MS000506 (gene) Bitter gourd (TR) v1

Overview
NameMS000506
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionEKC/KEOPS complex, subunit Pcc1
Locationscaffold44: 2143024 .. 2143573 (-)
RNA-Seq ExpressionMS000506
SyntenyMS000506
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAGCTATCTTATCATCTCTTTTAGTTTCAACTCGAATCTGGTTTACTCTCTGCAGTGACTTTGAAGTCGATTATGAGTCTGAGAAGAAAGCATCGATTGTCTATAATGCTCTAGCTGTCGATAAAGAGGTGCTTCTCAATAACGTCAATCTCCATAATGTGATCCAAATAGTTGACTTATTTGAGTTGTTTCTTATTTGATTTTTGTGCTAAATACAGTTGCAGCCAGACAAGGTGAAAAGGGAGATGGCAGTTTCTGATGGAAAACTTTCAGTGTGATCCTCTTTTGCTCTTTGCGTTCCTAGTTGAGAATGTACTTTTGACAGAATAGATGCCAAAATAGCTTATTACAATATTTTGTGAAACCTAATATCGCATTCATAATTCTCTGCAATCATGTTTTGGAATTCTCATGGCTGCCTGATTTTTCTCGTGTAGACACTTTGAAGCAGTGGAAGCAAGATTTCTGCGTGCATCATTCAGTGCTTTTGTAGATGTGCTTACTCTTGCCACAAAAACAATCGAGGATTTCGGACAAGGATTGGACTTG

mRNA sequence

TTAGCTATCTTATCATCTCTTTTAGTTTCAACTCGAATCTGGTTTACTCTCTGCAGTGACTTTGAAGTCGATTATGAGTCTGAGAAGAAAGCATCGATTGTCTATAATGCTCTAGCTGTCGATAAAGAGTTGCAGCCAGACAAGGTGAAAAGGGAGATGGCAGTTTCTGATGGAAAACTTTCAGTACACTTTGAAGCAGTGGAAGCAAGATTTCTGCGTGCATCATTCAGTGCTTTTGTAGATGTGCTTACTCTTGCCACAAAAACAATCGAGGATTTCGGACAAGGATTGGACTTG

Coding sequence (CDS)

TTAGCTATCTTATCATCTCTTTTAGTTTCAACTCGAATCTGGTTTACTCTCTGCAGTGACTTTGAAGTCGATTATGAGTCTGAGAAGAAAGCATCGATTGTCTATAATGCTCTAGCTGTCGATAAAGAGTTGCAGCCAGACAAGGTGAAAAGGGAGATGGCAGTTTCTGATGGAAAACTTTCAGTACACTTTGAAGCAGTGGAAGCAAGATTTCTGCGTGCATCATTCAGTGCTTTTGTAGATGTGCTTACTCTTGCCACAAAAACAATCGAGGATTTCGGACAAGGATTGGACTTG

Protein sequence

LAILSSLLVSTRIWFTLCSDFEVDYESEKKASIVYNALAVDKELQPDKVKREMAVSDGKLSVHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQGLDL
Homology
BLAST of MS000506 vs. NCBI nr
Match: XP_022141079.1 (uncharacterized protein LOC111011564 [Momordica charantia])

HSP 1 Score: 155.2 bits (391), Expect = 2.9e-34
Identity = 82/86 (95.35%), Postives = 82/86 (95.35%), Query Frame = 0

Query: 14  WFTLCSDFEVDYESEKKASIVYNALAVDKELQPDKVKREMAVSDGKLSVHFEAVEARFLR 73
           W   C DFEVDYESEKKASIVYNALAVDKELQPDKVKREMAVSDGKLSVHFEAVEARFLR
Sbjct: 38  WEFRC-DFEVDYESEKKASIVYNALAVDKELQPDKVKREMAVSDGKLSVHFEAVEARFLR 97

