MS000488 (gene) Bitter gourd (TR) v1

Overview


Name	MS000488
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	splicing factor SF3a60 homolog
Location	scaffold44: 2031181 .. 2038255 (+)
RNA-Seq Expression	MS000488
Synteny	MS000488

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCTACTCTGCTAGAGGTGACGCGCGCCTCGCACGAGGAGGTGGAGCGACTTGAGCGTCTTATAGTGAAGGAGCTCCAAAATGAACCTGCTTCCGGCAAGGACCGTTTGCTACAGAGTCATCGAGTCCGCAACATGATTGACACAATCATGTCCACCACCGAGAAACTCGTACTTTCATCTTACACTTACTTCCTCTGATTTCTGTATTCTCGCTTTCAAATTTTTTAGGACGCAATGGGGCGTGGAAGTTTTAGGTTTTTTGGCGCTCTTTTGTAAAATTTTGTGTTTTCCTTGTAGAGAGGGAGTGTGCATTTGAATTGTAACTTTTCGATGACATGCTAGTGCAAGATTTTGGTTTCGCAGCATTTGGGAAGAGATGTAATTGCTTCTACGAGCAAAGTTTGTTTACTTTGATTGTTGCTACGGACCATAGTTGAAAATACTGTTCAATGGAAAAATAAAGCTAGGCTAGAAGTTTTCATTTCAGTGGAAAAGAATAACTCTCTCCCTTTACCACTAGAGAATTTTGGATATATAATGCAAAGGAACGGAAGCAGTACAAACTAGAATCTGCTTCAATCAGGAAGCTTGGTGATATAGGATCGGGCCATTTTCTTTGAGTTGGGAAAAAATGACCTCTACAAAATTCCTGCTGTGACCTAATTTTCTGATAAGCTAGATGTATTACTTTGTTTGATTTGTGCCTGTCACCTTATGTTATCATTCCTCGATGGTATTATTTTCTTTGACCTGGACTGAACTCTTCTCTACCCCTCCCCGCCATTATTGCTTTTGTATGCAGGTTGAGATTTATGAAGATAAGGATAGTGCCAGGAAAGATGAGATTGCAGCACTCGGAGGGCAAACAACTTCAGGAACCAACGTTTTTAGTGCATTTTATGATAGACTGAAAGAGGTCATCAGCAATATTTCATTATACCTTTGTCTATCTATTTTAGAATTAATTCACGTCTTCCACATGAATGTTAACAAGTGAATATGGAGAAAAGAGGTGGAGTTCAAGTATATAACTTTGTTATTTATTTATTTTAACAATAGACTATTTCATTGGCAAAATGAAATGTAAAAAAGGGGCCATAGACTGGTTGTAGTGTTTATGAATGTTCCTCATGTACACCGGAAGCTTCCTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAATTTTTTAAAAGGTTTTGTAGATGATGGAGAAGTTTGTACTTGAAGTACTAGTAAAATTTTTATTCCTACATTTCTTACCAAAGCCTTTTGCTTTCACAACTCCTAGTAGGAAGTCCCAATCAACTTTGTTGAAAGCTTTTTCTACGTTTAGCTTGAAGACAAGACCCTATTTCTTGTTTTTGACTTTTCATCAATGAGCTAATTGGCTTGAGGCTTGGATTTCCTCCCCTTTTTTATAATTTTATATTTTCTATGAAATTGTTTCTTATATAAAAAATCAGAGTTACACGTTTGTTGTTTTTGGATGTGATCATACCGTCATTAACATATTGAATCATCACTTTGCTGTGAAGTGCATGTGGGTGAGGTTAGGTATTAGTTGGGTGACCAACTGGAAAGTCCAGCGATGTTTCTGTTCTTGCTTCAACCATAGAGACATGTATCTTAGAAAACTTATTAAATACAATACTCCAAGAGTAAATGAGAAAAATTTGAGTAACATCTGCCTAGAGGTTTCGTGTTTGAATGTTCGGGTGAGCTTAATAAGGAACACTCTTGATGTTCCAGAGTTTGAGCCTTAGAGTTGGCGTGGACTTTAAAAAGAAAGAGAAAAATATAAATTTGTGATCACTAGTAATTTGAAATATTATTTCAAAATTATCAGTTGCTTACTTGCTTTATATCAAGCTCAATTACATTGTGTGCAGATTCGTGAATACCATAGAAGGCATCCAGCTGCACGTGTTGTAGATGTTAATGAGGATGATGGTCTTCTCAAAGAGGAACCACAAATTGAGTTCAGTGGAGAGGTCTCTCTATTTCTTTTTATGACTGAAATTTGCATAGAATTACTTGACTGTAGTTCTTTCATGGTTAACACTGTAGTTTTTCATAAAACCGGTCTATTGCCTGGCCATATATGGGAAACTTCTCTTGAAATTACTCCCATTACTCCAAGTCCAATTATGAAAATTATTCTCATGCTTGCATTTTCATATTGTATGTCAACACAAAGCATTCTTATGAAAGAAGGGCTTTTTCTATTGCCTAGTAATAGGGAGCACAAGTTTTTGATAATTAACGCAATATACAAATTTACAAATTTGCACATCTGGAAAAAGGTGAATTGACTGCATCAAGAAATATATATATTATTTTTGGCCATAATAACCAAAAGTTGTTTTTTGACGTAAAAAGATTTGATAATTTTCAAAGTCTTAAACCCCCTTATCTTTTTATAAGAGAATAAATTCCAGTCTTTTAGATTAATCAAAGCTTATTTGTGAGTTTGTGTTGACTAGTGGGGGACATTTTGAGAGAGCCCCTATTTGGTGGGTTAGATAGAAGATTATTGGTTAAAATCTTATTTTGGTTCCTAAGCTTTCACACTTTTTTTTTTTTTTATAGGACACACTTGATTTATTTGTATTTTTTTACTTTTAAATGTTTTTCTTTGTTCCTTGAACTGCAAATAAAAAATCTATTGTGTTCCTCGCCGCTAAACTTTCATATTACATTTAATAGGAATTTTATGTGTATTATGTGGAATTGTGTTCTAAGCTATATGTATTTGTTTGGTATCAAATTCGAAATTAGGTGATGTATGATTTATGTTAAATATAATGCAAAAATTTAAAGACAATGTTAAAACAAGTACTAATGAAGTTTGGGGACCAAAACAAAATATTTAAAGCTATAAGGTTCAAAGAAATGTAAATGTGAAAGTCCAGGGATCAGAATAGGATCACCAACATTATCGTTTTACGTGCATGGAATGGATATTGGAAACTACACCCCCCTTTATGTATAATGTGTGTGTGTATCCATATTTCCTGTTTCAGTTATTGACTTATTTATATTTTAGGAAGCATTTGGACGGTATCTTGATTTGCACGAACTGTACAACCAATATATTAATTCTAAATTTGGAGAGCCCATTGAGTACTCTTCTTACCTGGATGTTTTTTCACAACCCCAGAAAATCCCTCGCAAACTAAAGATTTCAAGGTAAACAGATCAATTTTCTTCCTCAAATATGATTGTGCTATTGGTTAATGATTTGTTTAAGTGTAAATAAGTGGTGTCTTATTTTGAGTTCTTCTAATATCTACTTTATACAGACAATACAGGGAATACATGGAGAATCTACTTGCTTACCTCATTTATTTTTTCCAGCGTACAGAGCCCTTGCAAGATCTTGATAGAATATTCTCAAAGGTTACTTTAATTATGGTCTTTTCTCCTTATTTTAACATTCGATTTTCACATTATGCATTATGTACCATTCTTGGAACTGGATCTTTAATAGGCTGGTTTCATTATAGTTTTCTGCGTGTGACAATTTTACTGAGTTGAAAGCGTGCTGTTTGCAAGCTATCTATTGTCTGCATGTTTTGATAAGGCTTTAGGCTGAGCATTGTTCTACTGATGAATGATTAATGTGAGGGTGTTTTGATAGGGTGAATCTGAATTTGAAGAGCGATGGGTTACTGGCACAATTGAAGGATGGGAGAACACTAGTAAAGATGATGGCCATGATACTGACCTACTTAATCTTATTGATCTTGACTATTATAGCACAGTGGAAGAGCTGGTGGAACTAGGTCCTGAAAGGTTAAAGGAGGTAAGAAGTGACTCATGATGCCATATTATGTGTGTTGCAGAAGTTCTACATATGGCATTACTGCTTTCTTTTGCTACCTTCCTTAATTTCTATATCACTTTCTGGTAGGGGTTGGCAGCATTGGGACTGAAGACTGGTGGTACAGTTCAGCAGCGTGCAGAGAGGCTTTTCCTCACTAAGGTAGTTTTTTACTGCCTTTTTGTCCAACATAGGATGTCATATGTTGTGAACCTACAGTAATTCAAGCATAACGGTAAAGTTATTGTGCAGATTACTTTCTACTTTGAGGATATATTTTTTCTCGTGTGTATGTATACAATCATGAATCTCTTTTTTTTATATGTATACAATCATGAATCTCTATCTATGTCTTTAAGACTATATCTATAGACTCTCTTTCTCTCTCTCCCTCTCTCTCTCTCTCTATATATATATATATATAAAATTCTGACGAGCAATTGATTTTTAATGTAATGTCCTGCATAGTGCTATCCGGACAACTGCTTACCCAAATTTTTCTTTGTACATATTTGATTTTCAATAAAATTTTGTTTCTTGTAAAAAAGATCCAGCCCGTTGCTGGAAGTTTATGGTGATAGCATACACATAACATGATGTTCCTAATGTAGCAAATACTCTTTTTCCTTTTTTGTCTTTTAGATAAGTAGTATATGTCCTATATGATTAGCAAAATTTGATTTTAAGGCCAGTCTGCAATAGGATGATCAACATATAATTCAAACAGTGAATGTCATGGTTATGTTCTCTTTTGTTTACAAGAATAACTGGGTCTTGTTTCAGTGTGGTCGTCTGTATCTTGGATTTTCCCATAAATTAATGCTGATCTAGTGTTAGATTCCAGAAATAAATCTATCCGTATTTCTGCCAGTTATGTTATTTGTGATGAAAATATGCATTTAATTTTCCTCGAGCATTGATAGGTAAGAGACATCAGACAACTTTATTTTTCTGGGATGTCATATAATCTTATACCTCAAAATTTTTTCAAGGCTTGGAATATTATTTTATTAATTTTACAGTTCATTTGACACCTCTATTCTTTGCAGCATACACCTCTACAATTGTTGGACAAAAAACACTTTGCGAAAGTGTCTCGTGAACCGATTCAGAATGGGGCAGCTGCAACTTCACTACACGATGAAAATTTGAAACAAGTTGCCCTGATGGAAGCAAAAATTGAAAAATTGTGCGATCTTCTGGATGAGGTTAGCTTTCAGGAACGATCAAAACATCCCAGTTTACTCATATCCTTCATAATTTATATACTCCAAAATAGATAATTTTGGGACTTCTTAATAAGCATGTTTTGTTTATGGCCATTTTCAGACGATTGCTCGAACCAAAGACAATATTGTTAAGAAGCAAGCATTAACTTATGAGGAAATTGAAGCAGAGCGTGAGGAGGTGAGAAAACAGTAGTTTGTCGTTCTTTGTCCATTCAAGCTTCTTCCTTCCCCAGTGATGTTAAATATATTTACCTATTAATATAACTTGAGAAATATATTATTTCTGAGATGGTTACCATGCATGTCATCAACGAAGAATTCTGCCTAAACTGTGGAGAGGTGTTCGTAGGTTATGTATTTGATATTGTTATGTAATATTTATATCAGAAGTTTATTTAAAAGTTTATAAATAGCATCCCAAATCTGGCTTTATGGTAGACTGATTTAGCCTTAATTAGAACCTTACCAAAATGGTATCTGGTTCACCGAATTTTACTTCCTCATCGTGAATGGCCTGCATGCCTTATAAACGATGGTTTATTATGTGGGTTCAAGATCTTTTTTCCTCTGTGTATGTGCATTGGTGCCCGCTTGGCAAGAAAACTGAGATTTTAATAAACCATTCACCATTTACTTGCTGTAAAAGTTTAATTATTTAATAGCCTTTTGATGTGGCAATTCTGGCAGGAAGAGACACAAGCTGAATCTGAAAGTGACGATGAAGAGCAACAGATTTATAATCCCCTCAAGCTCCCAATGGGTTGGGATGGTAAACCCATACCTTACTGGCTCTACAAGCTTCATGGCCTTGGTCAGGTAAATCATTCCATCCCCAACCAAAGCCTGTATCATGGGAAGGAAAATATAGCATATTAGGAGCCTAATATCTGTATGTCCACTTACTAATTAGTCACTACACTTTGTCATTTTTCACTTATTCGGAAGTAAATTCCTCTTGAAGGAGCATAGTTTTCATTTTAGGGAGCACATCAATTGGAACTTGATACTTCAATGGAGTTGACCTTATTTACTGTTATTTAGTTGTTTGTTTGTCTTTTCAAGTCAATATGTTATTGTATGTGAAAAACATGATATAGTTATGACTTTCATAAACTTTCTATAGACTAATCTCAAGAAAATAAGCAACATTTTGGAAGCCATGGTTGCACTTGTTATTTTCATAATCCCTATAGTTCAACAGCATGTTGTGGTTGCTTTTGTTCTCAACCTTTTCAAGTTAACGTGGAAAGATTTGCTTGAGAATGTGATAGTTTTGTGATACAGGAATTTAAATGTGAGATATGCGGAAACTATAGTTACTGGGGTCGTAGAGCTTTTGAGCGACATTTCAAGGAATGGCGTCATCAGCATGGAATGCGTTGCCTTGGTATTCCGAATACAAAGAACTTTAATGAAATCACGTCAATTGAGGTAGGCTTTTGCTGCTACTTTGATCTCCCTCTTCCGTGAGTGTATTTGTTTTTTTAATAAAAGCAACTGTACTTTTTATAGACTAAAATGTACAGTAAAGGGTTCTGACCAAGGATGGAGCTTACAAATATTTGCTCTAATCTTTATTGCTAAAGAAGAATTTAGTTATAAAGACTAGAAAGAGTACACCAAGAGGAGCTCACATTCGTTGGCTACATGTTGACATTTCACTACATTTTTTATAAAAGATATTGCCCTTTCATGTTTATGTTTTTTTTTTTTATATAGTTATGACTTTACGGATATGCCAAAAATTTTTAGTCCATGGTCAGTCTAATACTAAGAAATGCCTGCATGGTTGCACACTTAATTAAATTCTTCAGTGAGAAGATCTTGTATTCACTTTTCTGATCTTACAGGAGGCAAAAGACTTGTGGAAAAGAATTCAAGAACGACAAGGAGTTAACAAGTGGCGACCAGATCTGGAAGAAGAATACGAAGATAAAGAGGGTAACATTTACAATAAGAAGACATATACAGATCTGCAACGCCAGGGGTTGATA

