MS000466 (gene) Bitter gourd (TR) v1

Overview


Name	MS000466
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	arabinogalactan peptide 22-like
Location	scaffold44: 1897487 .. 1897919 (-)
RNA-Seq Expression	MS000466
Synteny	MS000466

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTTTCCAGGGCTTGTTTTGGCATCTACGCTGGGATTATTGCTATCCTTTTTGTCATTATTTTGCCTGTATCTCGAGCAGAACATTCCTCTTCTCCAGCTCCGGCTCCCTCTAGCGATGGTTAGTTGTTAGTTCCCTTTTCTTCTCTGGTTTTTTCTGTTTGTTTCTTGAGAAATTTGCTGGGAAAGAAAAAGACAGGAAATCCAAAAATGGGCAGCATCAATCCAATTGAATCTCCTTAAATTGGAAATGGGTTTTTGGAAAGTTGGCTCCTTGTTTGAATGAAAGCAAAAACTAGAAACCTTGCTATTAATGGTGCAGCATTCCAGAATAACATTTGCCATTTATTATGTTGCAGGAACCACAATAGACCAAGGGATTGCATACATTCTAATGCTGCTGGCTTTAGTGCTCACTTATATCATCCAT

mRNA sequence

ATGGCTGTTTCCAGGGCTTGTTTTGGCATCTACGCTGGGATTATTGCTATCCTTTTTGTCATTATTTTGCCTGTATCTCGAGCAGAACATTCCTCTTCTCCAGCTCCGGCTCCCTCTAGCGATGGAACCACAATAGACCAAGGGATTGCATACATTCTAATGCTGCTGGCTTTAGTGCTCACTTATATCATCCAT

Coding sequence (CDS)

ATGGCTGTTTCCAGGGCTTGTTTTGGCATCTACGCTGGGATTATTGCTATCCTTTTTGTCATTATTTTGCCTGTATCTCGAGCAGAACATTCCTCTTCTCCAGCTCCGGCTCCCTCTAGCGATGGAACCACAATAGACCAAGGGATTGCATACATTCTAATGCTGCTGGCTTTAGTGCTCACTTATATCATCCAT

Protein sequence

MAVSRACFGIYAGIIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH

Homology

[Close]

BLAST of MS000466 vs. NCBI nr
Match: XP_022140891.1 (arabinogalactan peptide 22-like [Momordica charantia])

HSP 1 Score: 122.1 bits (305), Expect = 1.8e-24
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MAVSRACFGIYAGIIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVL 60
          MAVSRACFGIYAGIIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVL
Sbjct: 1  MAVSRACFGIYAGIIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVL 60

Query: 61 TYIIH 66
          TYIIH
Sbjct: 61 TYIIH 65

[Close]

BLAST of MS000466 vs. NCBI nr
Match: XP_022945187.1 (arabinogalactan peptide 22-like [Cucurbita moschata] >XP_023541894.1 arabinogalactan peptide 22-like [Cucurbita pepo subsp. pepo] >KAG7013292.1 Arabinogalactan peptide 22 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 106.3 bits (264), Expect = 1.0e-19
Identity = 55/65 (84.62%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 1  MAVSRACFGIYAGIIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVL 60
          MAV RACFGIYA IIAI +V++LPVSRAEH+SSPAPAP+SDGT IDQGIAYILMLLAL L
Sbjct: 1  MAVLRACFGIYAVIIAIFYVVMLPVSRAEHASSPAPAPTSDGTAIDQGIAYILMLLALAL 60

Query: 61 TYIIH 66
          TYIIH
Sbjct: 61 TYIIH 65

[Close]

BLAST of MS000466 vs. NCBI nr
Match: XP_022968217.1 (arabinogalactan peptide 22-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 99.0 bits (245), Expect = 1.6e-17
Identity = 53/67 (79.10%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1  MAVSRACFGIYAGIIAILFVIILPVSRAEHSSS--PAPAPSSDGTTIDQGIAYILMLLAL 60
          MA  RACFG+YA IIAI +V++LPVSRAEH+SS  PAPAP+SDGT IDQGIAYILMLLAL
Sbjct: 21 MAALRACFGLYAVIIAIFYVVMLPVSRAEHASSPAPAPAPTSDGTAIDQGIAYILMLLAL 80

