCTTCTTTGTACAGGGCCTTGTCACTGGTGTTGGGCCTTACCAAAACCTTTTGGACCACTTGTCTGACCCTGTCAACAACAATGTTTTGACAAGCCTTAAGTTCCAT

Coding sequence (CDS)

ATGGCTACTCAGGCACTTGTATCATCTTCTTTAACCTCTTCAGTTGGTGCAGCCAGACACAGATTTGGGGCAAGACCCTCCTTTGGATCCTCTAGAAAATCAGCTTCCTTTGTTGTCAGAGCTGAAGCCACCCCTCCCGTTAAGCAAGGGGCAAATAGACAACTATGGTTCGCTTCAAAACAAAGTCTTTCTTACTTGGATGGAAGTCTCCCAGGCGACTACGGATTCGATCCATTGGGGCTATCGGACCCAGAAGGAACCGGAGGGTTCATCGAGCCAAAATGGTTAGCCTACGGCGAGGTGATCAATGGGCGGTACGCGATGTTAGGAGTAGTAGGAGCCATAGCCCCAGAGATCCTAGGATCCCTAGGGCTAATCCCCCCAGAAACAGCCCTCCCATGGTTCAAAACAGGAGTGATCCCTCCAGCAGGGACCTACAACTACTGGGCAGACCCCTACACTCTCTTTGTTTTCGAGATGGCCCTAATGGGCTTTGCAGAGCACAGAAGGTTCCAGGATTGGGCCAACCCAGGGTCCATGGGGAAGCAGTACTTCTTGGGCCTGGAGAAGTTCTTGGGTGGGTCAGGGGAGCCAGCATACCCTGGTGGGCCTCTGTTCAACCCATTAGGGTTTGGTAAAGATGAGAAGTCATTGAAGGATTTGAAGCTGAAGGAGGTGAAGAATGGGAGGCTGGCCATGTTGGCAATTTTGGGCTTCTTTGTACAGGGCCTTGTCACTGGTGTTGGGCCTTACCAAAACCTTTTGGACCACTTGTCTGACCCTGTCAACAACAATGTTTTGACAAGCCTTAAGTTCCAT

Protein sequence

MATQALVSSSLTSSVGAARHRFGARPSFGSSRKSASFVVRAEATPPVKQGANRQLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGVVGAIAPEILGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWANPGSMGKQYFLGLEKFLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGFFVQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH

Homology

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BLAST of MS000526 vs. NCBI nr
Match: XP_022153224.1 (photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic [Momordica charantia])

HSP 1 Score: 557.8 bits (1436), Expect = 5.3e-155
Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 0


Query: 1   MATQALVSSSLTSSVGAARHRFGARPSFGSSRKSASFVVRAEATPPVKQGANRQLWFASK 60
           MATQALVSSSLTSSVGAARHRFGARPSFGSSRKSASFVVRAEATPPVKQGANRQLWFASK
Sbjct: 1   MATQALVSSSLTSSVGAARHRFGARPSFGSSRKSASFVVRAEATPPVKQGANRQLWFASK 60

Query: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGVVGAIAPEIL 120
           QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGVVGAIAPEIL
Sbjct: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGVVGAIAPEIL 120

Query: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWANPGSM 180
           GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWANPGSM
Sbjct: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWANPGSM 180

Query: 181 GKQYFLGLEKFLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGFF 240
           GKQYFLGLEKFLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGFF
Sbjct: 181 GKQYFLGLEKFLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGFF 240

Query: 241 VQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 274
           VQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH
Sbjct: 241 VQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 273

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BLAST of MS000526 vs. NCBI nr
Match: XP_038879830.1 (photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic [Benincasa hispida])

HSP 1 Score: 536.2 bits (1380), Expect = 1.7e-148
Identity = 260/273 (95.24%), Postives = 267/273 (97.80%), Query Frame = 0


Query: 1   MATQALVSSSLTSSVGAARHRFGARPSFGSSRKSASFVVRAEATPPVKQGANRQLWFASK 60
           MATQALVSSSLTSSVGAAR R GA+PSFGSSRK+ASFVVRAEATPPVKQGA+RQLWFASK
Sbjct: 1   MATQALVSSSLTSSVGAARQRLGAKPSFGSSRKAASFVVRAEATPPVKQGADRQLWFASK 60

Query: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGVVGAIAPEIL 120
           QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGEVINGR+AMLG  GAIAPEI 
Sbjct: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIF 120