mRNA sequence

ATGTCGTCTACTCTGCTAGAGGTGACGCGCGCCTCGCACGAGGAGGTGGAGCGACTTGAGCGTCTTATAGTGAAGGAGCTCCAAAATGAACCTGCTTCCGGCAAGGACCGTTTGCTACAGAGTCATCGAGTCCGCAACATGATTGACACAATCATGTCCACCACCGAGAAACTCGTTGAGATTTATGAAGATAAGGATAGTGCCAGGAAAGATGAGATTGCAGCACTCGGAGGGCAAACAACTTCAGGAACCAACGTTTTTAGTGCATTTTATGATAGACTGAAAGAGATTCGTGAATACCATAGAAGGCATCCAGCTGCACGTGTTGTAGATGTTAATGAGGATGATGGTCTTCTCAAAGAGGAACCACAAATTGAGTTCAGTGGAGAGGAAGCATTTGGACGGTATCTTGATTTGCACGAACTGTACAACCAATATATTAATTCTAAATTTGGAGAGCCCATTGAGTACTCTTCTTACCTGGATGTTTTTTCACAACCCCAGAAAATCCCTCGCAAACTAAAGATTTCAAGACAATACAGGGAATACATGGAGAATCTACTTGCTTACCTCATTTATTTTTTCCAGCGTACAGAGCCCTTGCAAGATCTTGATAGAATATTCTCAAAGGGTGAATCTGAATTTGAAGAGCGATGGGTTACTGGCACAATTGAAGGATGGGAGAACACTAGTAAAGATGATGGCCATGATACTGACCTACTTAATCTTATTGATCTTGACTATTATAGCACAGTGGAAGAGCTGGTGGAACTAGGTCCTGAAAGGTTAAAGGAGGGGTTGGCAGCATTGGGACTGAAGACTGGTGGTACAGTTCAGCAGCGTGCAGAGAGGCTTTTCCTCACTAAGCATACACCTCTACAATTGTTGGACAAAAAACACTTTGCGAAAGTGTCTCGTGAACCGATTCAGAATGGGGCAGCTGCAACTTCACTACACGATGAAAATTTGAAACAAGTTGCCCTGATGGAAGCAAAAATTGAAAAATTGTGCGATCTTCTGGATGAGACGATTGCTCGAACCAAAGACAATATTGTTAAGAAGCAAGCATTAACTTATGAGGAAATTGAAGCAGAGCGTGAGGAGGAAGAGACACAAGCTGAATCTGAAAGTGACGATGAAGAGCAACAGATTTATAATCCCCTCAAGCTCCCAATGGGTTGGGATGGTAAACCCATACCTTACTGGCTCTACAAGCTTCATGGCCTTGGTCAGGAATTTAAATGTGAGATATGCGGAAACTATAGTTACTGGGGTCGTAGAGCTTTTGAGCGACATTTCAAGGAATGGCGTCATCAGCATGGAATGCGTTGCCTTGGTATTCCGAATACAAAGAACTTTAATGAAATCACGTCAATTGAGGAGGCAAAAGACTTGTGGAAAAGAATTCAAGAACGACAAGGAGTTAACAAGTGGCGACCAGATCTGGAAGAAGAATACGAAGATAAAGAGGGTAACATTTACAATAAGAAGACATATACAGATCTGCAACGCCAGGGGTTGATA

Coding sequence (CDS)

ATGTCGTCTACTCTGCTAGAGGTGACGCGCGCCTCGCACGAGGAGGTGGAGCGACTTGAGCGTCTTATAGTGAAGGAGCTCCAAAATGAACCTGCTTCCGGCAAGGACCGTTTGCTACAGAGTCATCGAGTCCGCAACATGATTGACACAATCATGTCCACCACCGAGAAACTCGTTGAGATTTATGAAGATAAGGATAGTGCCAGGAAAGATGAGATTGCAGCACTCGGAGGGCAAACAACTTCAGGAACCAACGTTTTTAGTGCATTTTATGATAGACTGAAAGAGATTCGTGAATACCATAGAAGGCATCCAGCTGCACGTGTTGTAGATGTTAATGAGGATGATGGTCTTCTCAAAGAGGAACCACAAATTGAGTTCAGTGGAGAGGAAGCATTTGGACGGTATCTTGATTTGCACGAACTGTACAACCAATATATTAATTCTAAATTTGGAGAGCCCATTGAGTACTCTTCTTACCTGGATGTTTTTTCACAACCCCAGAAAATCCCTCGCAAACTAAAGATTTCAAGACAATACAGGGAATACATGGAGAATCTACTTGCTTACCTCATTTATTTTTTCCAGCGTACAGAGCCCTTGCAAGATCTTGATAGAATATTCTCAAAGGGTGAATCTGAATTTGAAGAGCGATGGGTTACTGGCACAATTGAAGGATGGGAGAACACTAGTAAAGATGATGGCCATGATACTGACCTACTTAATCTTATTGATCTTGACTATTATAGCACAGTGGAAGAGCTGGTGGAACTAGGTCCTGAAAGGTTAAAGGAGGGGTTGGCAGCATTGGGACTGAAGACTGGTGGTACAGTTCAGCAGCGTGCAGAGAGGCTTTTCCTCACTAAGCATACACCTCTACAATTGTTGGACAAAAAACACTTTGCGAAAGTGTCTCGTGAACCGATTCAGAATGGGGCAGCTGCAACTTCACTACACGATGAAAATTTGAAACAAGTTGCCCTGATGGAAGCAAAAATTGAAAAATTGTGCGATCTTCTGGATGAGACGATTGCTCGAACCAAAGACAATATTGTTAAGAAGCAAGCATTAACTTATGAGGAAATTGAAGCAGAGCGTGAGGAGGAAGAGACACAAGCTGAATCTGAAAGTGACGATGAAGAGCAACAGATTTATAATCCCCTCAAGCTCCCAATGGGTTGGGATGGTAAACCCATACCTTACTGGCTCTACAAGCTTCATGGCCTTGGTCAGGAATTTAAATGTGAGATATGCGGAAACTATAGTTACTGGGGTCGTAGAGCTTTTGAGCGACATTTCAAGGAATGGCGTCATCAGCATGGAATGCGTTGCCTTGGTATTCCGAATACAAAGAACTTTAATGAAATCACGTCAATTGAGGAGGCAAAAGACTTGTGGAAAAGAATTCAAGAACGACAAGGAGTTAACAAGTGGCGACCAGATCTGGAAGAAGAATACGAAGATAAAGAGGGTAACATTTACAATAAGAAGACATATACAGATCTGCAACGCCAGGGGTTGATA

Protein sequence

MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLKEEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEPIEYSSYLDVFSQPQKIPRKLKISRQYREYMENLLAYLIYFFQRTEPLQDLDRIFSKGESEFEERWVTGTIEGWENTSKDDGHDTDLLNLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKHFAKVSREPIQNGAAATSLHDENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYEEIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI

Homology

[Close]

BLAST of MS000488 vs. NCBI nr
Match: XP_022140873.1 (splicing factor SF3a60 homolog [Momordica charantia])

HSP 1 Score: 1010.4 bits (2611), Expect = 5.6e-291
Identity = 507/508 (99.80%), Postives = 507/508 (99.80%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVE 60
           MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVE
Sbjct: 1   MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVE 60

Query: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120
           IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK
Sbjct: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120

Query: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEPIEYSSYLDVFSQPQKIPRKLKISRQY 180
           EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEPIEYSSYLDVFSQPQKIPRKLKISRQY
Sbjct: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEPIEYSSYLDVFSQPQKIPRKLKISRQY 180

Query: 181 REYMENLLAYLIYFFQRTEPLQDLDRIFSKGESEFEERWVTGTIEGWENTSKDDGHDTDL 240
           REYMENLLAYLIYFFQRTEPLQDLDRIFSKGESEFEERWVTGTIEGWENTSKDDGHDTD 
Sbjct: 181 REYMENLLAYLIYFFQRTEPLQDLDRIFSKGESEFEERWVTGTIEGWENTSKDDGHDTDP 240

Query: 241 LNLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300
           LNLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH
Sbjct: 241 LNLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300

Query: 301 FAKVSREPIQNGAAATSLHDENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360
           FAKVSREPIQNGAAATSLHDENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE
Sbjct: 301 FAKVSREPIQNGAAATSLHDENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360

Query: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420
           EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN
Sbjct: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420

Query: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480
           YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP
Sbjct: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480

Query: 481 DLEEEYEDKEGNIYNKKTYTDLQRQGLI 509
           DLEEEYEDKEGNIYNKKTYTDLQRQGLI
Sbjct: 481 DLEEEYEDKEGNIYNKKTYTDLQRQGLI 508

[Close]

BLAST of MS000488 vs. NCBI nr
Match: XP_038875231.1 (splicing factor SF3a60 homolog [Benincasa hispida])

HSP 1 Score: 961.8 bits (2485), Expect = 2.3e-276
Identity = 482/508 (94.88%), Postives = 495/508 (97.44%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVE 60
           MSSTLLEVTRASHEEVERLERLIVKELQNEP S KDRLLQSHRVRNMIDTIMSTT+KLVE
Sbjct: 1   MSSTLLEVTRASHEEVERLERLIVKELQNEPTSAKDRLLQSHRVRNMIDTIMSTTDKLVE 60