Query: 61 VLTYIIH 66
           LTYIIH
Sbjct: 81 ALTYIIH 87

[Close]

BLAST of MS000466 vs. NCBI nr
Match: XP_022968216.1 (arabinogalactan peptide 22-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 99.0 bits (245), Expect = 1.6e-17
Identity = 53/67 (79.10%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1  MAVSRACFGIYAGIIAILFVIILPVSRAEHSSS--PAPAPSSDGTTIDQGIAYILMLLAL 60
          MA  RACFG+YA IIAI +V++LPVSRAEH+SS  PAPAP+SDGT IDQGIAYILMLLAL
Sbjct: 26 MAALRACFGLYAVIIAIFYVVMLPVSRAEHASSPAPAPAPTSDGTAIDQGIAYILMLLAL 85

Query: 61 VLTYIIH 66
           LTYIIH
Sbjct: 86 ALTYIIH 92

[Close]

BLAST of MS000466 vs. NCBI nr
Match: XP_038898060.1 (arabinogalactan protein 41-like [Benincasa hispida] >XP_038898069.1 arabinogalactan protein 41-like [Benincasa hispida])

HSP 1 Score: 97.8 bits (242), Expect = 3.6e-17
Identity = 52/66 (78.79%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 1  MAVSRACFGIYAG-IIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALV 60
          MAV +ACFGIYA  IIA+ +V+ LPVS AE SSSPAPAP+SDGTTIDQGIAY+LML+ALV
Sbjct: 1  MAVLKACFGIYAAVIIAVFYVVTLPVSAAEFSSSPAPAPTSDGTTIDQGIAYVLMLVALV 60

Query: 61 LTYIIH 66
          LTYIIH
Sbjct: 61 LTYIIH 66

[Close]

BLAST of MS000466 vs. ExPASy Swiss-Prot
Match: Q8L9T8 (Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-13
Identity = 41/65 (63.08%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 1  MAVSRACFGIYAGIIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVL 60
          M+ SR  FG+ + I++I+F I+LP++ A+ S++PAPAP+SDGTTIDQGIAY+LML+ALVL
Sbjct: 1  MSGSRLFFGV-STIVSIIFAILLPMAHAQ-SAAPAPAPTSDGTTIDQGIAYVLMLVALVL 60

Query: 61 TYIIH 66
          TY+IH
Sbjct: 61 TYLIH 63

[Close]

BLAST of MS000466 vs. ExPASy Swiss-Prot
Match: Q9FK16 (Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.8e-11
Identity = 34/52 (65.38%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 14 IIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH 66
          +  I+ VI+LP++++ HSSSPAPAP+SDGT+IDQGIAY+LM++AL LTY IH
Sbjct: 13 VFVIISVILLPIAQS-HSSSPAPAPTSDGTSIDQGIAYVLMMVALALTYFIH 63

[Close]

BLAST of MS000466 vs. ExPASy Swiss-Prot
Match: O82337 (Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.9e-09
Identity = 31/52 (59.62%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 14 IIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH 66
          + + +F +IL ++ A+ S +PAPAP+SDGT+IDQGIAY+LM++ALVLTY+IH
Sbjct: 12 LFSFVFAVILSLAGAQ-SLAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]

BLAST of MS000466 vs. ExPASy Swiss-Prot
Match: Q9M373 (Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.9e-09
Identity = 31/52 (59.62%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 14 IIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH 66
          + A +F +I P + A+ S +PAP+P+SDGT+IDQGIAY+LM++ALVLTY+IH
Sbjct: 12 LFAFVFAVISPFAGAQ-SLAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]

BLAST of MS000466 vs. ExPASy TrEMBL
Match: A0A6J1CHE0 (arabinogalactan peptide 22-like OS=Momordica charantia OX=3673 GN=LOC111011447 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 8.6e-25
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MAVSRACFGIYAGIIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVL 60
          MAVSRACFGIYAGIIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVL
Sbjct: 1  MAVSRACFGIYAGIIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVL 60

Query: 61 TYIIH 66
          TYIIH
Sbjct: 61 TYIIH 65

[Close]

BLAST of MS000466 vs. ExPASy TrEMBL
Match: A0A6J1G081 (arabinogalactan peptide 22-like OS=Cucurbita moschata OX=3662 GN=LOC111449506 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.9e-20
Identity = 55/65 (84.62%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 1  MAVSRACFGIYAGIIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVL 60
          MAV RACFGIYA IIAI +V++LPVSRAEH+SSPAPAP+SDGT IDQGIAYILMLLAL L
Sbjct: 1  MAVLRACFGIYAVIIAIFYVVMLPVSRAEHASSPAPAPTSDGTAIDQGIAYILMLLALAL 60

Query: 61 TYIIH 66
          TYIIH
Sbjct: 61 TYIIH 65

[Close]

BLAST of MS000466 vs. ExPASy TrEMBL
Match: A0A6J1HT15 (arabinogalactan peptide 22-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467520 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 7.8e-18
Identity = 53/67 (79.10%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1  MAVSRACFGIYAGIIAILFVIILPVSRAEHSSS--PAPAPSSDGTTIDQGIAYILMLLAL 60
          MA  RACFG+YA IIAI +V++LPVSRAEH+SS  PAPAP+SDGT IDQGIAYILMLLAL
Sbjct: 21 MAALRACFGLYAVIIAIFYVVMLPVSRAEHASSPAPAPAPTSDGTAIDQGIAYILMLLAL 80

Query: 61 VLTYIIH 66
           LTYIIH
Sbjct: 81 ALTYIIH 87

[Close]

BLAST of MS000466 vs. ExPASy TrEMBL
Match: A0A6J1HU96 (arabinogalactan peptide 22-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467520 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 7.8e-18
Identity = 53/67 (79.10%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1  MAVSRACFGIYAGIIAILFVIILPVSRAEHSSS--PAPAPSSDGTTIDQGIAYILMLLAL 60
          MA  RACFG+YA IIAI +V++LPVSRAEH+SS  PAPAP+SDGT IDQGIAYILMLLAL
Sbjct: 26 MAALRACFGLYAVIIAIFYVVMLPVSRAEHASSPAPAPAPTSDGTAIDQGIAYILMLLAL 85

Query: 61 VLTYIIH 66
           LTYIIH
Sbjct: 86 ALTYIIH 92

[Close]

BLAST of MS000466 vs. ExPASy TrEMBL
Match: A0A5D3BTZ5 (Arabinogalactan peptide 22 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11G00180 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.6e-16
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1  MAVSRA-CFGIYAGI-IAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLAL 60
          MAV RA CFGIYA + IA+ +V+ LPVS AE SSSPAPAP+SDGTTIDQGIAY+LML+AL
Sbjct: 1  MAVLRASCFGIYAAVLIAVFYVLALPVSSAELSSSPAPAPTSDGTTIDQGIAYVLMLVAL 60

Query: 61 VLTYIIH 66
          VLTYIIH
Sbjct: 61 VLTYIIH 67

[Close]

BLAST of MS000466 vs. TAIR 10
Match: AT5G24105.1 (arabinogalactan protein 41 )

HSP 1 Score: 76.3 bits (186), Expect = 1.0e-14
Identity = 41/65 (63.08%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 1  MAVSRACFGIYAGIIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVL 60
          M+ SR  FG+ + I++I+F I+LP++ A+ S++PAPAP+SDGTTIDQGIAY+LML+ALVL
Sbjct: 1  MSGSRLFFGV-STIVSIIFAILLPMAHAQ-SAAPAPAPTSDGTTIDQGIAYVLMLVALVL 60

Query: 61 TYIIH 66
          TY+IH
Sbjct: 61 TYLIH 63

[Close]

BLAST of MS000466 vs. TAIR 10
Match: AT5G53250.1 (arabinogalactan protein 22 )

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-12
Identity = 34/52 (65.38%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 14 IIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH 66
          +  I+ VI+LP++++ HSSSPAPAP+SDGT+IDQGIAY+LM++AL LTY IH
Sbjct: 13 VFVIISVILLPIAQS-HSSSPAPAPTSDGTSIDQGIAYVLMMVALALTYFIH 63

[Close]

BLAST of MS000466 vs. TAIR 10
Match: AT2G46330.1 (arabinogalactan protein 16 )

HSP 1 Score: 61.2 bits (147), Expect = 3.5e-10
Identity = 31/52 (59.62%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 14 IIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH 66
          + + +F +IL ++ A+ S +PAPAP+SDGT+IDQGIAY+LM++ALVLTY+IH
Sbjct: 12 LFSFVFAVILSLAGAQ-SLAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]

BLAST of MS000466 vs. TAIR 10
Match: AT3G61640.1 (arabinogalactan protein 20 )

HSP 1 Score: 61.2 bits (147), Expect = 3.5e-10
Identity = 31/52 (59.62%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 14 IIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH 66
          + A +F +I P + A+ S +PAP+P+SDGT+IDQGIAY+LM++ALVLTY+IH
Sbjct: 12 LFAFVFAVISPFAGAQ-SLAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

The following BLAST results are available for this feature:

BLAST of MS000466 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140891.1	1.8e-24	100.00	arabinogalactan peptide 22-like [Momordica charantia]	[more]
XP_022945187.1	1.0e-19	84.62	arabinogalactan peptide 22-like [Cucurbita moschata] >XP_023541894.1 arabinogala...	[more]
XP_022968217.1	1.6e-17	79.10	arabinogalactan peptide 22-like isoform X2 [Cucurbita maxima]	[more]
XP_022968216.1	1.6e-17	79.10	arabinogalactan peptide 22-like isoform X1 [Cucurbita maxima]	[more]
XP_038898060.1	3.6e-17	78.79	arabinogalactan protein 41-like [Benincasa hispida] >XP_038898069.1 arabinogalac...	[more]

BLAST of MS000466 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9T8	1.5e-13	63.08	Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1	[more]
Q9FK16	1.8e-11	65.38	Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1	[more]
O82337	4.9e-09	59.62	Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1	[more]
Q9M373	4.9e-09	59.62	Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1	[more]

BLAST of MS000466 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CHE0	8.6e-25	100.00	arabinogalactan peptide 22-like OS=Momordica charantia OX=3673 GN=LOC111011447 P...	[more]
A0A6J1G081	4.9e-20	84.62	arabinogalactan peptide 22-like OS=Cucurbita moschata OX=3662 GN=LOC111449506 PE...	[more]
A0A6J1HT15	7.8e-18	79.10	arabinogalactan peptide 22-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1HU96	7.8e-18	79.10	arabinogalactan peptide 22-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A5D3BTZ5	5.6e-16	77.61	Arabinogalactan peptide 22 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]

BLAST of MS000466 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G24105.1	1.0e-14	63.08	arabinogalactan protein 41	[more]
AT5G53250.1	1.3e-12	65.38	arabinogalactan protein 22	[more]
AT2G46330.1	3.5e-10	59.62	arabinogalactan protein 16	[more]
AT3G61640.1	3.5e-10	59.62	arabinogalactan protein 20	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009424	Arabinogalactan protein 16/20/22/41	PFAM	PF06376	AGP	coord: 33..65 e-value: 2.0E-18 score: 65.9
IPR009424	Arabinogalactan protein 16/20/22/41	PANTHER	PTHR33374	ARABINOGALACTAN PROTEIN 20	coord: 1..65
None	No IPR available	PANTHER	PTHR33374:SF38	ARABINOGALACTAN PROTEIN 41	coord: 1..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000466.1	MS000466.1	mRNA