Query: 74  ASFSAFVDVLTLATKTIEDFGQGLDL 100
           ASFSAFVDVLTLATKTIEDFGQGLDL
Sbjct: 98  ASFSAFVDVLTLATKTIEDFGQGLDL 122

BLAST of MS000506 vs. NCBI nr
Match: XP_023553191.1 (uncharacterized protein LOC111810678 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 146.7 bits (369), Expect = 1.0e-31
Identity = 76/85 (89.41%), Postives = 78/85 (91.76%), Query Frame = 0

Query: 14 WFTLCSDFEVDYESEKKASIVYNALAVDKELQPDKVKREMAVSDGKLSVHFEAVEARFLR 73
          W   C DFEVDYESEKKASIVY AL VDKELQPDKVKREM VSDGKLS+HFEAVEARFLR
Sbjct: 15 WEFSC-DFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKLSIHFEAVEARFLR 74

Query: 74 ASFSAFVDVLTLATKTIEDFGQGLD 99
          ASFSAFVDVLTLATKTIEDFGQG+D
Sbjct: 75 ASFSAFVDVLTLATKTIEDFGQGVD 98

BLAST of MS000506 vs. NCBI nr
Match: XP_022923038.1 (uncharacterized protein LOC111430837 [Cucurbita moschata])

HSP 1 Score: 143.7 bits (361), Expect = 8.7e-31
Identity = 74/83 (89.16%), Postives = 78/83 (93.98%), Query Frame = 0

Query: 16 TLCSDFEVDYESEKKASIVYNALAVDKELQPDKVKREMAVSDGKLSVHFEAVEARFLRAS 75
          +LC DFEVDYESEKKASIVY AL VDKELQPDKVKREM VSDGKLS+H EAVEARFLRAS
Sbjct: 10 SLC-DFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKLSIHLEAVEARFLRAS 69

Query: 76 FSAFVDVLTLATKTIEDFGQGLD 99
          FSAFVDVLTLATKTIEDFG+G+D
Sbjct: 70 FSAFVDVLTLATKTIEDFGRGVD 91

BLAST of MS000506 vs. NCBI nr
Match: XP_038895564.1 (uncharacterized protein LOC120083771 [Benincasa hispida])

HSP 1 Score: 142.9 bits (359), Expect = 1.5e-30
Identity = 74/85 (87.06%), Postives = 78/85 (91.76%), Query Frame = 0

Query: 14 WFTLCSDFEVDYESEKKASIVYNALAVDKELQPDKVKREMAVSDGKLSVHFEAVEARFLR 73
          W   C DFEVDYESEKKASIVYNAL VDKELQPDKVKR M+VSDGKLS+HFEAVEARFLR
Sbjct: 15 WEFSC-DFEVDYESEKKASIVYNALIVDKELQPDKVKRVMSVSDGKLSIHFEAVEARFLR 74

Query: 74 ASFSAFVDVLTLATKTIEDFGQGLD 99
          ASFSAFVDVLTLATKT+EDFGQ +D
Sbjct: 75 ASFSAFVDVLTLATKTVEDFGQEVD 98

BLAST of MS000506 vs. NCBI nr
Match: XP_023541073.1 (uncharacterized protein LOC111801345 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142.5 bits (358), Expect = 1.9e-30
Identity = 73/79 (92.41%), Postives = 75/79 (94.94%), Query Frame = 0

Query: 20 DFEVDYESEKKASIVYNALAVDKELQPDKVKREMAVSDGKLSVHFEAVEARFLRASFSAF 79
          DFEVD ESEKKASIVYNAL VDKELQPDKVKREM VSDGKLSVHFEAVEARFLRAS+SAF
Sbjct: 6  DFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKLSVHFEAVEARFLRASYSAF 65