Query: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120
           IYEDKD+ARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK
Sbjct: 61  IYEDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120

Query: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEPIEYSSYLDVFSQPQKIPRKLKISRQY 180
           EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGE IEYSSYLDVFSQPQKI RKLKISRQY
Sbjct: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKISRQY 180

Query: 181 REYMENLLAYLIYFFQRTEPLQDLDRIFSKGESEFEERWVTGTIEGWENTSKDDGHDTDL 240
           REY+ENLLAYLIYFFQRTEPLQDLDRIFSK ESEF+ERW  GTIEGWENT +++GHD+  
Sbjct: 181 REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFDERWTIGTIEGWENTGQENGHDSAQ 240

Query: 241 LNLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300
            +LIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH
Sbjct: 241 HSLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300

Query: 301 FAKVSREPIQNGAAATSLHDENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360
           FAK+SR+PIQNGAAA S ++ENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE
Sbjct: 301 FAKLSRQPIQNGAAAASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360

Query: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420
           EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN
Sbjct: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420

Query: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480
           YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP
Sbjct: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480

Query: 481 DLEEEYEDKEGNIYNKKTYTDLQRQGLI 509
           DLEEEYEDKEGNIYNKKTYTDLQRQGLI
Sbjct: 481 DLEEEYEDKEGNIYNKKTYTDLQRQGLI 508

[Close]

BLAST of MS000488 vs. NCBI nr
Match: XP_011651597.1 (splicing factor SF3a60 homolog [Cucumis sativus] >KGN58266.1 hypothetical protein Csa_017628 [Cucumis sativus])

HSP 1 Score: 961.1 bits (2483), Expect = 3.9e-276
Identity = 482/508 (94.88%), Postives = 496/508 (97.64%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVE 60
           MSSTLLEVTR+SHEEVERLERLIVKELQNEPASGKDRLLQSHRVR+MIDTIMSTTEKLVE
Sbjct: 1   MSSTLLEVTRSSHEEVERLERLIVKELQNEPASGKDRLLQSHRVRSMIDTIMSTTEKLVE 60

Query: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120
           IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDV+EDDGLLK
Sbjct: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVSEDDGLLK 120

Query: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEPIEYSSYLDVFSQPQKIPRKLKISRQY 180
           EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGE IEYSSYLDVFSQPQKI +KLK SRQY
Sbjct: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISQKLKFSRQY 180

Query: 181 REYMENLLAYLIYFFQRTEPLQDLDRIFSKGESEFEERWVTGTIEGWENTSKDDGHDTDL 240
           REY+ENLLAYLIYFFQRTEPLQDLDRIFSK ESEFEERWV GTIEGWENTS+D+GHD+  
Sbjct: 181 REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWVIGTIEGWENTSQDNGHDSAQ 240

Query: 241 LNLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300
            +LIDLDYYSTVEELVELGPERLKEGL ALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH
Sbjct: 241 HSLIDLDYYSTVEELVELGPERLKEGLMALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300

Query: 301 FAKVSREPIQNGAAATSLHDENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360
           FAK+SR+PIQNG+A  S ++ENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE
Sbjct: 301 FAKLSRQPIQNGSAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360

Query: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420
           EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN
Sbjct: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420

Query: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480
           YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP
Sbjct: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480

Query: 481 DLEEEYEDKEGNIYNKKTYTDLQRQGLI 509
           DLEEEYEDKEGNIYNKKTYTDLQRQGLI
Sbjct: 481 DLEEEYEDKEGNIYNKKTYTDLQRQGLI 508

[Close]

BLAST of MS000488 vs. NCBI nr
Match: TYK29174.1 (splicing factor 3A subunit 3 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 960.3 bits (2481), Expect = 6.6e-276
Identity = 480/508 (94.49%), Postives = 495/508 (97.44%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVE 60
           MSSTLLEVTR+SHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKL+E
Sbjct: 1   MSSTLLEVTRSSHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLIE 60

Query: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120
           IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDV+EDDGLLK
Sbjct: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVSEDDGLLK 120

Query: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEPIEYSSYLDVFSQPQKIPRKLKISRQY 180
           EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGE IEYSSYLD+FSQPQKI +KLK SRQY
Sbjct: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDIFSQPQKISQKLKFSRQY 180

Query: 181 REYMENLLAYLIYFFQRTEPLQDLDRIFSKGESEFEERWVTGTIEGWENTSKDDGHDTDL 240
           REY+ENLLAYLIYFFQRTEPLQDLDRIFSK ESEFEERW  GTIEGWENTS+D+GHD+  
Sbjct: 181 REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWAIGTIEGWENTSQDNGHDSAQ 240

Query: 241 LNLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300
            +LIDLDYYS+VEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH
Sbjct: 241 HSLIDLDYYSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300

Query: 301 FAKVSREPIQNGAAATSLHDENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360
           FAK+SR+PIQNG A  S ++ENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE
Sbjct: 301 FAKLSRQPIQNGMAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360

Query: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420
           EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN
Sbjct: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420

Query: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480
           YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP
Sbjct: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480

Query: 481 DLEEEYEDKEGNIYNKKTYTDLQRQGLI 509
           DLEEEYEDKEGNIYNKKTYTDLQRQGLI
Sbjct: 481 DLEEEYEDKEGNIYNKKTYTDLQRQGLI 508

[Close]

BLAST of MS000488 vs. NCBI nr
Match: XP_008466807.1 (PREDICTED: splicing factor 3A subunit 3 isoform X1 [Cucumis melo] >KAA0050498.1 splicing factor 3A subunit 3 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 957.2 bits (2473), Expect = 5.6e-275
Identity = 479/508 (94.29%), Postives = 494/508 (97.24%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVE 60
           MSSTLLEVTR+SHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKL+E
Sbjct: 1   MSSTLLEVTRSSHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLIE 60

Query: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120
           IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDV+EDDGLLK
Sbjct: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVSEDDGLLK 120

Query: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEPIEYSSYLDVFSQPQKIPRKLKISRQY 180
           EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGE IEYSSYLD+FSQPQKI +KLK SRQY
Sbjct: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDIFSQPQKISQKLKFSRQY 180

Query: 181 REYMENLLAYLIYFFQRTEPLQDLDRIFSKGESEFEERWVTGTIEGWENTSKDDGHDTDL 240
           REY+ENLLAYLIYFFQRTEPLQDLDRIFSK ESEFEERW  GTIEGWENTS+D+GHD+  
Sbjct: 181 REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWAIGTIEGWENTSQDNGHDSAQ 240

Query: 241 LNLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300
            +LIDLDYYS+VEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH
Sbjct: 241 HSLIDLDYYSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300

Query: 301 FAKVSREPIQNGAAATSLHDENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360
           FAK+SR+PIQN  A  S ++ENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE
Sbjct: 301 FAKLSRQPIQNWMAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360

Query: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420
           EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN
Sbjct: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420

Query: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480
           YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP
Sbjct: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480

Query: 481 DLEEEYEDKEGNIYNKKTYTDLQRQGLI 509
           DLEEEYEDKEGNIYNKKTYTDLQRQGLI
Sbjct: 481 DLEEEYEDKEGNIYNKKTYTDLQRQGLI 508

[Close]

BLAST of MS000488 vs. ExPASy Swiss-Prot
Match: Q9FG01 (Splicing factor SF3a60 homolog OS=Arabidopsis thaliana OX=3702 GN=ATO PE=1 SV=1)

HSP 1 Score: 778.9 bits (2010), Expect = 3.6e-224
Identity = 389/509 (76.42%), Postives = 437/509 (85.85%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVE 60
           MSSTLLE TR++HEEVERLERL+V++LQ EP S KDRL+Q HRVR+MI++IM TTEKLVE
Sbjct: 1   MSSTLLEQTRSNHEEVERLERLVVEDLQKEPPSSKDRLVQGHRVRHMIESIMLTTEKLVE 60

Query: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNED-DGLL 120
            YEDKD A  DEIAALGGQT +GTNVFS FYDRLKEIREYH+RHP+ R+VD NED +  L
Sbjct: 61  TYEDKDGAWDDEIAALGGQTATGTNVFSEFYDRLKEIREYHKRHPSGRLVDANEDYEARL 120

