MS000484 (gene) Bitter gourd (TR) v1

Overview


Name	MS000484
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RING-type domain-containing protein
Location	scaffold44: 1998650 .. 2000272 (-)
RNA-Seq Expression	MS000484
Synteny	MS000484

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCTTTGTCTCCTCTTGCTCTGTTTCTTCACCCCTGCAATAAGCAGCTCTGGATTGTGCTTCGACACCCGCTGCCAAGGCGATGATCAGACCATTCGATTTCCCTTCAGGATTGAAAACAGGCAGCCCAGTTCATGTGGGTATCCTGGTTTCGACTTGTCCTGCCACGCCACGGCCCAACCACGCCTTCATCTTCCTCCTTCTGGGAATTTCAGCGTCCAATTCATAGATTATCAGAACCAAGAAATATGGGTCAATGACCCAAACGGCTGTCTTCCCGGAAAAATTCTGTCGCTCAATCTTTCTGGGTCGCCGTTCGCCGGAAAGTACACTCAAGATTTTACTTTCTTCAACTGCTCGGCGAAGGTTCGGTTGCCGTATGGGTTGAACTTGAATCCGATTTCGTGCCTGAGTGGCCTCTCGTACGCAGTCTTCGCTTCGTCGTCTCCGATGATTATAAACGATTTGTCGTCGAATTGCGTCGTGATGAAAAGCGTTTCGGTGCCGGTTTCATGGTCGTTCTCGTCGGACCTGAGGGACGATCTCCAATTGGCGTGGAAAAAGCCTGCTTGTGGAAGCTGTGAGTCACGTGGTGGACGATGTGAGCCCAACCCCAATTCAAGCAATCAAATCCAATGCACACCCATTACTCAACCTCAACCCAAACAAAGTAAGTTTCAAACTTCTCTTCTCTTCTTTTCTAGGTACAACATCTAGAACCGGAACTACGAACACTTAAATCTCAACCTTATAGTTGGATACATGTACCTTAATTCTTGGCTGAATTGTGCTTTGATTGGCTTCAGAACTTTCTTGAACAAGGTATTAAAACTCATAATTTTTTAACAGTAAATAAATATCTTAACTAATTGTAAAAGGTAAACATAACACTCTCCAACATCAAAATATACGAGTTATATGATACCTTTTATTTTTAGATAATGACCTATTGAACACTAATTTCAAATTGCTCAAAACAAATTTATTTTTTACTACGTATTATATATAAAATTTAGACGTACTCGATGGTTATTGGTGAAATCAAAAGAGAGACTAAACGGTAGATACCAAATAACCTTTTTTGGACATATATATCCTAATCGCTGATTTATCATTTTAATTTGGTAGTAAATTGAGTTATGGAAATTATTAATTATAATATAAGATGAGTAAGAAAGCTTTTTGATTACTGTTATGTTAGGGTTACCGAGAGGTGCTCGTTATGCTGTGGCTATAGGGGTGGGAGTGCCAGCAGGGTTGTGCTTTTTGGGCCTCTTATGTTGCTTTTGTGCCCGACTGAGATACTACTCCAGGCCCAGAGCACGCAGTTCCAGCATTGAAGCCCATTGGGTCATATCTTCTCAGCCCACAACTACGATGGGCCTAGATGGGCCGACCATAGATTCCTACCCAAAATTTGTATTGGGCCAAAGCCTACGACTACCGGAGCCCAATGGCAGCATCTGCCCAATTTGCCTGTCCGAATATCGGCCCAAAGAGATCGTGAAGACCATACCCGACTGCCAACATTGCTTCCATCAAGATTGTATTGATGAATGGCTGCGATTGAATGCCTCCTGCCCTTTCTGCAGGAAACCTCCCATCAAATCTCTCTCCGATCCT

mRNA sequence

ATTCTTTGTCTCCTCTTGCTCTGTTTCTTCACCCCTGCAATAAGCAGCTCTGGATTGTGCTTCGACACCCGCTGCCAAGGCGATGATCAGACCATTCGATTTCCCTTCAGGATTGAAAACAGGCAGCCCAGTTCATGTGGGTATCCTGGTTTCGACTTGTCCTGCCACGCCACGGCCCAACCACGCCTTCATCTTCCTCCTTCTGGGAATTTCAGCGTCCAATTCATAGATTATCAGAACCAAGAAATATGGGTCAATGACCCAAACGGCTGTCTTCCCGGAAAAATTCTGTCGCTCAATCTTTCTGGGTCGCCGTTCGCCGGAAAGTACACTCAAGATTTTACTTTCTTCAACTGCTCGGCGAAGGTTCGGTTGCCGTATGGGTTGAACTTGAATCCGATTTCGTGCCTGAGTGGCCTCTCGTACGCAGTCTTCGCTTCGTCGTCTCCGATGATTATAAACGATTTGTCGTCGAATTGCGTCGTGATGAAAAGCGTTTCGGTGCCGGTTTCATGGTCGTTCTCGTCGGACCTGAGGGACGATCTCCAATTGGCGTGGAAAAAGCCTGCTTGTGGAAGCTGTGAGTCACGTGGTGGACGATGTGAGCCCAACCCCAATTCAAGCAATCAAATCCAATGCACACCCATTACTCAACCTCAACCCAAACAAAGGTTACCGAGAGGTGCTCGTTATGCTGTGGCTATAGGGGTGGGAGTGCCAGCAGGGTTGTGCTTTTTGGGCCTCTTATGTTGCTTTTGTGCCCGACTGAGATACTACTCCAGGCCCAGAGCACGCAGTTCCAGCATTGAAGCCCATTGGGTCATATCTTCTCAGCCCACAACTACGATGGGCCTAGATGGGCCGACCATAGATTCCTACCCAAAATTTGTATTGGGCCAAAGCCTACGACTACCGGAGCCCAATGGCAGCATCTGCCCAATTTGCCTGTCCGAATATCGGCCCAAAGAGATCGTGAAGACCATACCCGACTGCCAACATTGCTTCCATCAAGATTGTATTGATGAATGGCTGCGATTGAATGCCTCCTGCCCTTTCTGCAGGAAACCTCCCATCAAATCTCTCTCCGATCCT

Coding sequence (CDS)

ATTCTTTGTCTCCTCTTGCTCTGTTTCTTCACCCCTGCAATAAGCAGCTCTGGATTGTGCTTCGACACCCGCTGCCAAGGCGATGATCAGACCATTCGATTTCCCTTCAGGATTGAAAACAGGCAGCCCAGTTCATGTGGGTATCCTGGTTTCGACTTGTCCTGCCACGCCACGGCCCAACCACGCCTTCATCTTCCTCCTTCTGGGAATTTCAGCGTCCAATTCATAGATTATCAGAACCAAGAAATATGGGTCAATGACCCAAACGGCTGTCTTCCCGGAAAAATTCTGTCGCTCAATCTTTCTGGGTCGCCGTTCGCCGGAAAGTACACTCAAGATTTTACTTTCTTCAACTGCTCGGCGAAGGTTCGGTTGCCGTATGGGTTGAACTTGAATCCGATTTCGTGCCTGAGTGGCCTCTCGTACGCAGTCTTCGCTTCGTCGTCTCCGATGATTATAAACGATTTGTCGTCGAATTGCGTCGTGATGAAAAGCGTTTCGGTGCCGGTTTCATGGTCGTTCTCGTCGGACCTGAGGGACGATCTCCAATTGGCGTGGAAAAAGCCTGCTTGTGGAAGCTGTGAGTCACGTGGTGGACGATGTGAGCCCAACCCCAATTCAAGCAATCAAATCCAATGCACACCCATTACTCAACCTCAACCCAAACAAAGGTTACCGAGAGGTGCTCGTTATGCTGTGGCTATAGGGGTGGGAGTGCCAGCAGGGTTGTGCTTTTTGGGCCTCTTATGTTGCTTTTGTGCCCGACTGAGATACTACTCCAGGCCCAGAGCACGCAGTTCCAGCATTGAAGCCCATTGGGTCATATCTTCTCAGCCCACAACTACGATGGGCCTAGATGGGCCGACCATAGATTCCTACCCAAAATTTGTATTGGGCCAAAGCCTACGACTACCGGAGCCCAATGGCAGCATCTGCCCAATTTGCCTGTCCGAATATCGGCCCAAAGAGATCGTGAAGACCATACCCGACTGCCAACATTGCTTCCATCAAGATTGTATTGATGAATGGCTGCGATTGAATGCCTCCTGCCCTTTCTGCAGGAAACCTCCCATCAAATCTCTCTCCGATCCT

Protein sequence

ILCLLLLCFFTPAISSSGLCFDTRCQGDDQTIRFPFRIENRQPSSCGYPGFDLSCHATAQPRLHLPPSGNFSVQFIDYQNQEIWVNDPNGCLPGKILSLNLSGSPFAGKYTQDFTFFNCSAKVRLPYGLNLNPISCLSGLSYAVFASSSPMIINDLSSNCVVMKSVSVPVSWSFSSDLRDDLQLAWKKPACGSCESRGGRCEPNPNSSNQIQCTPITQPQPKQRLPRGARYAVAIGVGVPAGLCFLGLLCCFCARLRYYSRPRARSSSIEAHWVISSQPTTTMGLDGPTIDSYPKFVLGQSLRLPEPNGSICPICLSEYRPKEIVKTIPDCQHCFHQDCIDEWLRLNASCPFCRKPPIKSLSDP