Query: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWANPGSM 180
           GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWA PGSM
Sbjct: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWAKPGSM 180

Query: 181 GKQYFLGLEKFLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGFF 240
           GKQYFLGLEKFLGGSG+PAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILG+F
Sbjct: 181 GKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYF 240

Query: 241 VQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 274
           VQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH
Sbjct: 241 VQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 273

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BLAST of MS000526 vs. NCBI nr
Match: XP_004139075.1 (chlorophyll a-b binding protein 8, chloroplastic [Cucumis sativus] >KGN66578.1 hypothetical protein Csa_006962 [Cucumis sativus])

HSP 1 Score: 533.9 bits (1374), Expect = 8.2e-148
Identity = 257/273 (94.14%), Postives = 267/273 (97.80%), Query Frame = 0


Query: 1   MATQALVSSSLTSSVGAARHRFGARPSFGSSRKSASFVVRAEATPPVKQGANRQLWFASK 60
           MATQALVSSSLTSSVGAAR R GARPSFGSSRKSASFVVRAEATPPVKQGA+RQLWFASK
Sbjct: 1   MATQALVSSSLTSSVGAARQRLGARPSFGSSRKSASFVVRAEATPPVKQGADRQLWFASK 60

Query: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGVVGAIAPEIL 120
           QSLSYLDGSLPGD+GFDPLGLSDPEGTGGFIEP+WLAYGEVINGR+AMLG  GAIAPEI 
Sbjct: 61  QSLSYLDGSLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIF 120

Query: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWANPGSM 180
           GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWA PGSM
Sbjct: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWAKPGSM 180

Query: 181 GKQYFLGLEKFLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGFF 240
           GKQYFLGLEKFLGGSG+PAYPGGPLFNPLGFGKDEKS+K+LKLKE+KNGRLAMLAILG+F
Sbjct: 181 GKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYF 240

Query: 241 VQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 274
           +QGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH
Sbjct: 241 IQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 273

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BLAST of MS000526 vs. NCBI nr
Match: XP_008450298.1 (PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Cucumis melo] >TYK28122.1 chlorophyll a-b binding protein 8 [Cucumis melo var. makuwa])

HSP 1 Score: 527.3 bits (1357), Expect = 7.7e-146
Identity = 253/273 (92.67%), Postives = 265/273 (97.07%), Query Frame = 0


Query: 1   MATQALVSSSLTSSVGAARHRFGARPSFGSSRKSASFVVRAEATPPVKQGANRQLWFASK 60
           MATQALVSSSLTSSVGAAR R GA+PSFGSSRKSASFVVRA ATPPVKQGA+RQLWFASK
Sbjct: 1   MATQALVSSSLTSSVGAARQRLGAKPSFGSSRKSASFVVRAGATPPVKQGADRQLWFASK 60

Query: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGVVGAIAPEIL 120
           QSL+YLDGSLPGD+GFDPLGLSDPEGTGGFIEPKWLAYGEVINGR+AMLG  GAIAPEI 
Sbjct: 61  QSLTYLDGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIF 120

Query: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWANPGSM 180
           GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFV EMALMGFAEHRRFQDWA PGSM
Sbjct: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSM 180

Query: 181 GKQYFLGLEKFLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGFF 240
           GKQYFLGLEKFLGGSG+PAYPGGPLFNPLGFGKDEKS+K+LKLKE+KNGRLAMLAILG+F
Sbjct: 181 GKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYF 240

Query: 241 VQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 274
           +QGLVTGVGPYQNLLDHLSDPVNNN+LTSLKFH
Sbjct: 241 IQGLVTGVGPYQNLLDHLSDPVNNNILTSLKFH 273

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BLAST of MS000526 vs. NCBI nr
Match: XP_022960627.1 (photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 526.6 bits (1355), Expect = 1.3e-145
Identity = 254/273 (93.04%), Postives = 263/273 (96.34%), Query Frame = 0


Query: 1   MATQALVSSSLTSSVGAARHRFGARPSFGSSRKSASFVVRAEATPPVKQGANRQLWFASK 60
           MATQALVSSSLTSSVGAAR RFG +P  GSS K ASFVVRAEATPPVKQGANR LWFASK
Sbjct: 1   MATQALVSSSLTSSVGAARQRFGPKPCLGSSTKQASFVVRAEATPPVKQGANRALWFASK 60