Query: 121 KEEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEPIEYSSYLDVFSQPQKIPRKLKISRQ 180
           KEEP I FSGEE  GRYLDLH++YNQYINSKFGE +EYS+YLDVFSQP+KIPRKLK+SRQ
Sbjct: 121 KEEPIIAFSGEEGNGRYLDLHDMYNQYINSKFGERVEYSAYLDVFSQPEKIPRKLKLSRQ 180

Query: 181 YREYMENLLAYLIYFFQRTEPLQDLDRIFSKGESEFEERWVTGTIEGWENTSKDDGHDTD 240
           Y +YME LL YL+YFFQRTEPLQDLDRI SK  S+FEE++  G +EG +N      H   
Sbjct: 181 YMKYMEALLEYLVYFFQRTEPLQDLDRILSKVCSDFEEQYADGIVEGLDNELIPSQH--- 240

Query: 241 LLNLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKK 300
              +IDLDYYSTVEELV++GPE+LKE L ALGLK GGT QQRAERLFLTKHTPL+ LDKK
Sbjct: 241 --TVIDLDYYSTVEELVDVGPEKLKEALGALGLKVGGTPQQRAERLFLTKHTPLEKLDKK 300

Query: 301 HFAKVSREPIQNGAAATSLHDENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTY 360
           HFA+      QNG A ++   EN K++AL EAK++KLC+LLDETI RTK NIVKKQ+LTY
Sbjct: 301 HFARPPHNGKQNGDAKSTHESENAKEIALTEAKVKKLCNLLDETIERTKQNIVKKQSLTY 360

Query: 361 EEIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICG 420
           EE+E ERE EE   E ESDDE+  IYNPLKLP+GWDGKPIPYWLYKLHGLGQEFKCEICG
Sbjct: 361 EEMEGEREGEEANTELESDDEDGLIYNPLKLPIGWDGKPIPYWLYKLHGLGQEFKCEICG 420

Query: 421 NYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWR 480
           NYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAK+LWKRIQERQGVNKWR
Sbjct: 421 NYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKRIQERQGVNKWR 480

Query: 481 PDLEEEYEDKEGNIYNKKTYTDLQRQGLI 509
           P+LEEEYED+EGNIYNKKTY+DLQRQGLI
Sbjct: 481 PELEEEYEDREGNIYNKKTYSDLQRQGLI 504

[Close]

BLAST of MS000488 vs. ExPASy Swiss-Prot
Match: Q12874 (Splicing factor 3A subunit 3 OS=Homo sapiens OX=9606 GN=SF3A3 PE=1 SV=1)

HSP 1 Score: 438.3 bits (1126), Expect = 1.2e-121
Identity = 247/516 (47.87%), Postives = 335/516 (64.92%), Query Frame = 0


Query: 4   TLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYE 63
           T+LE  R  HEE ERL  ++ KE+  + ++ +D++   HR R M D  M  +  L ++Y+
Sbjct: 3   TILEQQRRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDLYD 62

Query: 64  DKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVN-EDDGLLK-- 123
           DKD  RK+E+ A+     SG N F+ FY+RLK+I+E+HR+HP    V ++ E + LLK  
Sbjct: 63  DKDGLRKEELNAI-----SGPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKAR 122

Query: 124 ----EEPQ--IEFSGEEAFGRYLDLHELYNQYINSKFGEPIEYSSYLDVFSQPQKIPRKL 183
               EE Q  +EF+ EE +GRYLDLH+ Y +YIN K  E ++Y +YL +F Q   IP++ 
Sbjct: 123 ENPSEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQLFDIPKER 182

Query: 184 KISRQYREYMENLLAYLIYFFQRTEPLQDLDRIFSKGESEFEERWVTGTIEGW-ENTSKD 243
           K + +Y+ Y+E LL YL  +  R +PLQD + +F K ++EFE++W  GT  GW + TS  
Sbjct: 183 K-NAEYKRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQAEFEKKWENGTFPGWPKETSSA 242

Query: 244 DGHDTDLLNLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPL 303
             H    L   DL  +S+ EEL  LG +RLK  L ALGLK GGT+++RA+RLF TK   L
Sbjct: 243 LTHAGAHL---DLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKGKSL 302

Query: 304 QLLDKKHFAKVSREPIQNGAAATSLHDENLKQVALMEAKIEKLCDLLDETIARTKDNIVK 363
           + LD   FAK    P   G   T    E  K +A +EA+I +  ++L E    T +N+ +
Sbjct: 303 ESLDTSLFAK---NPKSKG---TKRDTERNKDIAFLEAQIYEYVEILGEQRHLTHENVQR 362

Query: 364 KQALTYEEIEAEREEEETQAESESDDEEQQ-IYNPLKLPMGWDGKPIPYWLYKLHGLGQE 423
           KQA T E  E E EEEE  +ESES+DEE + IYNP  LP+GWDGKPIPYWLYKLHGL   
Sbjct: 363 KQARTGE--EREEEEEEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNIN 422

Query: 424 FKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQER 483
           + CEICGNY+Y G +AF+RHF EWRH HGMRCLGIPNT +F  +T IE+A  LW +++ +
Sbjct: 423 YNCEICGNYTYRGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQ 482

Query: 484 QGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI 509
           +   +W+PD EEEYED  GN+ NKKTY DL+RQGL+
Sbjct: 483 KASERWQPDTEEEYEDSSGNVVNKKTYEDLKRQGLL 501

[Close]

BLAST of MS000488 vs. ExPASy Swiss-Prot
Match: Q9D554 (Splicing factor 3A subunit 3 OS=Mus musculus OX=10090 GN=Sf3a3 PE=1 SV=2)

HSP 1 Score: 437.2 bits (1123), Expect = 2.6e-121
Identity = 246/516 (47.67%), Postives = 335/516 (64.92%), Query Frame = 0


Query: 4   TLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYE 63
           T+LE  R  HEE ERL  ++ KE+  + ++ +D++   HR R M D  M  +  L ++Y+
Sbjct: 3   TILEQQRRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDLYD 62

Query: 64  DKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVN-EDDGLLK-- 123
           DKD  RK+E+ A+     SG N F+ FY+RLK+I+E+HR+HP    V ++ E + LLK  
Sbjct: 63  DKDGLRKEELNAI-----SGPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKAR 122

Query: 124 ----EEPQ--IEFSGEEAFGRYLDLHELYNQYINSKFGEPIEYSSYLDVFSQPQKIPRKL 183
               EE Q  +EF+ EE +GRYLDLH+ Y +YIN K  E ++Y +YL +F Q   IP++ 
Sbjct: 123 ENPSEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQLFDIPKER 182

Query: 184 KISRQYREYMENLLAYLIYFFQRTEPLQDLDRIFSKGESEFEERWVTGTIEGW-ENTSKD 243
           K + +Y+ Y+E LL YL  +  R +PLQD + +F K +++FE++W  GT  GW + TS  
Sbjct: 183 K-NAEYKRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQTDFEKKWDNGTFPGWPKETSSA 242

Query: 244 DGHDTDLLNLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPL 303
             H    L   DL  +S+ EEL  LG +RLK  L ALGLK GGT+++RA+RLF TK   L
Sbjct: 243 LTHAGAHL---DLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKGKSL 302

Query: 304 QLLDKKHFAKVSREPIQNGAAATSLHDENLKQVALMEAKIEKLCDLLDETIARTKDNIVK 363
           + LD   FAK    P   G   T    E  K +A +EA+I +  ++L E    T +N+ +
Sbjct: 303 ESLDTSLFAK---NPKSKG---TKRDTERNKDIAFLEAQIYEYVEILGEQRQLTHENVQR 362

Query: 364 KQALTYEEIEAEREEEETQAESESDDEEQQ-IYNPLKLPMGWDGKPIPYWLYKLHGLGQE 423
           KQA T E  E E EEEE  +ESES+DEE + IYNP  LP+GWDGKPIPYWLYKLHGL   
Sbjct: 363 KQARTGE--EREEEEEEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNIN 422