Query: 80 VDVLTLATKTIEDFGQGLD 99
          +DVLTLA KTIEDFGQGLD
Sbjct: 66 LDVLTLAIKTIEDFGQGLD 84

BLAST of MS000506 vs. ExPASy TrEMBL
Match: A0A6J1CHJ5 (uncharacterized protein LOC111011564 OS=Momordica charantia OX=3673 GN=LOC111011564 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.4e-34
Identity = 82/86 (95.35%), Postives = 82/86 (95.35%), Query Frame = 0

Query: 14  WFTLCSDFEVDYESEKKASIVYNALAVDKELQPDKVKREMAVSDGKLSVHFEAVEARFLR 73
           W   C DFEVDYESEKKASIVYNALAVDKELQPDKVKREMAVSDGKLSVHFEAVEARFLR
Sbjct: 38  WEFRC-DFEVDYESEKKASIVYNALAVDKELQPDKVKREMAVSDGKLSVHFEAVEARFLR 97

Query: 74  ASFSAFVDVLTLATKTIEDFGQGLDL 100
           ASFSAFVDVLTLATKTIEDFGQGLDL
Sbjct: 98  ASFSAFVDVLTLATKTIEDFGQGLDL 122

BLAST of MS000506 vs. ExPASy TrEMBL
Match: A0A6J1E8H0 (uncharacterized protein LOC111430837 OS=Cucurbita moschata OX=3662 GN=LOC111430837 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 4.2e-31
Identity = 74/83 (89.16%), Postives = 78/83 (93.98%), Query Frame = 0

Query: 16 TLCSDFEVDYESEKKASIVYNALAVDKELQPDKVKREMAVSDGKLSVHFEAVEARFLRAS 75
          +LC DFEVDYESEKKASIVY AL VDKELQPDKVKREM VSDGKLS+H EAVEARFLRAS
Sbjct: 10 SLC-DFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKLSIHLEAVEARFLRAS 69

Query: 76 FSAFVDVLTLATKTIEDFGQGLD 99
          FSAFVDVLTLATKTIEDFG+G+D
Sbjct: 70 FSAFVDVLTLATKTIEDFGRGVD 91

BLAST of MS000506 vs. ExPASy TrEMBL
Match: A0A6J1G2C3 (uncharacterized protein LOC111450028 OS=Cucurbita moschata OX=3662 GN=LOC111450028 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 9.4e-31
Identity = 75/85 (88.24%), Postives = 77/85 (90.59%), Query Frame = 0

Query: 14 WFTLCSDFEVDYESEKKASIVYNALAVDKELQPDKVKREMAVSDGKLSVHFEAVEARFLR 73
          W   C DFEVD ESEKKASIVYNAL VDKELQPDKVKREM VSDGKLSVHFEAVEARFLR
Sbjct: 15 WEFSC-DFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKLSVHFEAVEARFLR 74

Query: 74 ASFSAFVDVLTLATKTIEDFGQGLD 99
          AS+SAF+DVLTLA KTIEDFGQGLD
Sbjct: 75 ASYSAFLDVLTLAIKTIEDFGQGLD 98

BLAST of MS000506 vs. ExPASy TrEMBL
Match: A0A6J1HX84 (uncharacterized protein LOC111467483 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467483 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.3e-29
Identity = 74/85 (87.06%), Postives = 75/85 (88.24%), Query Frame = 0

Query: 14 WFTLCSDFEVDYESEKKASIVYNALAVDKELQPDKVKREMAVSDGKLSVHFEAVEARFLR 73
          W   C DFEVD ESEKKASIVYNAL VDKELQPDKVKR M VSDGKLSVHFEAVEARFLR
Sbjct: 15 WEFSC-DFEVDCESEKKASIVYNALVVDKELQPDKVKRGMTVSDGKLSVHFEAVEARFLR 74