Homology

[Close]

BLAST of MS000484 vs. NCBI nr
Match: XP_022141168.1 (putative RING-H2 finger protein ATL21A [Momordica charantia])

HSP 1 Score: 772.7 bits (1994), Expect = 1.4e-219
Identity = 363/364 (99.73%), Postives = 363/364 (99.73%), Query Frame = 0


Query: 1   ILCLLLLCFFTPAISSSGLCFDTRCQGDDQTIRFPFRIENRQPSSCGYPGFDLSCHATAQ 60
           ILCLLLLCFF PAISSSGLCFDTRCQGDDQTIRFPFRIENRQPSSCGYPGFDLSCHATAQ
Sbjct: 3   ILCLLLLCFFIPAISSSGLCFDTRCQGDDQTIRFPFRIENRQPSSCGYPGFDLSCHATAQ 62

Query: 61  PRLHLPPSGNFSVQFIDYQNQEIWVNDPNGCLPGKILSLNLSGSPFAGKYTQDFTFFNCS 120
           PRLHLPPSGNFSVQFIDYQNQEIWVNDPNGCLPGKILSLNLSGSPFAGKYTQDFTFFNCS
Sbjct: 63  PRLHLPPSGNFSVQFIDYQNQEIWVNDPNGCLPGKILSLNLSGSPFAGKYTQDFTFFNCS 122

Query: 121 AKVRLPYGLNLNPISCLSGLSYAVFASSSPMIINDLSSNCVVMKSVSVPVSWSFSSDLRD 180
           AKVRLPYGLNLNPISCLSGLSYAVFASSSPMIINDLSSNCVVMKSVSVPVSWSFSSDLRD
Sbjct: 123 AKVRLPYGLNLNPISCLSGLSYAVFASSSPMIINDLSSNCVVMKSVSVPVSWSFSSDLRD 182

Query: 181 DLQLAWKKPACGSCESRGGRCEPNPNSSNQIQCTPITQPQPKQRLPRGARYAVAIGVGVP 240
           DLQLAWKKPACGSCESRGGRCEPNPNSSNQIQCTPITQPQPKQRLPRGARYAVAIGVGVP
Sbjct: 183 DLQLAWKKPACGSCESRGGRCEPNPNSSNQIQCTPITQPQPKQRLPRGARYAVAIGVGVP 242

Query: 241 AGLCFLGLLCCFCARLRYYSRPRARSSSIEAHWVISSQPTTTMGLDGPTIDSYPKFVLGQ 300
           AGLCFLGLLCCFCARLRYYSRPRARSSSIEAHWVISSQPTTTMGLDGPTIDSYPKFVLGQ
Sbjct: 243 AGLCFLGLLCCFCARLRYYSRPRARSSSIEAHWVISSQPTTTMGLDGPTIDSYPKFVLGQ 302

Query: 301 SLRLPEPNGSICPICLSEYRPKEIVKTIPDCQHCFHQDCIDEWLRLNASCPFCRKPPIKS 360
           SLRLPEPNGSICPICLSEYRPKEIVKTIPDCQHCFHQDCIDEWLRLNASCPFCRKPPIKS
Sbjct: 303 SLRLPEPNGSICPICLSEYRPKEIVKTIPDCQHCFHQDCIDEWLRLNASCPFCRKPPIKS 362

Query: 361 LSDP 365
           LSDP
Sbjct: 363 LSDP 366

[Close]

BLAST of MS000484 vs. NCBI nr
Match: XP_038905493.1 (RING-H2 finger protein ATL20-like [Benincasa hispida])

HSP 1 Score: 514.6 bits (1324), Expect = 6.9e-142
Identity = 250/358 (69.83%), Postives = 283/358 (79.05%), Query Frame = 0


Query: 2   LCLL-LLCFFTPAISSSGLCFDTRCQGDDQTIRFPFRIENRQPSSCGYPGFDLSCHATAQ 61
           LC L  LCFF  A ++S LCF + C GD QTIRFPFRIEN+QP SCGYPGFDL+CH+T Q
Sbjct: 11  LCFLCFLCFFNLA-TTSELCFGSTCNGDFQTIRFPFRIENQQPKSCGYPGFDLTCHSTGQ 70

Query: 62  PRLHLPPSGNFSVQFIDYQNQEIWVNDPNGCLPGKILSLNLSGSPFAGKYTQDFTFFNCS 121
           P LHLP SG F V++IDYQNQEIWVNDPN CLP KILSL L GSPF  K ++DFTFFNCS
Sbjct: 71  PLLHLPFSGEFIVEYIDYQNQEIWVNDPNNCLPRKILSLMLFGSPFETKNSEDFTFFNCS 130

Query: 122 AKVRLPYGLNLNPISCLSGLSYAVFASSSPMIINDLSSNCVVMKSVSVPVSWSFSSDLRD 181
               +PY  NLNPISCLSGLSY VFAS+SP++   LSS CV++K+VSVP S  F  DLR+
Sbjct: 131 GSDEIPYDFNLNPISCLSGLSYTVFASASPIVNEILSSRCVLVKTVSVPNSGLFPWDLRN 190

Query: 182 DLQLAWKKPACGSCESRGGRCEPNPNSSNQIQCTPITQPQPKQRLPRGARYAVAIGVGVP 241
           DL+L WKKP C  CES GG C   PNS+N+I C   T  Q ++ +PRGARYAV+IGVGVP
Sbjct: 191 DLRLVWKKPNCRKCESNGGVCGIKPNSTNEILCKYST--QTRRGMPRGARYAVSIGVGVP 250

Query: 242 AGLCFLGLLCCFCARLRYYSRPRARSSSIEAHWVISSQPTTTMGLDGPTIDSYPKFVLGQ 301
           A +C LG LCCFCAR+R  S  R R+SSIEAHWVISS+P T MGLDGPTIDSYPK VLG+
Sbjct: 251 ASMCILGFLCCFCARVR--SSTRGRNSSIEAHWVISSRP-TLMGLDGPTIDSYPKIVLGE 310

Query: 302 SLRLPEPNGSICPICLSEYRPKEIVKTIPDCQHCFHQDCIDEWLRLNASCPFCRKPPI 359
           SLRLP PN +ICPICLSEYRPKE VK+IP CQH FHQDCIDEWLRLNASCP CR PP+
Sbjct: 311 SLRLPRPNDNICPICLSEYRPKETVKSIPQCQHFFHQDCIDEWLRLNASCPVCRMPPL 362

[Close]

BLAST of MS000484 vs. NCBI nr
Match: XP_023553169.1 (RING-H2 finger protein ATL22-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 511.9 bits (1317), Expect = 4.5e-141
Identity = 250/361 (69.25%), Postives = 286/361 (79.22%), Query Frame = 0


Query: 1   ILCLL-LLCFFTPAISSSGLCFDTRCQGDDQTIRFPFRIENRQPSSCGYPGFDLSCHATA 60
           +LCL+  LC F+PA S+S LCF + C GD QTI+FPFRIEN+QP SCGYPGFDL+C +T 
Sbjct: 7   LLCLVCFLCLFSPA-STSELCFHSSCDGDFQTIQFPFRIENQQPKSCGYPGFDLTCPSTG 66

Query: 61  QPRLHLPPSGNFSVQFIDYQNQEIWVNDPNGCLPGKILSLNLSGSPFAGKYTQDFTFFNC 120
           QP LHLP SG+F+VQ+IDY+NQEI VNDPN CLP KILSL LSGSPF G  ++DFTFFNC
Sbjct: 67  QPLLHLPSSGDFTVQYIDYENQEILVNDPNKCLPRKILSLELSGSPFHGTNSEDFTFFNC 126

Query: 121 SAKVRLPYGLNLNPISCLSGLSYAVFASSSPMIINDLSSNCVVMKSVSVPVSWSFSSDLR 180
           S    +P   NLNPI CLSGLSYAVFAS S  +   LSS+CV MK+VSVP SWSFS+DL 
Sbjct: 127 SWSDPIPSEFNLNPIYCLSGLSYAVFASPSSFVNEILSSSCVAMKTVSVPYSWSFSTDLT 186

Query: 181 DDLQLAWKKPACGSCESRGGRCEPNPNSSNQIQCTPITQPQPKQRLPRGARYAVAIGVGV 240
           +DL+L WKKP C  CES GG C   PNS++QIQC      QP+  +PRGARYAV+IGVGV
Sbjct: 187 NDLRLGWKKPNCRRCESHGGICGLKPNSTDQIQCK--HSAQPRHGIPRGARYAVSIGVGV 246