Query: 424 FKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQER 483
           + CEICGNY+Y G +AF+RHF EWRH HGMRCLGIPNT +F  +T IE+A  LW +++ +
Sbjct: 423 YNCEICGNYTYRGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQ 482

Query: 484 QGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI 509
           +   +W+PD EEEYED  GN+ NKKTY DL+RQGL+
Sbjct: 483 KASERWQPDTEEEYEDSSGNVVNKKTYEDLKRQGLL 501

[Close]

BLAST of MS000488 vs. ExPASy Swiss-Prot
Match: O46106 (Splicing factor 3A subunit 3 OS=Drosophila melanogaster OX=7227 GN=noi PE=1 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 3.6e-107
Identity = 225/514 (43.77%), Postives = 326/514 (63.42%), Query Frame = 0


Query: 4   TLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYE 63
           TLLE  R  HEE ERL +L+V E   +    K+R+   HR++ +++   ++T +L ++YE
Sbjct: 3   TLLEQQRRLHEERERLVKLMVDEHATKKPGEKERIHSEHRLKYLMELHHNSTSQLRDLYE 62

Query: 64  DKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVN-EDDGLLK-- 123
           DKD+ RK EIAAL     SG N F+ FY RLK+I+++++ HPA   V ++ E D +++  
Sbjct: 63  DKDNERKAEIAAL-----SGPNEFNEFYARLKQIKQFYKSHPAEVSVPLSVEFDEMIRVY 122

Query: 124 EEPQ-----IEFSGEEAFGRYLDLHELYNQYINSKFGEPIEYSSYLDVFSQPQKIPRKLK 183
             P      +EF+ EE  GRYLDL+E Y  Y+N +  E ++Y +YL  F     IPR+ K
Sbjct: 123 NNPDDMSALVEFTDEEGGGRYLDLNECYELYLNLRSVEKLDYITYLMSFDHVFDIPRERK 182

Query: 184 ISRQYREYMENLLAYLIYFFQRTEPLQDLDRIFSKGESEFEERWVTGTIEGWENTSKDDG 243
            +R+YR Y+E L  YL +F  R +PL DL+    K E +F+ +W+ GT  G+     +  
Sbjct: 183 -NREYRIYIETLNDYLHHFILRIQPLLDLEGELLKVELDFQRQWLMGTFPGFSIKETESA 242

Query: 244 HDTDLLNLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQL 303
                 +L DL  +S+ EEL  LG +RLK  L ALGLK GGT+++RA+RLF TK      
Sbjct: 243 LANTGAHL-DLSAFSSWEELASLGLDRLKSALVALGLKCGGTLEERAQRLFSTKGK--ST 302

Query: 304 LDKKHFAKVSREPIQNGAAATSLHDENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQ 363
           LD    A ++++P    A+A S   E  K++A +EA + K  DLL E  A TK+N+ +KQ
Sbjct: 303 LDP---ALMAKKPSAKTASAQSREHERHKEIAQLEALLYKYADLLSEQRAATKENVQRKQ 362

Query: 364 ALTYEEIEAEREEEETQAESESDDEEQQI-YNPLKLPMGWDGKPIPYWLYKLHGLGQEFK 423
           A T  E + + + E +++++E D +   + YNP  LP+GWDGKPIPYWLYKLHGL   + 
Sbjct: 363 ARTGGERD-DSDVEASESDNEDDPDADDVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYN 422

Query: 424 CEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQG 483
           CEICGN++Y G +AF+RHF EWRH HGMRCLGIPNT +F  +T IE+A  LW++++ ++ 
Sbjct: 423 CEICGNFTYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAITLWEKLKSQKQ 482

Query: 484 VNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI 509
             +W  D EEE+ED  GN+ N+KT+ DL+RQGL+
Sbjct: 483 SERWVADQEEEFEDSLGNVVNRKTFEDLKRQGLL 503

[Close]

BLAST of MS000488 vs. ExPASy Swiss-Prot
Match: O59706 (Pre-mRNA-splicing factor sap61 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sap61 PE=1 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.1e-76
Identity = 183/532 (34.40%), Postives = 289/532 (54.32%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVE 60
           MS ++LE  R +HEE+ERL++ IV      P + ++RL   H+    ++    T++KL+ 
Sbjct: 1   MSESVLETERYAHEELERLQQAIVDRQVANPKAPRERLRLEHQSAQFLNQFRETSKKLLV 60

Query: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120
            +E  D  +  E+A +     +  +  + FY  L EI+E+H+++P  +V D+++   +  
Sbjct: 61  SHESSDRLKDQEVARI-----NADDDLTEFYKSLGEIQEFHKKYPDHKVEDLSQLYSIKP 120

Query: 121 EEPQIE-----FSGEEAFGRYLDLHELYNQYINSKFGEPIEYSSYLDVFSQPQKIPRKLK 180
            +P I+     F GEE +GR++DL+E Y +YIN    + I Y  YL       +IP+  K
Sbjct: 121 SQPGIDEIDTLFRGEEMYGRFMDLNECYEEYINLSNVQHISYLEYLKNLEDFDQIPKPEK 180

Query: 181 ISRQYREYMENLLAYLIYFFQRTEPLQDLDRIFSKGESEFEERWVTGTIEGWENTSKDDG 240
            ++ Y  Y+ +L  YL+ F++RT PL +LD+I +  ++EF+  W  G + GW        
Sbjct: 181 -NQTYINYITHLYEYLVSFYRRTHPLSNLDKIIAVFDTEFDAAWEAG-LPGW-------- 240

Query: 241 HDTDLLNLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQL 300
                        YS   E  + G +  +     +  K            F  K T  + 
Sbjct: 241 -------------YSHNAEAEKDGKDSTEAFYCEVCQK------------FFGKITVFEA 300

Query: 301 LDKKHFAKVSREPIQNGAAATSLH----DENLKQVALMEAKIEKLCDLLDETIARTKDNI 360
             K      + + +Q+ + +T+ +     +  K +A +E  I+KL  LLD+    T++N+
Sbjct: 301 HKKSKAHNKAVKRMQSSSPSTTSNTNEKQKGPKAIARIEFLIKKLTSLLDDVRKDTRENV 360

Query: 361 VKKQALTYEEIEAEREEEETQA--------------ESESD-DEEQQIYNPLKLPMGWDG 420
           V++Q LT  E  AE E  E +A              + ESD D+E++IYNPLKLP+GWDG
Sbjct: 361 VRRQTLTAAERLAEVEAAEREAFEQSTPSVSVEGNQDEESDQDDEEKIYNPLKLPLGWDG 420

Query: 421 KPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEI 480
           KPIP+WL+KLHGLG+EF CEICGNY Y GR+AF++HF E RH +G++CLGI  +  FN+I
Sbjct: 421 KPIPFWLWKLHGLGKEFPCEICGNYVYMGRKAFDKHFTEQRHIYGLKCLGISPSPLFNQI 480

Query: 481 TSIEEAKDLWKRIQERQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI 509
           TSI+EA  LW++ +      +       E ED EGN+ ++K Y DL+ QGL+
Sbjct: 481 TSIDEALQLWQKYKVDSKKRETTMASLNEMEDDEGNVMSEKVYNDLKAQGLL 492

[Close]

BLAST of MS000488 vs. ExPASy TrEMBL
Match: A0A6J1CJ06 (splicing factor SF3a60 homolog OS=Momordica charantia OX=3673 GN=LOC111011434 PE=3 SV=1)

HSP 1 Score: 1010.4 bits (2611), Expect = 2.7e-291
Identity = 507/508 (99.80%), Postives = 507/508 (99.80%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVE 60
           MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVE
Sbjct: 1   MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVE 60

Query: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120
           IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK
Sbjct: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120

Query: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEPIEYSSYLDVFSQPQKIPRKLKISRQY 180
           EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEPIEYSSYLDVFSQPQKIPRKLKISRQY
Sbjct: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEPIEYSSYLDVFSQPQKIPRKLKISRQY 180