Query: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGVVGAIAPEIL 120
           QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGEVINGR+AMLGVVGAIAPEIL
Sbjct: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGVVGAIAPEIL 120

Query: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWANPGSM 180
           GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFV EMALMGFAEHRRFQDWA PGSM
Sbjct: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSM 180

Query: 181 GKQYFLGLEKFLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGFF 240
           GKQYFLGLE+FLGGSG+PAYPGGPLFNPLGFGKDEKS+KDLKLKEVKNGRLAMLAILG F
Sbjct: 181 GKQYFLGLERFLGGSGDPAYPGGPLFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGLF 240

Query: 241 VQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 274
           +QGLVTGVGPYQNLLDHLSDP+NNN+LTSLKFH
Sbjct: 241 IQGLVTGVGPYQNLLDHLSDPINNNLLTSLKFH 273

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BLAST of MS000526 vs. ExPASy Swiss-Prot
Match: Q9SY97 (Photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA3 PE=1 SV=1)

HSP 1 Score: 481.5 bits (1238), Expect = 6.4e-135
Identity = 233/273 (85.35%), Postives = 247/273 (90.48%), Query Frame = 0


Query: 1   MATQALVSSSLTSSVGAARHRFGARPSFGSSRKSASFVVRAEATPPVKQGANRQLWFASK 60
           MA QALVSSSLTSSV  AR  FG++P   +S+K +SFVV+A ATPPVKQGANR LWFAS 
Sbjct: 1   MAAQALVSSSLTSSVQTARQIFGSKPVASASQKKSSFVVKAAATPPVKQGANRPLWFASS 60

Query: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGVVGAIAPEIL 120
           QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGE+INGR+AMLG  GAIAPEIL
Sbjct: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEIL 120

Query: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWANPGSM 180
           G  GLIP ETALPWF+TGVIPPAGTY YWAD YTLFV EMALMGFAEHRR QDW NPGSM
Sbjct: 121 GKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSM 180

Query: 181 GKQYFLGLEKFLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGFF 240
           GKQYFLGLEK L GSG PAYPGGP FNPLGFGKDEKSLK+LKLKEVKNGRLAMLAILG+F
Sbjct: 181 GKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYF 240

Query: 241 VQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 274
           +QGLVTGVGPYQNLLDHL+DPVNNNVLTSLKFH
Sbjct: 241 IQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273

[Close]

BLAST of MS000526 vs. ExPASy Swiss-Prot
Match: P27522 (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB8 PE=3 SV=1)

HSP 1 Score: 472.6 bits (1215), Expect = 3.0e-132
Identity = 233/274 (85.04%), Postives = 250/274 (91.24%), Query Frame = 0


Query: 1   MATQALV-SSSLTSSVGAARHRFGARPSFGSSRKSASFVVRAEATPPVKQGANRQLWFAS 60
           MATQAL+ SSS+++S  AAR   G+R S   +RK ASFVVRA +TPPVKQGANRQLWFAS
Sbjct: 1   MATQALISSSSISTSAEAARQIIGSRISQSVTRK-ASFVVRAASTPPVKQGANRQLWFAS 60

Query: 61  KQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGVVGAIAPEI 120
           KQSLSYLDG LPGD+GFDPLGLSDPEGTGGFIEPKWLAYGEVINGR+AMLG  GAIAPEI
Sbjct: 61  KQSLSYLDGRLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEI 120

Query: 121 LGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWANPGS 180
           LG  GLIP ETAL WF+TGVIPPAGTYNYWAD YTLFV EMALMGFAEHRRFQDWA PGS
Sbjct: 121 LGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGS 180

Query: 181 MGKQYFLGLEKFLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGF 240
           MGKQYFLGLEK LGGSG+PAYPGGPLFNPLGFGKDEKS+K+LKLKE+KNGRLAMLAILG+
Sbjct: 181 MGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240

Query: 241 FVQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 274
           F+Q LVTGVGPYQNLLDHL+DPVNNNVLTSLKFH
Sbjct: 241 FIQALVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273

[Close]

BLAST of MS000526 vs. ExPASy Swiss-Prot
Match: Q32904 (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum OX=3888 GN=lhca3 PE=1 SV=1)

HSP 1 Score: 457.2 bits (1175), Expect = 1.3e-127
Identity = 232/278 (83.45%), Postives = 244/278 (87.77%), Query Frame = 0