Query: 74 ASFSAFVDVLTLATKTIEDFGQGLD 99
          AS SAF+DVLTLA KTIEDFGQGLD
Sbjct: 75 ASCSAFLDVLTLAIKTIEDFGQGLD 98

BLAST of MS000506 vs. ExPASy TrEMBL
Match: A0A6J1HSW7 (uncharacterized protein LOC111467483 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467483 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.3e-29
Identity = 72/79 (91.14%), Postives = 73/79 (92.41%), Query Frame = 0

Query: 20  DFEVDYESEKKASIVYNALAVDKELQPDKVKREMAVSDGKLSVHFEAVEARFLRASFSAF 79
           DFEVD ESEKKASIVYNAL VDKELQPDKVKR M VSDGKLSVHFEAVEARFLRAS SAF
Sbjct: 29  DFEVDCESEKKASIVYNALVVDKELQPDKVKRGMTVSDGKLSVHFEAVEARFLRASCSAF 88

Query: 80  VDVLTLATKTIEDFGQGLD 99
           +DVLTLA KTIEDFGQGLD
Sbjct: 89  LDVLTLAIKTIEDFGQGLD 107

BLAST of MS000506 vs. TAIR 10
Match: AT5G53045.1 (unknown protein; Has 122 Blast hits to 122 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 30; Plants - 41; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). )

HSP 1 Score: 112.5 bits (280), Expect = 2.0e-25
Identity = 58/86 (67.44%), Postives = 71/86 (82.56%), Query Frame = 0

Query: 10 STRIWFTLCSDFEVDYESEKKASIVYNALAVDKELQPDKVKREMAVSDGKLSVHFEAVEA 69
          S + W   C + +V +ESE+ A I Y +LAVDKELQPDKV+R M+VS+ KLSVHFEA+EA
Sbjct: 11 SDQTWDFSC-NLDVSFESEEHALIAYTSLAVDKELQPDKVRRVMSVSNNKLSVHFEAIEA 70

Query: 70 RFLRASFSAFVDVLTLATKTIEDFGQ 96
          R LRASFSAFVDVLTLAT+TI++FGQ
Sbjct: 71 RLLRASFSAFVDVLTLATRTIQEFGQ 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022141079.12.9e-3495.35uncharacterized protein LOC111011564 [Momordica charantia][more]
XP_023553191.11.0e-3189.41uncharacterized protein LOC111810678 [Cucurbita pepo subsp. pepo][more]
XP_022923038.18.7e-3189.16uncharacterized protein LOC111430837 [Cucurbita moschata][more]
XP_038895564.11.5e-3087.06uncharacterized protein LOC120083771 [Benincasa hispida][more]
XP_023541073.11.9e-3092.41uncharacterized protein LOC111801345 isoform X2 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CHJ51.4e-3495.35uncharacterized protein LOC111011564 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A6J1E8H04.2e-3189.16uncharacterized protein LOC111430837 OS=Cucurbita moschata OX=3662 GN=LOC1114308... [more]
A0A6J1G2C39.4e-3188.24uncharacterized protein LOC111450028 OS=Cucurbita moschata OX=3662 GN=LOC1114500... [more]
A0A6J1HX842.3e-2987.06uncharacterized protein LOC111467483 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1HSW72.3e-2991.14uncharacterized protein LOC111467483 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
Match NameE-valueIdentityDescription
AT5G53045.12.0e-2567.44unknown protein; Has 122 Blast hits to 122 proteins in 57 species: Archae - 0; B... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015419CTAG/Pcc1 familyPFAMPF09341Pcc1coord: 21..91
e-value: 2.8E-19
score: 69.1
IPR015419CTAG/Pcc1 familyPANTHERPTHR31283EKC/KEOPS COMPLEX SUBUNIT PCC1 FAMILY MEMBERcoord: 14..94
NoneNo IPR availableGENE3D3.30.310.50coord: 15..96
e-value: 1.2E-21
score: 78.5
NoneNo IPR availablePANTHERPTHR31283:SF5GEO08993P1coord: 14..94

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS000506.1MS000506.1mRNA