Query: 181 REYMENLLAYLIYFFQRTEPLQDLDRIFSKGESEFEERWVTGTIEGWENTSKDDGHDTDL 240
           REYMENLLAYLIYFFQRTEPLQDLDRIFSKGESEFEERWVTGTIEGWENTSKDDGHDTD 
Sbjct: 181 REYMENLLAYLIYFFQRTEPLQDLDRIFSKGESEFEERWVTGTIEGWENTSKDDGHDTDP 240

Query: 241 LNLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300
           LNLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH
Sbjct: 241 LNLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300

Query: 301 FAKVSREPIQNGAAATSLHDENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360
           FAKVSREPIQNGAAATSLHDENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE
Sbjct: 301 FAKVSREPIQNGAAATSLHDENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360

Query: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420
           EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN
Sbjct: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420

Query: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480
           YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP
Sbjct: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480

Query: 481 DLEEEYEDKEGNIYNKKTYTDLQRQGLI 509
           DLEEEYEDKEGNIYNKKTYTDLQRQGLI
Sbjct: 481 DLEEEYEDKEGNIYNKKTYTDLQRQGLI 508

[Close]

BLAST of MS000488 vs. ExPASy TrEMBL
Match: A0A0A0LDU3 (Matrin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G603040 PE=3 SV=1)

HSP 1 Score: 961.1 bits (2483), Expect = 1.9e-276
Identity = 482/508 (94.88%), Postives = 496/508 (97.64%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVE 60
           MSSTLLEVTR+SHEEVERLERLIVKELQNEPASGKDRLLQSHRVR+MIDTIMSTTEKLVE
Sbjct: 1   MSSTLLEVTRSSHEEVERLERLIVKELQNEPASGKDRLLQSHRVRSMIDTIMSTTEKLVE 60

Query: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120
           IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDV+EDDGLLK
Sbjct: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVSEDDGLLK 120

Query: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEPIEYSSYLDVFSQPQKIPRKLKISRQY 180
           EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGE IEYSSYLDVFSQPQKI +KLK SRQY
Sbjct: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISQKLKFSRQY 180

Query: 181 REYMENLLAYLIYFFQRTEPLQDLDRIFSKGESEFEERWVTGTIEGWENTSKDDGHDTDL 240
           REY+ENLLAYLIYFFQRTEPLQDLDRIFSK ESEFEERWV GTIEGWENTS+D+GHD+  
Sbjct: 181 REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWVIGTIEGWENTSQDNGHDSAQ 240

Query: 241 LNLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300
            +LIDLDYYSTVEELVELGPERLKEGL ALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH
Sbjct: 241 HSLIDLDYYSTVEELVELGPERLKEGLMALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300

Query: 301 FAKVSREPIQNGAAATSLHDENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360
           FAK+SR+PIQNG+A  S ++ENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE
Sbjct: 301 FAKLSRQPIQNGSAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360

Query: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420
           EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN
Sbjct: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420

Query: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480
           YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP
Sbjct: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480

Query: 481 DLEEEYEDKEGNIYNKKTYTDLQRQGLI 509
           DLEEEYEDKEGNIYNKKTYTDLQRQGLI
Sbjct: 481 DLEEEYEDKEGNIYNKKTYTDLQRQGLI 508

[Close]

BLAST of MS000488 vs. ExPASy TrEMBL
Match: A0A5D3E065 (Splicing factor 3A subunit 3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G003640 PE=3 SV=1)

HSP 1 Score: 960.3 bits (2481), Expect = 3.2e-276
Identity = 480/508 (94.49%), Postives = 495/508 (97.44%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVE 60
           MSSTLLEVTR+SHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKL+E
Sbjct: 1   MSSTLLEVTRSSHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLIE 60

Query: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120
           IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDV+EDDGLLK
Sbjct: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVSEDDGLLK 120

Query: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEPIEYSSYLDVFSQPQKIPRKLKISRQY 180
           EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGE IEYSSYLD+FSQPQKI +KLK SRQY
Sbjct: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDIFSQPQKISQKLKFSRQY 180

Query: 181 REYMENLLAYLIYFFQRTEPLQDLDRIFSKGESEFEERWVTGTIEGWENTSKDDGHDTDL 240
           REY+ENLLAYLIYFFQRTEPLQDLDRIFSK ESEFEERW  GTIEGWENTS+D+GHD+  
Sbjct: 181 REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWAIGTIEGWENTSQDNGHDSAQ 240

Query: 241 LNLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300
            +LIDLDYYS+VEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH
Sbjct: 241 HSLIDLDYYSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300

Query: 301 FAKVSREPIQNGAAATSLHDENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360
           FAK+SR+PIQNG A  S ++ENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE
Sbjct: 301 FAKLSRQPIQNGMAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360

Query: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420
           EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN
Sbjct: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420

Query: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480
           YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP
Sbjct: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480

Query: 481 DLEEEYEDKEGNIYNKKTYTDLQRQGLI 509
           DLEEEYEDKEGNIYNKKTYTDLQRQGLI
Sbjct: 481 DLEEEYEDKEGNIYNKKTYTDLQRQGLI 508

[Close]

BLAST of MS000488 vs. ExPASy TrEMBL
Match: A0A5A7U5F1 (Splicing factor 3A subunit 3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G001400 PE=3 SV=1)

HSP 1 Score: 957.2 bits (2473), Expect = 2.7e-275
Identity = 479/508 (94.29%), Postives = 494/508 (97.24%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVE 60
           MSSTLLEVTR+SHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKL+E
Sbjct: 1   MSSTLLEVTRSSHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLIE 60

Query: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120
           IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDV+EDDGLLK
Sbjct: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVSEDDGLLK 120

Query: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEPIEYSSYLDVFSQPQKIPRKLKISRQY 180
           EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGE IEYSSYLD+FSQPQKI +KLK SRQY
Sbjct: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDIFSQPQKISQKLKFSRQY 180

Query: 181 REYMENLLAYLIYFFQRTEPLQDLDRIFSKGESEFEERWVTGTIEGWENTSKDDGHDTDL 240
           REY+ENLLAYLIYFFQRTEPLQDLDRIFSK ESEFEERW  GTIEGWENTS+D+GHD+  
Sbjct: 181 REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWAIGTIEGWENTSQDNGHDSAQ 240

Query: 241 LNLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300
            +LIDLDYYS+VEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH
Sbjct: 241 HSLIDLDYYSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300

Query: 301 FAKVSREPIQNGAAATSLHDENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360
           FAK+SR+PIQN  A  S ++ENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE
Sbjct: 301 FAKLSRQPIQNWMAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360

Query: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420
           EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN
Sbjct: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420

Query: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480
           YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP
Sbjct: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480

Query: 481 DLEEEYEDKEGNIYNKKTYTDLQRQGLI 509
           DLEEEYEDKEGNIYNKKTYTDLQRQGLI
Sbjct: 481 DLEEEYEDKEGNIYNKKTYTDLQRQGLI 508

[Close]

BLAST of MS000488 vs. ExPASy TrEMBL
Match: A0A1S3CTD5 (splicing factor 3A subunit 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504129 PE=3 SV=1)

HSP 1 Score: 957.2 bits (2473), Expect = 2.7e-275
Identity = 479/508 (94.29%), Postives = 494/508 (97.24%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVE 60
           MSSTLLEVTR+SHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKL+E
Sbjct: 1   MSSTLLEVTRSSHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLIE 60

Query: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120
           IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDV+EDDGLLK
Sbjct: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVSEDDGLLK 120

Query: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEPIEYSSYLDVFSQPQKIPRKLKISRQY 180
           EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGE IEYSSYLD+FSQPQKI +KLK SRQY
Sbjct: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDIFSQPQKISQKLKFSRQY 180

Query: 181 REYMENLLAYLIYFFQRTEPLQDLDRIFSKGESEFEERWVTGTIEGWENTSKDDGHDTDL 240
           REY+ENLLAYLIYFFQRTEPLQDLDRIFSK ESEFEERW  GTIEGWENTS+D+GHD+  
Sbjct: 181 REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWAIGTIEGWENTSQDNGHDSAQ 240

Query: 241 LNLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300
            +LIDLDYYS+VEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH
Sbjct: 241 HSLIDLDYYSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300

Query: 301 FAKVSREPIQNGAAATSLHDENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360
           FAK+SR+PIQN  A  S ++ENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE
Sbjct: 301 FAKLSRQPIQNWMAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360