Query: 241 PAGLCFLGLLCCFCARLRYYSRPRARSSSIEAHWVISSQPTTTMGLDGPTIDSYPKFVLG 300
           PA +C LG LCCFCAR+R YS  R R+SSIEAHWVISS+P T MGLD PTIDSYPK  LG
Sbjct: 247 PATMCILGFLCCFCARVRSYS--RGRNSSIEAHWVISSRP-TLMGLDEPTIDSYPKIELG 306

Query: 301 QSLRLPEPNGSICPICLSEYRPKEIVKTIPDCQHCFHQDCIDEWLRLNASCPFCRKPPIK 360
           +SLRLP+PN +IC ICLSEYRPKE VK+IP CQH FHQDCIDEWLRLN SCP CR PP+K
Sbjct: 307 ESLRLPKPNDNICAICLSEYRPKETVKSIPQCQHFFHQDCIDEWLRLNPSCPVCRMPPVK 361

[Close]

BLAST of MS000484 vs. NCBI nr
Match: XP_022984777.1 (RING-H2 finger protein ATL22-like [Cucurbita maxima])

HSP 1 Score: 510.4 bits (1313), Expect = 1.3e-140
Identity = 250/360 (69.44%), Postives = 283/360 (78.61%), Query Frame = 0


Query: 2   LCLL-LLCFFTPAISSSGLCFDTRCQGDDQTIRFPFRIENRQPSSCGYPGFDLSCHATAQ 61
           LC L  LC F+PA S+S LCF + C GD QTI+FPFRIEN+QP SCGYPGFDL+C +T Q
Sbjct: 8   LCFLCFLCLFSPA-STSELCFHSSCNGDFQTIQFPFRIENQQPKSCGYPGFDLTCPSTGQ 67

Query: 62  PRLHLPPSGNFSVQFIDYQNQEIWVNDPNGCLPGKILSLNLSGSPFAGKYTQDFTFFNCS 121
           P LHLP SG+F+VQ+IDY+NQEI VNDPN CLP KILSL LSGSPF    ++DFT FNCS
Sbjct: 68  PLLHLPSSGDFTVQYIDYENQEILVNDPNKCLPRKILSLELSGSPFQATNSEDFTLFNCS 127

Query: 122 AKVRLPYGLNLNPISCLSGLSYAVFASSSPMIINDLSSNCVVMKSVSVPVSWSFSSDLRD 181
               +P  LNLNPI CLSGLSYAVFAS S  +   LSS CV MK+VSVP SWSFS DL +
Sbjct: 128 WSDPIPSELNLNPIYCLSGLSYAVFASPSSFVNEILSSRCVAMKTVSVPYSWSFSPDLTN 187

Query: 182 DLQLAWKKPACGSCESRGGRCEPNPNSSNQIQCTPITQPQPKQRLPRGARYAVAIGVGVP 241
           DL+L WKKP C  CES GG C   PNS++QIQC      QP+  +PRGARYAV+IGVGVP
Sbjct: 188 DLRLGWKKPNCRRCESHGGICGLEPNSTDQIQCK--HSAQPRHGIPRGARYAVSIGVGVP 247

Query: 242 AGLCFLGLLCCFCARLRYYSRPRARSSSIEAHWVISSQPTTTMGLDGPTIDSYPKFVLGQ 301
             +C LG LCCFCAR+R YS  R R+SSIEAHWVISS+P T MGLD PTIDSYPKF LG+
Sbjct: 248 VSMCVLGFLCCFCARVRSYS--RGRNSSIEAHWVISSRP-TLMGLDEPTIDSYPKFELGE 307

Query: 302 SLRLPEPNGSICPICLSEYRPKEIVKTIPDCQHCFHQDCIDEWLRLNASCPFCRKPPIKS 361
           SLRLP+PN +IC ICLSEYRPKEIVK+IP C+H FHQDCIDEWLRLNASCP CR PP+KS
Sbjct: 308 SLRLPKPNDNICAICLSEYRPKEIVKSIPHCRHFFHQDCIDEWLRLNASCPVCRMPPVKS 361

[Close]

BLAST of MS000484 vs. NCBI nr
Match: XP_022141098.1 (putative RING-H2 finger protein ATL21B [Momordica charantia])

HSP 1 Score: 506.5 bits (1303), Expect = 1.9e-139
Identity = 256/366 (69.95%), Postives = 288/366 (78.69%), Query Frame = 0


Query: 3   CLLLLCFFTPAISSSGLCFDTRCQGDDQTIRFPFRIENRQPSSCGYPGFDLSCHA----T 62
           CLLL CFF PA +SSG CF++RC GD QTIRFPFRIENRQP SCGYPGFDLSC A     
Sbjct: 9   CLLLCCFFNPA-TSSGFCFESRCGGDYQTIRFPFRIENRQPKSCGYPGFDLSCQAHPTGQ 68

Query: 63  AQPRLHLPPSGNFSVQFIDYQNQEIWVNDPNGCLPGKILSLNLSGSPFAGKYTQDFTFFN 122
            QP LHLPPSG+FSV++IDY+NQEIW+NDPN CL GKILSLNLSGSPF  K +QDFTFFN
Sbjct: 69  DQPLLHLPPSGDFSVKYIDYRNQEIWINDPNNCLAGKILSLNLSGSPFVAKNSQDFTFFN 128

Query: 123 CSAKVRLPYGLNLNPISCLSGLSYAVFASSSPMIINDLSSNCVVMKSVSVPVSWSFSSDL 182
           CSA    P  L ++PI CL   S+AVFASSSP  I+ LSSNCVV+K+VSVPVSWSF   L
Sbjct: 129 CSADYS-PSWL-IDPIYCLGSSSHAVFASSSPATIDILSSNCVVIKTVSVPVSWSFWPKL 188

Query: 183 RDDLQLAWKKPACGSCESRGGRCEPNPNSS--NQIQCTPITQPQPKQRLPRGARYAVAIG 242
            DDL L W+ PACGSCES GG CE  PNSS  ++IQCT I    P+   P  +  A+++ 
Sbjct: 189 WDDLLLRWENPACGSCESLGGGCELKPNSSSRHEIQCTNI----PQAATPSNSSSALSMA 248

Query: 243 VGVPAG-LCFLGLLCCFCARLRYYSRPRARSSSIEAHWVISSQPTTTMGLDGPTIDSYPK 302
           VGV A  LCFL LLCC CARLR  SRP  R+SS E HW +SSQPTTTMGLDGPTIDSYP 
Sbjct: 249 VGVVAAVLCFLILLCCLCARLR--SRP--RNSSPETHWTVSSQPTTTMGLDGPTIDSYPN 308

Query: 303 FVLGQSLRLPEPNGSICPICLSEYRPKEIVKTIPDCQHCFHQDCIDEWLRLNASCPFCRK 362
           FVLGQSLRLPEPN +ICPICLS+YRPKEI+K+IP+CQHCFHQ CI+EWLRLNASCP CRK
Sbjct: 309 FVLGQSLRLPEPNNNICPICLSQYRPKEILKSIPNCQHCFHQHCIEEWLRLNASCPVCRK 363

[Close]

BLAST of MS000484 vs. ExPASy Swiss-Prot
Match: P0CH01 (Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 3.8e-58
Identity = 136/375 (36.27%), Postives = 195/375 (52.00%), Query Frame = 0


Query: 5   LLLCFFTPAISSS--GLCFDTRCQGDDQTIRFPFRIENRQPSSCGYPGFDLSCHATAQPR 64
           L L F  P + +S    C  + C  DD  +RFPF + ++QP  CG+ GF+L C A+ +  
Sbjct: 9   LYLFFLFPLLHASHPQQCSSSSCGRDDVHVRFPFWLLSKQPELCGHAGFNLQCTASPKTA 68

Query: 65  LHLPPSGNFSVQFIDYQNQEIWVNDPNGCLPGKILSLNLSGSPFAGKYTQDFTFFNCSAK 124
           L LP SG F V+ IDY +Q+I + DP  CL  K+L+ ++S SPF+  Y   +TF +C  +
Sbjct: 69  LKLPNSGTFLVREIDYLSQQIRLYDPENCLARKLLTFDISRSPFSALYLVSYTFLSCPNE 128

Query: 125 VRLPYGLNLNPISCLSGLSYAVFASSSPMIINDLSSNCVVMKSVSVPVS-------WSFS 184
           V        + I CL   + +  A++S  +   +  +C ++K++ VPVS         FS
Sbjct: 129 V--AKSSRFDSIPCLGNSTTSFLATTSLDLAKSMLPSCQIVKTLDVPVSRRVIAKKSRFS 188

Query: 185 SDLRD-DLQLAWKKPACGSCESRGGRCEPNPNSSNQIQCTPI------TQPQPKQRLPRG 244
           +D+ D DL L W  P+C  CE    RC    N+S Q++C P       T+PQ  + +   
Sbjct: 189 TDVNDKDLWLKWDSPSCSDCERDFLRCGFRSNTSLQVKCFPFENSGYNTEPQVLKIILLS 248

Query: 245 -----ARYAVAIGVGVPAGLCFLGLLCCFCARLRYYSRPRARSSSIEAHWVISSQPTTTM 304
                  +A  I VGV           C   R     +     ++++ + VI      T 
Sbjct: 249 IIGPLTIFATCIAVGV-----------CTSERFASLIQRNVAIAALQPNEVI-----VTT 308

Query: 305 GLDGPTIDSYPKFVLGQSLRLPEPNGSI-CPICLSEYRPKEIVKTIPDCQHCFHQDCIDE 358
           GLD   I+SY K  LG+S RLP  N  I CPICLSEY  KE V+ IP+C HCFH +CID 
Sbjct: 309 GLDESIIESYKKTELGESRRLPGNNDDIVCPICLSEYASKETVRCIPECDHCFHSECIDV 365

[Close]

BLAST of MS000484 vs. ExPASy Swiss-Prot
Match: Q9SKK8 (RING-H2 finger protein ATL22 OS=Arabidopsis thaliana OX=3702 GN=ATL22 PE=2 SV=2)

HSP 1 Score: 216.9 bits (551), Expect = 3.9e-55
Identity = 129/371 (34.77%), Postives = 190/371 (51.21%), Query Frame = 0


Query: 1   ILCLLLLCFFTPAISSSGL--CFDTRCQGDDQTIRFPFRIENRQPSSCGYPGFDLSCHAT 60
           +L  L+  FF P +++S    C+   C  +    RFPF + + QP SCGY GF+L C   
Sbjct: 8   LLLNLIFLFFFPLLNASEQKPCYSFSCSQESVVARFPFSLFSYQPESCGYSGFNLICKDD 67

Query: 61  AQPRLHLPPSGNFSVQFIDYQNQEIWVNDPNGCLPGKILSLNLSGSPFAGKYTQDFTFFN 120
           A   L LP S  F V+ IDY+ Q I +NDP  CL  ++L+ + SGSPF+   ++++TF  
Sbjct: 68  ANTTLKLPKSEPFLVKEIDYETQRIRLNDPENCLARRLLNFDPSGSPFSFLRSRNYTFLI 127

Query: 121 CSAKVRLPYGLNLNPISCLSGLSYAVFASSSPMIINDLSSNCVVMKSVSVPVSWSFS--- 180
           C  +  +    +   I CL   + + F       +  + S+C + K + +P SW  +   
Sbjct: 128 CPKEANIT--ASFRAIDCLGNTTSSFFVVQFEN-LGSMPSSCHIFKILPLPFSWFVAYTT 187

Query: 181 ---SDLRDDLQLAWKKPACGSCESR-GGRCEPNPNSSNQIQCTPITQPQPKQRLPRGARY 240
                   D+ L W  P C  CE R   RC    N+S+Q++C     P       +  + 
Sbjct: 188 YPDGQNSRDMWLKWDSPDCRDCERRTNSRCGFKNNTSHQVECFSSVNPGLHNTGLQVLKI 247

Query: 241 AVAIGVGVPAGLCF-LGLLCCFCARLRYYSRPRARSSSIEAHWVISSQPT---TTMGLDG 300
                VG    L F +GL+ C   R+   S    ++        ++SQP+     +GLD 
Sbjct: 248 MCLSLVGPLTALTFCVGLVMCSSERV---SSQIQQAVVARLSGSVTSQPSNEVARIGLDE 307

Query: 301 PTIDSYPKFVLGQSLRLPE-PNGSICPICLSEYRPKEIVKTIPDCQHCFHQDCIDEWLRL 358
            TI+SY K  LG+S RLP   N  +CPICLSEY  KE V+ +P+C+HCFH +CID WL+L
Sbjct: 308 STIESYKKVELGESRRLPTGSNDVVCPICLSEYATKETVRCLPECEHCFHTECIDAWLKL 367

[Close]

BLAST of MS000484 vs. ExPASy Swiss-Prot
Match: P0CH02 (Putative RING-H2 finger protein ATL21B OS=Arabidopsis thaliana OX=3702 GN=ATL21B PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 3.7e-53
Identity = 131/377 (34.75%), Postives = 183/377 (48.54%), Query Frame = 0


Query: 1   ILCLLLLCFF--------TPAISSSGLCFDTRCQGDDQTIRFPFRIENRQPSSCGYPGFD 60
           +  L  L FF         P+  SS      RC   +  IRFPF         C +P F+
Sbjct: 7   LFLLFFLLFFIFPLRHASNPSKCSSSNSRPHRCGPLEVPIRFPF---------CDHPLFN 66

Query: 61  LSCHATAQPRLHLPPSGNFSVQFIDYQNQEIWVNDPNGCLPGKILSLNLSGSPFAGKYTQ 120
           L C       L LP SG F VQ+IDY+ Q+I++NDP  CL  ++L+ N+SGSPF+ ++  
Sbjct: 67  LLCTNLNNTVLQLPMSGTFFVQYIDYRKQQIYINDPENCLAKRLLTFNISGSPFSPRFDT 126

Query: 121 DFTFFNCSAKVRLPYGLNLNPISCLSGLSYAVFASSSPMIINDLSSNCVVMKSVSVP--- 180
            +TF  C  ++ LP       I CLS  + + FA+S+  +   +  +C ++K + VP   
Sbjct: 127 LYTFLTCPNELVLPSW--YPSIPCLSNSTSSFFATSNFALAESMLPSCQIVKRIYVPADS 186

Query: 181 --VSWSFSSDLRDDLQLAWKKPACGSCESRGGRCEPNPNSSNQIQCTPITQPQPKQRLPR 240
                 FSS L   L L W  P C  CE    RC     +S +++C    +     R   
Sbjct: 187 PFAETRFSSYLNQSLLLEWNSPNCRGCEIDYLRCGFKNKASPEVKCFGAKKSGHLSR--- 246

Query: 241 GARYAVAIGVGVPAGLCFLGLLCCFCARLRYYSRPRARSSSIEAHWVISSQPTTTM---- 300
            A  AV I + +   +    +L   C  +R ++ PR R      HW + +   T M    
Sbjct: 247 -AVVAVLICLSIIGAV----ILFVTCIAIRIHNTPRRR------HWAVPAAAATVMQQPR 306

Query: 301 ------GLDGPTIDSYPKFVLGQSLRLPEPNGSICPICLSEYRPKEIVKTIPDCQHCFHQ 355
                 GLD  TI+ Y    LG+S R P  NG +CPICLSEY  KE V+ IP+C HCFH 
Sbjct: 307 EVMATRGLDQSTIEKYKTMELGESRRPPGTNGIVCPICLSEYVSKETVRFIPECDHCFHA 358

[Close]

BLAST of MS000484 vs. ExPASy Swiss-Prot
Match: P0CH03 (Putative RING-H2 finger protein ATL21C OS=Arabidopsis thaliana OX=3702 GN=ATL21C PE=3 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.5e-46
Identity = 124/356 (34.83%), Postives = 177/356 (49.72%), Query Frame = 0


Query: 12  PAISSSGLCFDTRCQGDDQTIRFPFRIENRQPSSCGYPGFDLSCHATAQPRLHLPPSGNF 71
           P   SS      RC   +  IRFPF         C +  F+L C    +  L LP SG F
Sbjct: 26  PNNCSSSSSRPLRCGPLEVPIRFPF---------CNHARFNLHCTDLNKTVLELPMSGTF 85

Query: 72  SVQFIDYQNQEIWVNDPNGCLPGKILSLNLSGSPFAGKYTQDFTFFNCSAKVRLPYGLNL 131
            V+ IDY+ Q+I++NDPN CL  ++L+ N+SGSPF+  +   +TF +C  +V LP     
Sbjct: 86  LVRDIDYRRQKIYINDPN-CLAKRLLTFNISGSPFSPHFDILYTFLSCPNEVVLPSW--Y 145

Query: 132 NPISCLSGLSYAVFASSSPMIINDLSSNCVVMKSVSVPVS-----WSFSSDLRD-DLQLA 191
             I CLS  + + FA+S+  +   +  +C ++K + VP +       FSSDL +  L L 
Sbjct: 146 PSIPCLSNSTSSFFATSNYSLAQSMLPSCQIVKRLHVPATSPFGETRFSSDLNNQSLLLE 205

Query: 192 WKKPACGSCESRGGRCEPNPNSSNQIQCTPITQPQPKQRLPRGARYAVAIGVGVPAGLCF 251
           W  P C +      +      +SN   C+       ++    G      +  GV   +  
Sbjct: 206 WALPDCRAKCLGATKKTGTIYNSNIFSCSFSFLYDSRELFING-----NLSSGVLVLVIS 265

Query: 252 LGLLCCF----CARLRYYSRPRARSSSIEAHWVISSQPTTTM---GLDGPTIDSYPKFVL 311
           L  +  F    C  +R Y   R  S+   A   +  QP   M   GLD  TI+++ K  L
Sbjct: 266 LSAVTVFVFPTCIAIRLYDSERFDSAIAAA--TVMQQPREVMARRGLDQSTIETFKKMEL 325

Query: 312 GQSLRLPEPNGSICPICLSEYRPKEIVKTIPDCQHCFHQDCIDEWLRLNASCPFCR 355
           G+S RL   NG +CPICLSEY  KE V+ IP+C HCFH +CID WL+++ SCP CR
Sbjct: 326 GESRRLSGTNGIVCPICLSEYASKETVRFIPECDHCFHVECIDVWLKIHGSCPLCR 362

[Close]

BLAST of MS000484 vs. ExPASy Swiss-Prot
Match: Q9C7E9 (RING-H2 finger protein ATL20 OS=Arabidopsis thaliana OX=3702 GN=ATL20 PE=2 SV=2)

HSP 1 Score: 180.3 bits (456), Expect = 4.0e-44
Identity = 108/307 (35.18%), Postives = 160/307 (52.12%), Query Frame = 0


Query: 68  SGNFSVQFIDYQNQEIWVNDPNGCLPGKILSLNLSGSPFAGKYTQDFTFFNCSAKVRLPY 127
           SG F V  I+YQ Q+I ++DP  C+  ++L+ N SGSPF+  ++  +TF  C  +V +P 
Sbjct: 2   SGTFLVDEINYQKQQISISDPENCMVKRLLTFNTSGSPFSYGFSFYYTFLTCPNEVVIPV 61

Query: 128 GLNLNPISCLSGLSYAVFASSSPMIINDLSSNCVVMKSVSVPVSWSFSSDLRDD------ 187
             +L  I CLS  + + FA+S+      L  +C ++K + VPV   +   + ++      
Sbjct: 62  -WSLMSIPCLSNSTSSFFATSNLTFSKLLPPSCQIVKGLYVPVDVIYKDVITEEKGFSTV 121

Query: 188 -----LQLAWKKPACGSCESRGGRCEPNPNSSNQIQCTPITQPQPKQRLPRGARYAVAIG 247
                + L W  P C  CE    RC     +S +++       + K RL           
Sbjct: 122 PWLGNVLLEWSSPNCRGCEKESLRCGFKNKASLEVKYLADPPDETKSRLR---------- 181

Query: 248 VGVPAGLCFLGLLCCFC-ARLRYYS-----RPRARSSSIEAHWVISSQP---TTTMGLDG 307
             +   LC +G +   C A +R Y+       R ++++I A    + QP     T GLD 
Sbjct: 182 -PLIITLCIIGGITATCIAAIRIYNSERFVNQRRQNAAITAR-NTTQQPRGVVVTTGLDQ 241

Query: 308 PTIDSYPKFVLGQSLRLPEPNGSICPICLSEYRPKEIVKTIPDCQHCFHQDCIDEWLRLN 355
            TI+SY K  LG+S RLP  NG ICPICLSEY  KE V+ +P+C HCFH  CIDEWL+++
Sbjct: 242 STIESYKKVELGESRRLPGTNGIICPICLSEYASKETVRCMPECDHCFHVQCIDEWLKIH 295

[Close]

BLAST of MS000484 vs. ExPASy TrEMBL
Match: A0A6J1CJP7 (putative RING-H2 finger protein ATL21A OS=Momordica charantia OX=3673 GN=LOC111011626 PE=4 SV=1)

HSP 1 Score: 772.7 bits (1994), Expect = 6.8e-220
Identity = 363/364 (99.73%), Postives = 363/364 (99.73%), Query Frame = 0


Query: 1   ILCLLLLCFFTPAISSSGLCFDTRCQGDDQTIRFPFRIENRQPSSCGYPGFDLSCHATAQ 60
           ILCLLLLCFF PAISSSGLCFDTRCQGDDQTIRFPFRIENRQPSSCGYPGFDLSCHATAQ
Sbjct: 3   ILCLLLLCFFIPAISSSGLCFDTRCQGDDQTIRFPFRIENRQPSSCGYPGFDLSCHATAQ 62

Query: 61  PRLHLPPSGNFSVQFIDYQNQEIWVNDPNGCLPGKILSLNLSGSPFAGKYTQDFTFFNCS 120
           PRLHLPPSGNFSVQFIDYQNQEIWVNDPNGCLPGKILSLNLSGSPFAGKYTQDFTFFNCS
Sbjct: 63  PRLHLPPSGNFSVQFIDYQNQEIWVNDPNGCLPGKILSLNLSGSPFAGKYTQDFTFFNCS 122

Query: 121 AKVRLPYGLNLNPISCLSGLSYAVFASSSPMIINDLSSNCVVMKSVSVPVSWSFSSDLRD 180
           AKVRLPYGLNLNPISCLSGLSYAVFASSSPMIINDLSSNCVVMKSVSVPVSWSFSSDLRD
Sbjct: 123 AKVRLPYGLNLNPISCLSGLSYAVFASSSPMIINDLSSNCVVMKSVSVPVSWSFSSDLRD 182

Query: 181 DLQLAWKKPACGSCESRGGRCEPNPNSSNQIQCTPITQPQPKQRLPRGARYAVAIGVGVP 240
           DLQLAWKKPACGSCESRGGRCEPNPNSSNQIQCTPITQPQPKQRLPRGARYAVAIGVGVP
Sbjct: 183 DLQLAWKKPACGSCESRGGRCEPNPNSSNQIQCTPITQPQPKQRLPRGARYAVAIGVGVP 242

Query: 241 AGLCFLGLLCCFCARLRYYSRPRARSSSIEAHWVISSQPTTTMGLDGPTIDSYPKFVLGQ 300
           AGLCFLGLLCCFCARLRYYSRPRARSSSIEAHWVISSQPTTTMGLDGPTIDSYPKFVLGQ
Sbjct: 243 AGLCFLGLLCCFCARLRYYSRPRARSSSIEAHWVISSQPTTTMGLDGPTIDSYPKFVLGQ 302

Query: 301 SLRLPEPNGSICPICLSEYRPKEIVKTIPDCQHCFHQDCIDEWLRLNASCPFCRKPPIKS 360
           SLRLPEPNGSICPICLSEYRPKEIVKTIPDCQHCFHQDCIDEWLRLNASCPFCRKPPIKS
Sbjct: 303 SLRLPEPNGSICPICLSEYRPKEIVKTIPDCQHCFHQDCIDEWLRLNASCPFCRKPPIKS 362

Query: 361 LSDP 365
           LSDP
Sbjct: 363 LSDP 366

[Close]

BLAST of MS000484 vs. ExPASy TrEMBL
Match: A0A6J1J338 (RING-H2 finger protein ATL22-like OS=Cucurbita maxima OX=3661 GN=LOC111482960 PE=4 SV=1)

HSP 1 Score: 510.4 bits (1313), Expect = 6.3e-141
Identity = 250/360 (69.44%), Postives = 283/360 (78.61%), Query Frame = 0


Query: 2   LCLL-LLCFFTPAISSSGLCFDTRCQGDDQTIRFPFRIENRQPSSCGYPGFDLSCHATAQ 61
           LC L  LC F+PA S+S LCF + C GD QTI+FPFRIEN+QP SCGYPGFDL+C +T Q
Sbjct: 8   LCFLCFLCLFSPA-STSELCFHSSCNGDFQTIQFPFRIENQQPKSCGYPGFDLTCPSTGQ 67

Query: 62  PRLHLPPSGNFSVQFIDYQNQEIWVNDPNGCLPGKILSLNLSGSPFAGKYTQDFTFFNCS 121
           P LHLP SG+F+VQ+IDY+NQEI VNDPN CLP KILSL LSGSPF    ++DFT FNCS
Sbjct: 68  PLLHLPSSGDFTVQYIDYENQEILVNDPNKCLPRKILSLELSGSPFQATNSEDFTLFNCS 127

Query: 122 AKVRLPYGLNLNPISCLSGLSYAVFASSSPMIINDLSSNCVVMKSVSVPVSWSFSSDLRD 181
               +P  LNLNPI CLSGLSYAVFAS S  +   LSS CV MK+VSVP SWSFS DL +
Sbjct: 128 WSDPIPSELNLNPIYCLSGLSYAVFASPSSFVNEILSSRCVAMKTVSVPYSWSFSPDLTN 187

Query: 182 DLQLAWKKPACGSCESRGGRCEPNPNSSNQIQCTPITQPQPKQRLPRGARYAVAIGVGVP 241
           DL+L WKKP C  CES GG C   PNS++QIQC      QP+  +PRGARYAV+IGVGVP
Sbjct: 188 DLRLGWKKPNCRRCESHGGICGLEPNSTDQIQCK--HSAQPRHGIPRGARYAVSIGVGVP 247

Query: 242 AGLCFLGLLCCFCARLRYYSRPRARSSSIEAHWVISSQPTTTMGLDGPTIDSYPKFVLGQ 301
             +C LG LCCFCAR+R YS  R R+SSIEAHWVISS+P T MGLD PTIDSYPKF LG+
Sbjct: 248 VSMCVLGFLCCFCARVRSYS--RGRNSSIEAHWVISSRP-TLMGLDEPTIDSYPKFELGE 307

Query: 302 SLRLPEPNGSICPICLSEYRPKEIVKTIPDCQHCFHQDCIDEWLRLNASCPFCRKPPIKS 361
           SLRLP+PN +IC ICLSEYRPKEIVK+IP C+H FHQDCIDEWLRLNASCP CR PP+KS
Sbjct: 308 SLRLPKPNDNICAICLSEYRPKEIVKSIPHCRHFFHQDCIDEWLRLNASCPVCRMPPVKS 361

[Close]

BLAST of MS000484 vs. ExPASy TrEMBL
Match: A0A6J1CJI6 (putative RING-H2 finger protein ATL21B OS=Momordica charantia OX=3673 GN=LOC111011573 PE=4 SV=1)

HSP 1 Score: 506.5 bits (1303), Expect = 9.1e-140
Identity = 256/366 (69.95%), Postives = 288/366 (78.69%), Query Frame = 0


Query: 3   CLLLLCFFTPAISSSGLCFDTRCQGDDQTIRFPFRIENRQPSSCGYPGFDLSCHA----T 62
           CLLL CFF PA +SSG CF++RC GD QTIRFPFRIENRQP SCGYPGFDLSC A     
Sbjct: 9   CLLLCCFFNPA-TSSGFCFESRCGGDYQTIRFPFRIENRQPKSCGYPGFDLSCQAHPTGQ 68

Query: 63  AQPRLHLPPSGNFSVQFIDYQNQEIWVNDPNGCLPGKILSLNLSGSPFAGKYTQDFTFFN 122
            QP LHLPPSG+FSV++IDY+NQEIW+NDPN CL GKILSLNLSGSPF  K +QDFTFFN
Sbjct: 69  DQPLLHLPPSGDFSVKYIDYRNQEIWINDPNNCLAGKILSLNLSGSPFVAKNSQDFTFFN 128

Query: 123 CSAKVRLPYGLNLNPISCLSGLSYAVFASSSPMIINDLSSNCVVMKSVSVPVSWSFSSDL 182
           CSA    P  L ++PI CL   S+AVFASSSP  I+ LSSNCVV+K+VSVPVSWSF   L
Sbjct: 129 CSADYS-PSWL-IDPIYCLGSSSHAVFASSSPATIDILSSNCVVIKTVSVPVSWSFWPKL 188

Query: 183 RDDLQLAWKKPACGSCESRGGRCEPNPNSS--NQIQCTPITQPQPKQRLPRGARYAVAIG 242
            DDL L W+ PACGSCES GG CE  PNSS  ++IQCT I    P+   P  +  A+++ 
Sbjct: 189 WDDLLLRWENPACGSCESLGGGCELKPNSSSRHEIQCTNI----PQAATPSNSSSALSMA 248

Query: 243 VGVPAG-LCFLGLLCCFCARLRYYSRPRARSSSIEAHWVISSQPTTTMGLDGPTIDSYPK 302
           VGV A  LCFL LLCC CARLR  SRP  R+SS E HW +SSQPTTTMGLDGPTIDSYP 
Sbjct: 249 VGVVAAVLCFLILLCCLCARLR--SRP--RNSSPETHWTVSSQPTTTMGLDGPTIDSYPN 308

Query: 303 FVLGQSLRLPEPNGSICPICLSEYRPKEIVKTIPDCQHCFHQDCIDEWLRLNASCPFCRK 362
           FVLGQSLRLPEPN +ICPICLS+YRPKEI+K+IP+CQHCFHQ CI+EWLRLNASCP CRK
Sbjct: 309 FVLGQSLRLPEPNNNICPICLSQYRPKEILKSIPNCQHCFHQHCIEEWLRLNASCPVCRK 363

[Close]

BLAST of MS000484 vs. ExPASy TrEMBL
Match: A0A1S3B3U1 (RING-H2 finger protein ATL20-like OS=Cucumis melo OX=3656 GN=LOC103485700 PE=4 SV=1)

HSP 1 Score: 506.5 bits (1303), Expect = 9.1e-140
Identity = 246/360 (68.33%), Postives = 280/360 (77.78%), Query Frame = 0


Query: 4   LLLLCFFTPAISSSGLCFDTRCQGDDQTIRFPFRIENRQPSSCGYPGFDLSCHATAQPRL 63
           L  LCFF    ++S LCFD+ C G+ QTIRFPFRI+N+QP SCGYPGFDL+CH T QP +
Sbjct: 13  LCFLCFFN-LTTTSELCFDSTCNGNFQTIRFPFRIQNKQPKSCGYPGFDLTCHPTGQPLI 72

Query: 64  HLPPSGNFSVQFIDYQNQEIWVNDPNGCLPGKILSLNLSGSPFAGKYTQDFTFFNCSAKV 123
           HLP SG F VQ+IDYQNQEIWVNDPN CLP KILSL L GSPF  K T DFTFFNCS   
Sbjct: 73  HLPLSGEFIVQYIDYQNQEIWVNDPNNCLPRKILSLMLFGSPFDAKNTVDFTFFNCSGSD 132

Query: 124 RLPYGLNLNPISCLSGLSYAVFASSSPMIINDLSSNCVVMKSVSVPV---SWSFSSDLRD 183
            +PY  NLNPISCLSGLSYAVFASSS M+   LSS C ++K+VSVP+   S+S+  DLR+
Sbjct: 133 EIPYDFNLNPISCLSGLSYAVFASSSSMVNGILSSRCELVKTVSVPMSSESYSWDLDLRN 192

Query: 184 DLQLAWKKPACGSCESRGGRCEPNPNSSNQIQCTPITQPQPKQRLPRGARYAVAIGVGVP 243
           DL+L WKKP C  CE  GG C   PNS+N+IQC   T       +PRGARYA++IGVGVP
Sbjct: 193 DLRLVWKKPNCKKCELNGGVCGIKPNSTNEIQCKYNT--STPSGMPRGARYAISIGVGVP 252

Query: 244 AGLCFLGLLCCFCARLRYYSRPRARSSSIEAHWVISSQPTTTMGLDGPTIDSYPKFVLGQ 303
           A +C LG LCCFCAR+R  S  R R+SSIEAHWVISS+P  TMGLDGPTIDSYPK VLG+
Sbjct: 253 ATMCVLGFLCCFCARVR-SSSTRGRNSSIEAHWVISSRP-ITMGLDGPTIDSYPKIVLGE 312

Query: 304 SLRLPEPNGSICPICLSEYRPKEIVKTIPDCQHCFHQDCIDEWLRLNASCPFCRKPPIKS 361
           SLRLP+P+ +ICPICLSEYRPKE VKTIP C+H FHQDCIDEWLRLN SCP CR PP+KS
Sbjct: 313 SLRLPKPSDNICPICLSEYRPKETVKTIPQCRHFFHQDCIDEWLRLNPSCPLCRMPPLKS 367

[Close]

BLAST of MS000484 vs. ExPASy TrEMBL
Match: A0A6J1E4R1 (RING-H2 finger protein ATL22-like OS=Cucurbita moschata OX=3662 GN=LOC111430762 PE=4 SV=1)

HSP 1 Score: 504.2 bits (1297), Expect = 4.5e-139
Identity = 247/361 (68.42%), Postives = 283/361 (78.39%), Query Frame = 0


Query: 1   ILCLL-LLCFFTPAISSSGLCFDTRCQGDDQTIRFPFRIENRQPSSCGYPGFDLSCHATA 60
           +LCLL  LC F+PA S+S LCF + C GD QTI+FPFRIEN+QP SCGYPGFDL+C +T 
Sbjct: 7   LLCLLCFLCLFSPA-STSELCFHSSCNGDFQTIQFPFRIENQQPKSCGYPGFDLTCPSTG 66

Query: 61  QPRLHLPPSGNFSVQFIDYQNQEIWVNDPNGCLPGKILSLNLSGSPFAGKYTQDFTFFNC 120
           QP LHLP SG+F+VQ+IDY+NQEI VNDPN CLP KILSL LSGSPF    ++DFTFFNC
Sbjct: 67  QPLLHLPSSGDFTVQYIDYENQEILVNDPNKCLPRKILSLELSGSPFHATNSEDFTFFNC 126

Query: 121 SAKVRLPYGLNLNPISCLSGLSYAVFASSSPMIINDLSSNCVVMKSVSVPVSWSFSSDLR 180
           S    +P   NLNPI CLSGLSYAVFAS S  +   LSS+CV MK+VSVP SWSFS+DL 
Sbjct: 127 SWSDPIPSEFNLNPIYCLSGLSYAVFASPSSFVNEILSSSCVAMKTVSVPYSWSFSADLT 186

Query: 181 DDLQLAWKKPACGSCESRGGRCEPNPNSSNQIQCTPITQPQPKQRLPRGARYAVAIGVGV 240
           +DL+L WKKP C  CES+GG C   PNS++QIQC      QP+  +PRGARYAV+IGVGV
Sbjct: 187 NDLRLGWKKPNCRRCESQGGICGLAPNSTDQIQCK--HSAQPRHGIPRGARYAVSIGVGV 246

Query: 241 PAGLCFLGLLCCFCARLRYYSRPRARSSSIEAHWVISSQPTTTMGLDGPTIDSYPKFVLG 300
           P  +C LG LCCFCAR+  YS  R R+SSIEAHWVISS+P T MGLD PTIDSYPK  LG
Sbjct: 247 PVSMCILGFLCCFCARVGSYS--RGRNSSIEAHWVISSRP-TLMGLDEPTIDSYPKIELG 306

Query: 301 QSLRLPEPNGSICPICLSEYRPKEIVKTIPDCQHCFHQDCIDEWLRLNASCPFCRKPPIK 360
           +SLRLP+PN +IC ICLSEYRPKE VK+IP CQH FHQDCI EWLRLN SCP CR PP+K
Sbjct: 307 ESLRLPKPNDNICAICLSEYRPKETVKSIPQCQHFFHQDCIHEWLRLNPSCPVCRMPPVK 361

[Close]

BLAST of MS000484 vs. TAIR 10
Match: AT5G53110.1 (RING/U-box superfamily protein )

HSP 1 Score: 352.4 bits (903), Expect = 4.2e-97
Identity = 184/372 (49.46%), Postives = 240/372 (64.52%), Query Frame = 0


Query: 1   ILCLLLLCFFTPAISSSGLCFDTRCQGDDQTIRFPFRIENRQPSSCGY-PGFDLSCHATA 60
           +L L LL   T   +S+  C +  C+ D   IRFPFR++++Q  SCGY  GFDL+C   A
Sbjct: 11  LLFLSLLIPTTTTTTSTVTCTNAVCRRDGPIIRFPFRLKHQQSHSCGYDKGFDLTCDINA 70

Query: 61  QPR--LHLPPSGNFSVQFIDYQNQEIWVNDPNGCLPGKILSLNLSGSPFAGKYTQDFTFF 120
             R  + LP SGNF+V+ IDY  QEIW+NDPN CLP +IL LNL+ +PF+G Y + FTFF
Sbjct: 71  GNRTTITLPFSGNFTVEEIDYAAQEIWINDPNNCLPQRILQLNLNSTPFSGVYMRQFTFF 130

Query: 121 NCSAKVRLPYGLNLNPISCLSGLSYAVFASSSPMIINDLSS-NCVVMKSVSVPVSWSF-- 180
           NC     L +   LNPI+CLSG +  VFA+ SP +IN LSS +C +MK+V VPV W F  
Sbjct: 131 NCPTSEYLRF-RPLNPITCLSGKNSTVFATPSPRVINYLSSQSCRLMKTVYVPVRWPFYE 190

Query: 181 ----SSDLRDDLQLAWKKPACGSCESRGGRCEPNPNSSNQIQCTPITQPQPKQRLPRGAR 240
               SSDL D+L L W+ P C  CE +GG+C    NSS +I C+ + +P     +PR AR
Sbjct: 191 QIVSSSDLSDNLWLTWRVPRCSRCEIKGGKCGIKSNSSREIICSHVHKP----AIPRRAR 250

Query: 241 YAVAIGVGVPAGLCFLGLLCCFCARL-----RYYSRPRARSSSIEAHWVISSQPTTTMGL 300
           YA+A+G G+P  L   GL C   +++     R    P    ++ +AH++ SS     MGL
Sbjct: 251 YAIAVGAGIPGALIVFGLFCFVYSKISSCIKRRRLVPTPEINNAQAHYLHSS--VIVMGL 310

Query: 301 DGPTIDSYPKFVLGQSLRLPEPNGSICPICLSEYRPKEIVKTIPDCQHCFHQDCIDEWLR 358
           DGPTI+SYPK VLG+S RLP+ + + C ICLSEY PKE ++TIP CQHCFH DCIDEWL+
Sbjct: 311 DGPTIESYPKIVLGESKRLPKVDDATCAICLSEYEPKETLRTIPQCQHCFHADCIDEWLK 370

[Close]

BLAST of MS000484 vs. TAIR 10
Match: AT2G46495.1 (RING/U-box superfamily protein )

HSP 1 Score: 226.9 bits (577), Expect = 2.7e-59
Identity = 136/375 (36.27%), Postives = 195/375 (52.00%), Query Frame = 0


Query: 5   LLLCFFTPAISSS--GLCFDTRCQGDDQTIRFPFRIENRQPSSCGYPGFDLSCHATAQPR 64
           L L F  P + +S    C  + C  DD  +RFPF + ++QP  CG+ GF+L C A+ +  
Sbjct: 9   LYLFFLFPLLHASHPQQCSSSSCGRDDVHVRFPFWLLSKQPELCGHAGFNLQCTASPKTA 68

Query: 65  LHLPPSGNFSVQFIDYQNQEIWVNDPNGCLPGKILSLNLSGSPFAGKYTQDFTFFNCSAK 124
           L LP SG F V+ IDY +Q+I + DP  CL  K+L+ ++S SPF+  Y   +TF +C  +
Sbjct: 69  LKLPNSGTFLVREIDYLSQQIRLYDPENCLARKLLTFDISRSPFSALYLVSYTFLSCPNE 128

Query: 125 VRLPYGLNLNPISCLSGLSYAVFASSSPMIINDLSSNCVVMKSVSVPVS-------WSFS 184
           V        + I CL   + +  A++S  +   +  +C ++K++ VPVS         FS
Sbjct: 129 V--AKSSRFDSIPCLGNSTTSFLATTSLDLAKSMLPSCQIVKTLDVPVSRRVIAKKSRFS 188

Query: 185 SDLRD-DLQLAWKKPACGSCESRGGRCEPNPNSSNQIQCTPI------TQPQPKQRLPRG 244
           +D+ D DL L W  P+C  CE    RC    N+S Q++C P       T+PQ  + +   
Sbjct: 189 TDVNDKDLWLKWDSPSCSDCERDFLRCGFRSNTSLQVKCFPFENSGYNTEPQVLKIILLS 248

Query: 245 -----ARYAVAIGVGVPAGLCFLGLLCCFCARLRYYSRPRARSSSIEAHWVISSQPTTTM 304
                  +A  I VGV           C   R     +     ++++ + VI      T 
Sbjct: 249 IIGPLTIFATCIAVGV-----------CTSERFASLIQRNVAIAALQPNEVI-----VTT 308

Query: 305 GLDGPTIDSYPKFVLGQSLRLPEPNGSI-CPICLSEYRPKEIVKTIPDCQHCFHQDCIDE 358
           GLD   I+SY K  LG+S RLP  N  I CPICLSEY  KE V+ IP+C HCFH +CID 
Sbjct: 309 GLDESIIESYKKTELGESRRLPGNNDDIVCPICLSEYASKETVRCIPECDHCFHSECIDV 365

[Close]

BLAST of MS000484 vs. TAIR 10
Match: AT2G25410.1 (RING/U-box superfamily protein )

HSP 1 Score: 216.9 bits (551), Expect = 2.8e-56
Identity = 129/371 (34.77%), Postives = 190/371 (51.21%), Query Frame = 0


Query: 1   ILCLLLLCFFTPAISSSGL--CFDTRCQGDDQTIRFPFRIENRQPSSCGYPGFDLSCHAT 60
           +L  L+  FF P +++S    C+   C  +    RFPF + + QP SCGY GF+L C   
Sbjct: 8   LLLNLIFLFFFPLLNASEQKPCYSFSCSQESVVARFPFSLFSYQPESCGYSGFNLICKDD 67

Query: 61  AQPRLHLPPSGNFSVQFIDYQNQEIWVNDPNGCLPGKILSLNLSGSPFAGKYTQDFTFFN 120
           A   L LP S  F V+ IDY+ Q I +NDP  CL  ++L+ + SGSPF+   ++++TF  
Sbjct: 68  ANTTLKLPKSEPFLVKEIDYETQRIRLNDPENCLARRLLNFDPSGSPFSFLRSRNYTFLI 127

Query: 121 CSAKVRLPYGLNLNPISCLSGLSYAVFASSSPMIINDLSSNCVVMKSVSVPVSWSFS--- 180
           C  +  +    +   I CL   + + F       +  + S+C + K + +P SW  +   
Sbjct: 128 CPKEANIT--ASFRAIDCLGNTTSSFFVVQFEN-LGSMPSSCHIFKILPLPFSWFVAYTT 187

Query: 181 ---SDLRDDLQLAWKKPACGSCESR-GGRCEPNPNSSNQIQCTPITQPQPKQRLPRGARY 240
                   D+ L W  P C  CE R   RC    N+S+Q++C     P       +  + 
Sbjct: 188 YPDGQNSRDMWLKWDSPDCRDCERRTNSRCGFKNNTSHQVECFSSVNPGLHNTGLQVLKI 247

Query: 241 AVAIGVGVPAGLCF-LGLLCCFCARLRYYSRPRARSSSIEAHWVISSQPT---TTMGLDG 300
                VG    L F +GL+ C   R+   S    ++        ++SQP+     +GLD 
Sbjct: 248 MCLSLVGPLTALTFCVGLVMCSSERV---SSQIQQAVVARLSGSVTSQPSNEVARIGLDE 307

Query: 301 PTIDSYPKFVLGQSLRLPE-PNGSICPICLSEYRPKEIVKTIPDCQHCFHQDCIDEWLRL 358
            TI+SY K  LG+S RLP   N  +CPICLSEY  KE V+ +P+C+HCFH +CID WL+L
Sbjct: 308 STIESYKKVELGESRRLPTGSNDVVCPICLSEYATKETVRCLPECEHCFHTECIDAWLKL 367

[Close]

BLAST of MS000484 vs. TAIR 10
Match: AT2G46494.1 (RING/U-box superfamily protein )

HSP 1 Score: 210.3 bits (534), Expect = 2.6e-54
Identity = 131/377 (34.75%), Postives = 183/377 (48.54%), Query Frame = 0


Query: 1   ILCLLLLCFF--------TPAISSSGLCFDTRCQGDDQTIRFPFRIENRQPSSCGYPGFD 60
           +  L  L FF         P+  SS      RC   +  IRFPF         C +P F+
Sbjct: 7   LFLLFFLLFFIFPLRHASNPSKCSSSNSRPHRCGPLEVPIRFPF---------CDHPLFN 66

Query: 61  LSCHATAQPRLHLPPSGNFSVQFIDYQNQEIWVNDPNGCLPGKILSLNLSGSPFAGKYTQ 120
           L C       L LP SG F VQ+IDY+ Q+I++NDP  CL  ++L+ N+SGSPF+ ++  
Sbjct: 67  LLCTNLNNTVLQLPMSGTFFVQYIDYRKQQIYINDPENCLAKRLLTFNISGSPFSPRFDT 126

Query: 121 DFTFFNCSAKVRLPYGLNLNPISCLSGLSYAVFASSSPMIINDLSSNCVVMKSVSVP--- 180
            +TF  C  ++ LP       I CLS  + + FA+S+  +   +  +C ++K + VP   
Sbjct: 127 LYTFLTCPNELVLPSW--YPSIPCLSNSTSSFFATSNFALAESMLPSCQIVKRIYVPADS 186

Query: 181 --VSWSFSSDLRDDLQLAWKKPACGSCESRGGRCEPNPNSSNQIQCTPITQPQPKQRLPR 240
                 FSS L   L L W  P C  CE    RC     +S +++C    +     R   
Sbjct: 187 PFAETRFSSYLNQSLLLEWNSPNCRGCEIDYLRCGFKNKASPEVKCFGAKKSGHLSR--- 246

Query: 241 GARYAVAIGVGVPAGLCFLGLLCCFCARLRYYSRPRARSSSIEAHWVISSQPTTTM---- 300
            A  AV I + +   +    +L   C  +R ++ PR R      HW + +   T M    
Sbjct: 247 -AVVAVLICLSIIGAV----ILFVTCIAIRIHNTPRRR------HWAVPAAAATVMQQPR 306

Query: 301 ------GLDGPTIDSYPKFVLGQSLRLPEPNGSICPICLSEYRPKEIVKTIPDCQHCFHQ 355
                 GLD  TI+ Y    LG+S R P  NG +CPICLSEY  KE V+ IP+C HCFH 
Sbjct: 307 EVMATRGLDQSTIEKYKTMELGESRRPPGTNGIVCPICLSEYVSKETVRFIPECDHCFHA 358

[Close]

BLAST of MS000484 vs. TAIR 10
Match: AT1G28040.1 (RING/U-box superfamily protein )

HSP 1 Score: 180.3 bits (456), Expect = 2.9e-45
Identity = 108/307 (35.18%), Postives = 160/307 (52.12%), Query Frame = 0


Query: 68  SGNFSVQFIDYQNQEIWVNDPNGCLPGKILSLNLSGSPFAGKYTQDFTFFNCSAKVRLPY 127
           SG F V  I+YQ Q+I ++DP  C+  ++L+ N SGSPF+  ++  +TF  C  +V +P 
Sbjct: 2   SGTFLVDEINYQKQQISISDPENCMVKRLLTFNTSGSPFSYGFSFYYTFLTCPNEVVIPV 61

Query: 128 GLNLNPISCLSGLSYAVFASSSPMIINDLSSNCVVMKSVSVPVSWSFSSDLRDD------ 187
             +L  I CLS  + + FA+S+      L  +C ++K + VPV   +   + ++      
Sbjct: 62  -WSLMSIPCLSNSTSSFFATSNLTFSKLLPPSCQIVKGLYVPVDVIYKDVITEEKGFSTV 121

Query: 188 -----LQLAWKKPACGSCESRGGRCEPNPNSSNQIQCTPITQPQPKQRLPRGARYAVAIG 247
                + L W  P C  CE    RC     +S +++       + K RL           
Sbjct: 122 PWLGNVLLEWSSPNCRGCEKESLRCGFKNKASLEVKYLADPPDETKSRLR---------- 181

Query: 248 VGVPAGLCFLGLLCCFC-ARLRYYS-----RPRARSSSIEAHWVISSQP---TTTMGLDG 307
             +   LC +G +   C A +R Y+       R ++++I A    + QP     T GLD 
Sbjct: 182 -PLIITLCIIGGITATCIAAIRIYNSERFVNQRRQNAAITAR-NTTQQPRGVVVTTGLDQ 241

Query: 308 PTIDSYPKFVLGQSLRLPEPNGSICPICLSEYRPKEIVKTIPDCQHCFHQDCIDEWLRLN 355
            TI+SY K  LG+S RLP  NG ICPICLSEY  KE V+ +P+C HCFH  CIDEWL+++
Sbjct: 242 STIESYKKVELGESRRLPGTNGIICPICLSEYASKETVRCMPECDHCFHVQCIDEWLKIH 295

The following BLAST results are available for this feature:

BLAST of MS000484 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141168.1	1.4e-219	99.73	putative RING-H2 finger protein ATL21A [Momordica charantia]	[more]
XP_038905493.1	6.9e-142	69.83	RING-H2 finger protein ATL20-like [Benincasa hispida]	[more]
XP_023553169.1	4.5e-141	69.25	RING-H2 finger protein ATL22-like [Cucurbita pepo subsp. pepo]	[more]
XP_022984777.1	1.3e-140	69.44	RING-H2 finger protein ATL22-like [Cucurbita maxima]	[more]
XP_022141098.1	1.9e-139	69.95	putative RING-H2 finger protein ATL21B [Momordica charantia]	[more]

BLAST of MS000484 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0CH01	3.8e-58	36.27	Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A...	[more]
Q9SKK8	3.9e-55	34.77	RING-H2 finger protein ATL22 OS=Arabidopsis thaliana OX=3702 GN=ATL22 PE=2 SV=2	[more]
P0CH02	3.7e-53	34.75	Putative RING-H2 finger protein ATL21B OS=Arabidopsis thaliana OX=3702 GN=ATL21B...	[more]
P0CH03	2.5e-46	34.83	Putative RING-H2 finger protein ATL21C OS=Arabidopsis thaliana OX=3702 GN=ATL21C...	[more]
Q9C7E9	4.0e-44	35.18	RING-H2 finger protein ATL20 OS=Arabidopsis thaliana OX=3702 GN=ATL20 PE=2 SV=2	[more]

BLAST of MS000484 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CJP7	6.8e-220	99.73	putative RING-H2 finger protein ATL21A OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1J338	6.3e-141	69.44	RING-H2 finger protein ATL22-like OS=Cucurbita maxima OX=3661 GN=LOC111482960 PE...	[more]
A0A6J1CJI6	9.1e-140	69.95	putative RING-H2 finger protein ATL21B OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A1S3B3U1	9.1e-140	68.33	RING-H2 finger protein ATL20-like OS=Cucumis melo OX=3656 GN=LOC103485700 PE=4 S...	[more]
A0A6J1E4R1	4.5e-139	68.42	RING-H2 finger protein ATL22-like OS=Cucurbita moschata OX=3662 GN=LOC111430762 ...	[more]

BLAST of MS000484 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53110.1	4.2e-97	49.46	RING/U-box superfamily protein	[more]
AT2G46495.1	2.7e-59	36.27	RING/U-box superfamily protein	[more]
AT2G25410.1	2.8e-56	34.77	RING/U-box superfamily protein	[more]
AT2G46494.1	2.6e-54	34.75	RING/U-box superfamily protein	[more]
AT1G28040.1	2.9e-45	35.18	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 312..353 e-value: 2.1E-6 score: 37.2
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 312..354 e-value: 1.7E-12 score: 47.5
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 312..354 score: 12.725326
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 272..358 e-value: 1.1E-18 score: 68.7
IPR025287	Wall-associated receptor kinase, galacturonan-binding domain	PFAM	PF13947	GUB_WAK_bind	coord: 20..87 e-value: 2.0E-18 score: 66.6
IPR032872	Wall-associated receptor kinase, C-terminal	PFAM	PF14380	WAK_assoc	coord: 170..213 e-value: 6.2E-6 score: 26.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 200..221
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 196..221
None	No IPR available	PANTHER	PTHR46279	RING/U-BOX SUPERFAMILY PROTEIN	coord: 3..361
None	No IPR available	PANTHER	PTHR46279:SF10	RING/U-BOX SUPERFAMILY PROTEIN	coord: 3..361
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 300..358

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000484.1	MS000484.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0030247	polysaccharide binding