Query: 1   MATQALV-SSSLTSSVGAARHRFGAR---PSFGSSRKSASFVVRAEATPPVKQ-GANRQL 60
           MATQALV SSSLT +  A R  F AR    S G SRK    +VRA ATPPVKQ G +R L
Sbjct: 1   MATQALVSSSSLTFAAEAVRQSFRARSLPSSVGCSRKG---LVRAAATPPVKQGGVDRPL 60

Query: 61  WFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGVVGAI 120
           WFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGEVINGR+AMLG VGAI
Sbjct: 61  WFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAI 120

Query: 121 APEILGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWA 180
           APE LG +GLIP ETAL WF+TGVIPPAGTYNYWAD YTLFV EMALMGFAEHRRFQDWA
Sbjct: 121 APEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWA 180

Query: 181 NPGSMGKQYFLGLEKFLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLA 240
            PGSMGKQYFLGLEK  GGSG PAYPGGP FNPLGFGKDEKSLK+LKLKEVKNGRLAMLA
Sbjct: 181 KPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLA 240

Query: 241 ILGFFVQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 274
           ILG+F+QGLVTGVGPYQNLLDH++DPVNNNVLTSLKFH
Sbjct: 241 ILGYFIQGLVTGVGPYQNLLDHVADPVNNNVLTSLKFH 275

[Close]

BLAST of MS000526 vs. ExPASy Swiss-Prot
Match: Q9C639 (Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA5 PE=1 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.2e-45
Identity = 112/262 (42.75%), Postives = 150/262 (57.25%), Query Frame = 0


Query: 21  RFGARPSFGSSRKSASFVV--RAEATPPVKQGAN------RQLWFASKQSLSYLDGSLPG 80
           R G    F   R+ AS V+  R  +      G N      R  W        YLDG+L G
Sbjct: 6   RGGITGGFLHHRRDASSVITRRISSVKAAGGGINPTVAVERATWLPGLNPPPYLDGNLAG 65

Query: 81  DYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGVVGAIAPEILGSLGLIPPETA 140
           DYGFDPLGL  DPE        KW    E+++ R+AMLGV G +  ++L + G+      
Sbjct: 66  DYGFDPLGLGEDPESL------KWYVQAELVHSRFAMLGVAGILFTDLLRTTGI----RN 125

Query: 141 LP-WFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWANPGSMGKQ--YFLGL 200
           LP W++ G +     +++ A   TL V +  LMGFAE +R+ D+ +PGS  K+  +F GL
Sbjct: 126 LPVWYEAGAV----KFDF-ASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGL 185

Query: 201 EKFLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGFFVQGLVTGV 260
           E  L G  EP YPGGPL NPLG  KD ++  D KLKE+KNGRLAM+A+LGFFVQ  VT  
Sbjct: 186 EAALEGL-EPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHT 245

Query: 261 GPYQNLLDHLSDPVNNNVLTSL 271
           GP  NL++HLS+P +  ++ +L
Sbjct: 246 GPIDNLVEHLSNPWHKTIIQTL 251

[Close]

BLAST of MS000526 vs. ExPASy Swiss-Prot
Match: P27521 (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA4 PE=1 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 4.1e-41
Identity = 113/248 (45.56%), Postives = 139/248 (56.05%), Query Frame = 0


Query: 27  SFGSSRKSASFVVRAEATPPVKQGANRQLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPE 86
           S GSS K++SF V A      K+G     W     S  YL GSL GD GFDPLGL+ DPE
Sbjct: 38  SIGSSAKTSSFKVEA------KKGE----WLPGLASPDYLTGSLAGDNGFDPLGLAEDPE 97

Query: 87  GTGGFIEPKWLAYGEVINGRYAMLGVVGAIAPEILGSLGLI-PPETALPWFKTGVIPPAG 146
                   KW    E++NGR+AMLGV G + PE+   +G+I  PE    W+       AG
Sbjct: 98  NL------KWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPE----WY------DAG 157

Query: 147 TYNYWADPYTLFVFEMALMGFAEHRRFQDWANPGSMG-----KQYFLGLEKFLGGSGEPA 206
              Y+A   TLFV E  L  + E RR+QD  NPGS+      KQY L         GE  
Sbjct: 158 KEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSL-------PKGEVG 217

Query: 207 YPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGFFVQGLVTGVGPYQNLLDHLS 266
           YPGG +FNPL F   +++    K KE+ NGRLAMLA LGF VQ  VTG GP++NLL HLS
Sbjct: 218 YPGG-IFNPLNFAPTQEA----KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLS 247

Query: 267 DPVNNNVL 268
           DP +N ++
Sbjct: 278 DPWHNTIV 247

[Close]

BLAST of MS000526 vs. ExPASy TrEMBL
Match: A0A6J1DIF2 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111020769 PE=3 SV=1)

HSP 1 Score: 557.8 bits (1436), Expect = 2.6e-155
Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 0


Query: 1   MATQALVSSSLTSSVGAARHRFGARPSFGSSRKSASFVVRAEATPPVKQGANRQLWFASK 60
           MATQALVSSSLTSSVGAARHRFGARPSFGSSRKSASFVVRAEATPPVKQGANRQLWFASK
Sbjct: 1   MATQALVSSSLTSSVGAARHRFGARPSFGSSRKSASFVVRAEATPPVKQGANRQLWFASK 60

Query: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGVVGAIAPEIL 120
           QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGVVGAIAPEIL
Sbjct: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGVVGAIAPEIL 120

Query: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWANPGSM 180
           GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWANPGSM
Sbjct: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWANPGSM 180

Query: 181 GKQYFLGLEKFLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGFF 240
           GKQYFLGLEKFLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGFF
Sbjct: 181 GKQYFLGLEKFLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGFF 240

Query: 241 VQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 274
           VQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH
Sbjct: 241 VQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 273

[Close]

BLAST of MS000526 vs. ExPASy TrEMBL
Match: A0A0A0LXV0 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_1G630330 PE=3 SV=1)

HSP 1 Score: 533.9 bits (1374), Expect = 4.0e-148
Identity = 257/273 (94.14%), Postives = 267/273 (97.80%), Query Frame = 0


Query: 1   MATQALVSSSLTSSVGAARHRFGARPSFGSSRKSASFVVRAEATPPVKQGANRQLWFASK 60
           MATQALVSSSLTSSVGAAR R GARPSFGSSRKSASFVVRAEATPPVKQGA+RQLWFASK
Sbjct: 1   MATQALVSSSLTSSVGAARQRLGARPSFGSSRKSASFVVRAEATPPVKQGADRQLWFASK 60

Query: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGVVGAIAPEIL 120
           QSLSYLDGSLPGD+GFDPLGLSDPEGTGGFIEP+WLAYGEVINGR+AMLG  GAIAPEI 
Sbjct: 61  QSLSYLDGSLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIF 120

Query: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWANPGSM 180
           GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWA PGSM
Sbjct: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWAKPGSM 180

Query: 181 GKQYFLGLEKFLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGFF 240
           GKQYFLGLEKFLGGSG+PAYPGGPLFNPLGFGKDEKS+K+LKLKE+KNGRLAMLAILG+F
Sbjct: 181 GKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYF 240

Query: 241 VQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 274
           +QGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH
Sbjct: 241 IQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 273

[Close]

BLAST of MS000526 vs. ExPASy TrEMBL
Match: A0A5D3DX73 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00280 PE=3 SV=1)

HSP 1 Score: 527.3 bits (1357), Expect = 3.7e-146
Identity = 253/273 (92.67%), Postives = 265/273 (97.07%), Query Frame = 0


Query: 1   MATQALVSSSLTSSVGAARHRFGARPSFGSSRKSASFVVRAEATPPVKQGANRQLWFASK 60
           MATQALVSSSLTSSVGAAR R GA+PSFGSSRKSASFVVRA ATPPVKQGA+RQLWFASK
Sbjct: 1   MATQALVSSSLTSSVGAARQRLGAKPSFGSSRKSASFVVRAGATPPVKQGADRQLWFASK 60

Query: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGVVGAIAPEIL 120
           QSL+YLDGSLPGD+GFDPLGLSDPEGTGGFIEPKWLAYGEVINGR+AMLG  GAIAPEI 
Sbjct: 61  QSLTYLDGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIF 120

Query: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWANPGSM 180
           GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFV EMALMGFAEHRRFQDWA PGSM
Sbjct: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSM 180

Query: 181 GKQYFLGLEKFLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGFF 240
           GKQYFLGLEKFLGGSG+PAYPGGPLFNPLGFGKDEKS+K+LKLKE+KNGRLAMLAILG+F
Sbjct: 181 GKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYF 240

Query: 241 VQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 274
           +QGLVTGVGPYQNLLDHLSDPVNNN+LTSLKFH
Sbjct: 241 IQGLVTGVGPYQNLLDHLSDPVNNNILTSLKFH 273

[Close]

BLAST of MS000526 vs. ExPASy TrEMBL
Match: A0A1S3BPK7 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491949 PE=3 SV=1)

HSP 1 Score: 527.3 bits (1357), Expect = 3.7e-146
Identity = 253/273 (92.67%), Postives = 265/273 (97.07%), Query Frame = 0


Query: 1   MATQALVSSSLTSSVGAARHRFGARPSFGSSRKSASFVVRAEATPPVKQGANRQLWFASK 60
           MATQALVSSSLTSSVGAAR R GA+PSFGSSRKSASFVVRA ATPPVKQGA+RQLWFASK
Sbjct: 1   MATQALVSSSLTSSVGAARQRLGAKPSFGSSRKSASFVVRAGATPPVKQGADRQLWFASK 60

Query: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGVVGAIAPEIL 120
           QSL+YLDGSLPGD+GFDPLGLSDPEGTGGFIEPKWLAYGEVINGR+AMLG  GAIAPEI 
Sbjct: 61  QSLTYLDGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIF 120

Query: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWANPGSM 180
           GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFV EMALMGFAEHRRFQDWA PGSM
Sbjct: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSM 180

Query: 181 GKQYFLGLEKFLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGFF 240
           GKQYFLGLEKFLGGSG+PAYPGGPLFNPLGFGKDEKS+K+LKLKE+KNGRLAMLAILG+F
Sbjct: 181 GKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYF 240

Query: 241 VQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 274
           +QGLVTGVGPYQNLLDHLSDPVNNN+LTSLKFH
Sbjct: 241 IQGLVTGVGPYQNLLDHLSDPVNNNILTSLKFH 273

[Close]

BLAST of MS000526 vs. ExPASy TrEMBL
Match: A0A6J1H7Y6 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111461357 PE=3 SV=1)

HSP 1 Score: 526.6 bits (1355), Expect = 6.4e-146
Identity = 254/273 (93.04%), Postives = 263/273 (96.34%), Query Frame = 0


Query: 1   MATQALVSSSLTSSVGAARHRFGARPSFGSSRKSASFVVRAEATPPVKQGANRQLWFASK 60
           MATQALVSSSLTSSVGAAR RFG +P  GSS K ASFVVRAEATPPVKQGANR LWFASK
Sbjct: 1   MATQALVSSSLTSSVGAARQRFGPKPCLGSSTKQASFVVRAEATPPVKQGANRALWFASK 60

Query: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGVVGAIAPEIL 120
           QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGEVINGR+AMLGVVGAIAPEIL
Sbjct: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGVVGAIAPEIL 120

Query: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWANPGSM 180
           GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFV EMALMGFAEHRRFQDWA PGSM
Sbjct: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSM 180

Query: 181 GKQYFLGLEKFLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGFF 240
           GKQYFLGLE+FLGGSG+PAYPGGPLFNPLGFGKDEKS+KDLKLKEVKNGRLAMLAILG F
Sbjct: 181 GKQYFLGLERFLGGSGDPAYPGGPLFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGLF 240

Query: 241 VQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 274
           +QGLVTGVGPYQNLLDHLSDP+NNN+LTSLKFH
Sbjct: 241 IQGLVTGVGPYQNLLDHLSDPINNNLLTSLKFH 273

[Close]

BLAST of MS000526 vs. TAIR 10
Match: AT1G61520.1 (photosystem I light harvesting complex gene 3 )

HSP 1 Score: 481.5 bits (1238), Expect = 4.5e-136
Identity = 233/273 (85.35%), Postives = 247/273 (90.48%), Query Frame = 0


Query: 1   MATQALVSSSLTSSVGAARHRFGARPSFGSSRKSASFVVRAEATPPVKQGANRQLWFASK 60
           MA QALVSSSLTSSV  AR  FG++P   +S+K +SFVV+A ATPPVKQGANR LWFAS 
Sbjct: 1   MAAQALVSSSLTSSVQTARQIFGSKPVASASQKKSSFVVKAAATPPVKQGANRPLWFASS 60

Query: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGVVGAIAPEIL 120
           QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGE+INGR+AMLG  GAIAPEIL
Sbjct: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEIL 120

Query: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWANPGSM 180
           G  GLIP ETALPWF+TGVIPPAGTY YWAD YTLFV EMALMGFAEHRR QDW NPGSM
Sbjct: 121 GKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSM 180

Query: 181 GKQYFLGLEKFLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGFF 240
           GKQYFLGLEK L GSG PAYPGGP FNPLGFGKDEKSLK+LKLKEVKNGRLAMLAILG+F
Sbjct: 181 GKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYF 240

Query: 241 VQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 274
           +QGLVTGVGPYQNLLDHL+DPVNNNVLTSLKFH
Sbjct: 241 IQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273

[Close]

BLAST of MS000526 vs. TAIR 10
Match: AT1G61520.3 (photosystem I light harvesting complex gene 3 )

HSP 1 Score: 481.5 bits (1238), Expect = 4.5e-136
Identity = 233/273 (85.35%), Postives = 247/273 (90.48%), Query Frame = 0


Query: 1   MATQALVSSSLTSSVGAARHRFGARPSFGSSRKSASFVVRAEATPPVKQGANRQLWFASK 60
           MA QALVSSSLTSSV  AR  FG++P   +S+K +SFVV+A ATPPVKQGANR LWFAS 
Sbjct: 1   MAAQALVSSSLTSSVQTARQIFGSKPVASASQKKSSFVVKAAATPPVKQGANRPLWFASS 60

Query: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGVVGAIAPEIL 120
           QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGE+INGR+AMLG  GAIAPEIL
Sbjct: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEIL 120

Query: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWANPGSM 180
           G  GLIP ETALPWF+TGVIPPAGTY YWAD YTLFV EMALMGFAEHRR QDW NPGSM
Sbjct: 121 GKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSM 180

Query: 181 GKQYFLGLEKFLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGFF 240
           GKQYFLGLEK L GSG PAYPGGP FNPLGFGKDEKSLK+LKLKEVKNGRLAMLAILG+F
Sbjct: 181 GKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYF 240

Query: 241 VQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 274
           +QGLVTGVGPYQNLLDHL+DPVNNNVLTSLKFH
Sbjct: 241 IQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273

[Close]

BLAST of MS000526 vs. TAIR 10
Match: AT1G61520.2 (photosystem I light harvesting complex gene 3 )

HSP 1 Score: 392.5 bits (1007), Expect = 2.8e-109
Identity = 186/220 (84.55%), Postives = 196/220 (89.09%), Query Frame = 0


Query: 54  QLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGVVG 113
           ++W  S  S      SLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGE+INGR+AMLG  G
Sbjct: 4   KIWRCSDSSC-----SLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAG 63

Query: 114 AIAPEILGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQD 173
           AIAPEILG  GLIP ETALPWF+TGVIPPAGTY YWAD YTLFV EMALMGFAEHRR QD
Sbjct: 64  AIAPEILGKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQD 123

Query: 174 WANPGSMGKQYFLGLEKFLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAM 233
           W NPGSMGKQYFLGLEK L GSG PAYPGGP FNPLGFGKDEKSLK+LKLKEVKNGRLAM
Sbjct: 124 WYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAM 183

Query: 234 LAILGFFVQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 274
           LAILG+F+QGLVTGVGPYQNLLDHL+DPVNNNVLTSLKFH
Sbjct: 184 LAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 218

[Close]

BLAST of MS000526 vs. TAIR 10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 184.9 bits (468), Expect = 8.8e-47
Identity = 112/262 (42.75%), Postives = 150/262 (57.25%), Query Frame = 0


Query: 21  RFGARPSFGSSRKSASFVV--RAEATPPVKQGAN------RQLWFASKQSLSYLDGSLPG 80
           R G    F   R+ AS V+  R  +      G N      R  W        YLDG+L G
Sbjct: 6   RGGITGGFLHHRRDASSVITRRISSVKAAGGGINPTVAVERATWLPGLNPPPYLDGNLAG 65

Query: 81  DYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGVVGAIAPEILGSLGLIPPETA 140
           DYGFDPLGL  DPE        KW    E+++ R+AMLGV G +  ++L + G+      
Sbjct: 66  DYGFDPLGLGEDPESL------KWYVQAELVHSRFAMLGVAGILFTDLLRTTGI----RN 125

Query: 141 LP-WFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWANPGSMGKQ--YFLGL 200
           LP W++ G +     +++ A   TL V +  LMGFAE +R+ D+ +PGS  K+  +F GL
Sbjct: 126 LPVWYEAGAV----KFDF-ASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGL 185

Query: 201 EKFLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGFFVQGLVTGV 260
           E  L G  EP YPGGPL NPLG  KD ++  D KLKE+KNGRLAM+A+LGFFVQ  VT  
Sbjct: 186 EAALEGL-EPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHT 245

Query: 261 GPYQNLLDHLSDPVNNNVLTSL 271
           GP  NL++HLS+P +  ++ +L
Sbjct: 246 GPIDNLVEHLSNPWHKTIIQTL 251

[Close]

BLAST of MS000526 vs. TAIR 10
Match: AT1G45474.2 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 184.9 bits (468), Expect = 8.8e-47
Identity = 112/262 (42.75%), Postives = 150/262 (57.25%), Query Frame = 0


Query: 21  RFGARPSFGSSRKSASFVV--RAEATPPVKQGAN------RQLWFASKQSLSYLDGSLPG 80
           R G    F   R+ AS V+  R  +      G N      R  W        YLDG+L G
Sbjct: 6   RGGITGGFLHHRRDASSVITRRISSVKAAGGGINPTVAVERATWLPGLNPPPYLDGNLAG 65

Query: 81  DYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGVVGAIAPEILGSLGLIPPETA 140
           DYGFDPLGL  DPE        KW    E+++ R+AMLGV G +  ++L + G+      
Sbjct: 66  DYGFDPLGLGEDPESL------KWYVQAELVHSRFAMLGVAGILFTDLLRTTGI----RN 125

Query: 141 LP-WFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWANPGSMGKQ--YFLGL 200
           LP W++ G +     +++ A   TL V +  LMGFAE +R+ D+ +PGS  K+  +F GL
Sbjct: 126 LPVWYEAGAV----KFDF-ASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGL 185

Query: 201 EKFLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGFFVQGLVTGV 260
           E  L G  EP YPGGPL NPLG  KD ++  D KLKE+KNGRLAM+A+LGFFVQ  VT  
Sbjct: 186 EAALEGL-EPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHT 245

Query: 261 GPYQNLLDHLSDPVNNNVLTSL 271
           GP  NL++HLS+P +  ++ +L
Sbjct: 246 GPIDNLVEHLSNPWHKTIIQTL 251

The following BLAST results are available for this feature:

BLAST of MS000526 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153224.1	5.3e-155	100.00	photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic [Momordica char...	[more]
XP_038879830.1	1.7e-148	95.24	photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic [Benincasa hisp...	[more]
XP_004139075.1	8.2e-148	94.14	chlorophyll a-b binding protein 8, chloroplastic [Cucumis sativus] >KGN66578.1 h...	[more]
XP_008450298.1	7.7e-146	92.67	PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Cucumis melo] >TYK2...	[more]
XP_022960627.1	1.3e-145	93.04	photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic-like [Cucurbita...	[more]

BLAST of MS000526 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SY97	6.4e-135	85.35	Photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic OS=Arabidopsis ...	[more]
P27522	3.0e-132	85.04	Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum OX=4081...	[more]
Q32904	1.3e-127	83.45	Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum OX=3888 GN=lhc...	[more]
Q9C639	1.2e-45	42.75	Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis th...	[more]
P27521	4.1e-41	45.56	Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of MS000526 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DIF2	2.6e-155	100.00	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]
A0A0A0LXV0	4.0e-148	94.14	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A5D3DX73	3.7e-146	92.67	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BPK7	3.7e-146	92.67	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1H7Y6	6.4e-146	93.04	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]

BLAST of MS000526 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G61520.1	4.5e-136	85.35	photosystem I light harvesting complex gene 3	[more]
AT1G61520.3	4.5e-136	85.35	photosystem I light harvesting complex gene 3	[more]
AT1G61520.2	2.8e-109	84.55	photosystem I light harvesting complex gene 3	[more]
AT1G45474.1	8.8e-47	42.75	photosystem I light harvesting complex gene 5	[more]
AT1G45474.2	8.8e-47	42.75	photosystem I light harvesting complex gene 5	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 64..242 e-value: 1.8E-47 score: 161.9
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 54..272 e-value: 2.9E-65 score: 221.9
None	No IPR available	PANTHER	PTHR21649:SF120	CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC	coord: 1..272
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 52..269
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..272

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000526.1	MS000526.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0016020	membrane