Query: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420
           EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN
Sbjct: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420

Query: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480
           YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP
Sbjct: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480

Query: 481 DLEEEYEDKEGNIYNKKTYTDLQRQGLI 509
           DLEEEYEDKEGNIYNKKTYTDLQRQGLI
Sbjct: 481 DLEEEYEDKEGNIYNKKTYTDLQRQGLI 508

[Close]

BLAST of MS000488 vs. TAIR 10
Match: AT5G06160.1 (splicing factor-related )

HSP 1 Score: 778.9 bits (2010), Expect = 2.6e-225
Identity = 389/509 (76.42%), Postives = 437/509 (85.85%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVE 60
           MSSTLLE TR++HEEVERLERL+V++LQ EP S KDRL+Q HRVR+MI++IM TTEKLVE
Sbjct: 1   MSSTLLEQTRSNHEEVERLERLVVEDLQKEPPSSKDRLVQGHRVRHMIESIMLTTEKLVE 60

Query: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNED-DGLL 120
            YEDKD A  DEIAALGGQT +GTNVFS FYDRLKEIREYH+RHP+ R+VD NED +  L
Sbjct: 61  TYEDKDGAWDDEIAALGGQTATGTNVFSEFYDRLKEIREYHKRHPSGRLVDANEDYEARL 120

Query: 121 KEEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEPIEYSSYLDVFSQPQKIPRKLKISRQ 180
           KEEP I FSGEE  GRYLDLH++YNQYINSKFGE +EYS+YLDVFSQP+KIPRKLK+SRQ
Sbjct: 121 KEEPIIAFSGEEGNGRYLDLHDMYNQYINSKFGERVEYSAYLDVFSQPEKIPRKLKLSRQ 180

Query: 181 YREYMENLLAYLIYFFQRTEPLQDLDRIFSKGESEFEERWVTGTIEGWENTSKDDGHDTD 240
           Y +YME LL YL+YFFQRTEPLQDLDRI SK  S+FEE++  G +EG +N      H   
Sbjct: 181 YMKYMEALLEYLVYFFQRTEPLQDLDRILSKVCSDFEEQYADGIVEGLDNELIPSQH--- 240

Query: 241 LLNLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKK 300
              +IDLDYYSTVEELV++GPE+LKE L ALGLK GGT QQRAERLFLTKHTPL+ LDKK
Sbjct: 241 --TVIDLDYYSTVEELVDVGPEKLKEALGALGLKVGGTPQQRAERLFLTKHTPLEKLDKK 300

Query: 301 HFAKVSREPIQNGAAATSLHDENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTY 360
           HFA+      QNG A ++   EN K++AL EAK++KLC+LLDETI RTK NIVKKQ+LTY
Sbjct: 301 HFARPPHNGKQNGDAKSTHESENAKEIALTEAKVKKLCNLLDETIERTKQNIVKKQSLTY 360

Query: 361 EEIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICG 420
           EE+E ERE EE   E ESDDE+  IYNPLKLP+GWDGKPIPYWLYKLHGLGQEFKCEICG
Sbjct: 361 EEMEGEREGEEANTELESDDEDGLIYNPLKLPIGWDGKPIPYWLYKLHGLGQEFKCEICG 420

Query: 421 NYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWR 480
           NYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAK+LWKRIQERQGVNKWR
Sbjct: 421 NYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKRIQERQGVNKWR 480

Query: 481 PDLEEEYEDKEGNIYNKKTYTDLQRQGLI 509
           P+LEEEYED+EGNIYNKKTY+DLQRQGLI
Sbjct: 481 PELEEEYEDREGNIYNKKTYSDLQRQGLI 504

[Close]

BLAST of MS000488 vs. TAIR 10
Match: AT4G01000.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 55.5 bits (132), Expect = 1.5e-07
Identity = 29/60 (48.33%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 244 IDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKHFAK 303
           ++ D +++  ++  LG ERLK  L + GLK GGT+++RA RLFL K TPL  L KK  AK
Sbjct: 355 LNFDDFNSPADMEVLGMERLKTELQSRGLKCGGTLRERAARLFLLKSTPLDKLPKKLLAK 414

[Close]

BLAST of MS000488 vs. TAIR 10
Match: AT3G06455.1 (ubiquitin family protein )

HSP 1 Score: 50.1 bits (118), Expect = 6.3e-06
Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 0


Query: 249 YSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKHFAK 304
           +    ++  LG ERLK  L + GLK  GT+++RA RLFL K TPL  L KK  AK
Sbjct: 290 FKAATDMEVLGMERLKTELQSRGLKCRGTLRERAARLFLLKSTPLDKLPKKLLAK 344

The following BLAST results are available for this feature:

BLAST of MS000488 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140873.1	5.6e-291	99.80	splicing factor SF3a60 homolog [Momordica charantia]	[more]
XP_038875231.1	2.3e-276	94.88	splicing factor SF3a60 homolog [Benincasa hispida]	[more]
XP_011651597.1	3.9e-276	94.88	splicing factor SF3a60 homolog [Cucumis sativus] >KGN58266.1 hypothetical protei...	[more]
TYK29174.1	6.6e-276	94.49	splicing factor 3A subunit 3 isoform X1 [Cucumis melo var. makuwa]	[more]
XP_008466807.1	5.6e-275	94.29	PREDICTED: splicing factor 3A subunit 3 isoform X1 [Cucumis melo] >KAA0050498.1 ...	[more]

BLAST of MS000488 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FG01	3.6e-224	76.42	Splicing factor SF3a60 homolog OS=Arabidopsis thaliana OX=3702 GN=ATO PE=1 SV=1	[more]
Q12874	1.2e-121	47.87	Splicing factor 3A subunit 3 OS=Homo sapiens OX=9606 GN=SF3A3 PE=1 SV=1	[more]
Q9D554	2.6e-121	47.67	Splicing factor 3A subunit 3 OS=Mus musculus OX=10090 GN=Sf3a3 PE=1 SV=2	[more]
O46106	3.6e-107	43.77	Splicing factor 3A subunit 3 OS=Drosophila melanogaster OX=7227 GN=noi PE=1 SV=1	[more]
O59706	1.1e-76	34.40	Pre-mRNA-splicing factor sap61 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]

BLAST of MS000488 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CJ06	2.7e-291	99.80	splicing factor SF3a60 homolog OS=Momordica charantia OX=3673 GN=LOC111011434 PE...	[more]
A0A0A0LDU3	1.9e-276	94.88	Matrin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G603040...	[more]
A0A5D3E065	3.2e-276	94.49	Splicing factor 3A subunit 3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7U5F1	2.7e-275	94.29	Splicing factor 3A subunit 3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3CTD5	2.7e-275	94.29	splicing factor 3A subunit 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504129 ...	[more]

BLAST of MS000488 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06160.1	2.6e-225	76.42	splicing factor-related	[more]
AT4G01000.1	1.5e-07	48.33	Ubiquitin-like superfamily protein	[more]
AT3G06455.1	6.3e-06	49.09	ubiquitin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 352..379
None	No IPR available	PFAM	PF13297	Telomere_Sde2_2	coord: 244..303 e-value: 9.7E-26 score: 89.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 362..381
None	No IPR available	PANTHER	PTHR12786	SPLICING FACTOR SF3A-RELATED	coord: 1..508
None	No IPR available	PANTHER	PTHR12786:SF6	BNAA03G01920D PROTEIN	coord: 1..508
IPR021966	Splicing factor SF3a60 binding domain	PFAM	PF12108	SF3a60_bindingd	coord: 80..105 e-value: 4.1E-13 score: 49.0
IPR031774	SF3A3 domain	PFAM	PF16837	SF3A3	coord: 126..205 e-value: 2.0E-24 score: 85.8
IPR024598	Splicing factor SF3a60 subunit C-terminal	PFAM	PF11931	DUF3449	coord: 329..507 e-value: 1.2E-76 score: 256.7
IPR000690	Matrin/U1-C, C2H2-type zinc finger	PROSITE	PS50171	ZF_MATRIN	coord: 413..444 score: 9.357525

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000488.1	MS000488.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding