MS000454 (gene) Bitter gourd (TR) v1

Overview


Name	MS000454
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Reticulon-like protein
Location	scaffold44: 1767747 .. 1769929 (+)
RNA-Seq Expression	MS000454
Synteny	MS000454

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGACCAACCAGGCGAGCCAGATTCGGTTATTGGAAAGATCTCCGAGAAGATCGACGCTCTCCATTCATCGGCTTCTTCCGACTCCGATGATGATAAGCCTTCGAAACTCGACGCTGCTAAATCCCGCGTTCGTAGGCTCTTCGGTAGAGAAAAGCCCGTATACGAGGTTCTGGGCGGTGGAAAACGTACTCTCTCTCTCTCTATCTCTATCTCTCTCTATATATATATCTCTTGTATTGGATCGGTTCATGGAGAAAAAAATTGAGGAGATATAACGAATTTGAAAGTTTTGTATTAACCCCTGTTATTCTGCCTTAATTGATTGCCATTGTCTTGGTTTTGCGCAAGCTATTTTCTCCTCTGGCGTCTCTCGGAAAATGGCTTCTCTATCTTCCTATATTGTTATCAATTATCATCGGGATGTGCGTGCATTTACCGTCTTATGTTACAATAGAATAATATCTTCTCATTTTCCTTTCGTATGAGTTATGCACGAAAACCCTAGATTAATAGCGTTATGGTTCCATAATAGTTTTCTTAGATCTGGCATAAGAAAATAACTCAGTTACTTCAATTGGTACGGTTGAGTCTTGTTGCTTTATTTATTAATAGGGTAACCGCTATTTGGTTTCACGTTATGCTGCAAATCGTAGACATATAAAAAATTAAAGCGATTCTTTTTACATTTTGGTTTTTCAAGCACATTGTAGTTACGAACTTGCGAGATTGACACCTGAAAGGAGAGATCTAGTTTTTTTTTGTTTGTCTGCTGAACAACTACAAACATATTACTTACCTATTGTTATTAGTCTATTAGTGCAATTGTTTCAAGCATTTTTGGAAGTTCTTGTGAATATATATCTACAATGAGGTGCATTCATCCGTTGCTCCGTTCTGAAATTGTGGGGTCCTGGCATGGGGCCATAGCCTCAAATTTTTGCATGATTATCTTTGTTTATGAATTACAATCCCTTGTTAGTGCTGTATAATCTGTTTTAGAATATCGGATCATATGAACCTTCTTTGTATAACTGCATTAATGTAAACTGAAACTGATTAGATATACTCTTATATTTTTCTCCAAAAACGTTTGTGTAGAATATGACATTGCAGAAATATGGCCTTCTGCTCCCCACCGCTTTCCTGTCTGTATCCGTGAGGGAACTTTTCTTAAGTTATTGTAATTTTTTCTTGTCGCAGATGCTGATGTTTTTCTTTGGAGGAACAAGAAGAACTCTGCAGGTGTCCTTGGGGGTGCCACCGCCTTGTGGATCCTTTTTGAGCTGCTTGAGTACCAATTAATCACTCTTGTCTGCCATATATTAATTCTTTTTTTGGCTTTAATTTTCGTGTGGTCTAATGCTAATACGTTTATCAACAAGTAAGGACTTCAAAATCTAATGCTATATAGTCTGTTGGTTTTGTTTTATATCTTTCGTTTTTTTCTTTTTCCTTTTTTCTTTAAATATTTTTTCGTGTTGTTTGTTCAGGTCTTCACCCCACATCCCAGAAATTAGACTTAATTTAGATTGCCTGCCTGAGGTTGCCAATCAACTGAGAATTGAAATCAACCGAGTAATATCAACTTTACGTGATATTGCTTCTGGGAGAGATTTGAAGAAGTTTCTAAGTGTAAGTTCATTTCTACTTTCTCATCTCACGTGTAAATGTGTTTTTCTAGAGCAAGGGCAGTAAACTAAAAGAAACATTTCTGGCCTCAATAGTCTATTGGAAATTACTTTTTTCAGAGTTACTGCAGTCTGCAACTGTATTTTTGTACCATTTTATATATTTATAACTGGTAATGCTACTGAGGGTGTCTGATACCATTAACAGGCTTTTATTGGCTTATGGGTTCTATCAGTAGTTGGCAGTTGGTTCAACTTTCTGACTTTAGTCTATATATGTAAGGAATTCTGCTCATTCAGTTGCTTTATTTGTTATTTGCATTTGTAATTGAGAACAGGTACTTACATTAATACTTGGATGTGCAATTGTTCTTGAAAAACAGGCTTTGTCTTGCTACACACTGTGCCAGTACTTTATGAGAAGTATGAAGATCAGGTTGATCCAATTGCTGAGAAGGCCTTGATAGAGCTCAAGAAGCAGTATGCTGTATTTGATGCCAAGGTTTTGAGTAAAATCCCCAAAGGGCCACTCCAACAAAATAAGAAGGAT

mRNA sequence

ATGGCTGACCAACCAGGCGAGCCAGATTCGGTTATTGGAAAGATCTCCGAGAAGATCGACGCTCTCCATTCATCGGCTTCTTCCGACTCCGATGATGATAAGCCTTCGAAACTCGACGCTGCTAAATCCCGCGTTCGTAGGCTCTTCGGTAGAGAAAAGCCCGTATACGAGGTTCTGGGCGGTGGAAAACATGCTGATGTTTTTCTTTGGAGGAACAAGAAGAACTCTGCAGGTGTCCTTGGGGGTGCCACCGCCTTGTGGATCCTTTTTGAGCTGCTTGAGTACCAATTAATCACTCTTGTCTGCCATATATTAATTCTTTTTTTGGCTTTAATTTTCGTGTGGTCTAATGCTAATACGTTTATCAACAAGTCTTCACCCCACATCCCAGAAATTAGACTTAATTTAGATTGCCTGCCTGAGGTTGCCAATCAACTGAGAATTGAAATCAACCGAGTAATATCAACTTTACGTGATATTGCTTCTGGGAGAGATTTGAAGAAGTTTCTAAGTGCTTTTATTGGCTTATGGGTTCTATCAGTAGTTGGCAGTTGGTTCAACTTTCTGACTTTAGTCTATATATGCTTTGTCTTGCTACACACTGTGCCAGTACTTTATGAGAAGTATGAAGATCAGGTTGATCCAATTGCTGAGAAGGCCTTGATAGAGCTCAAGAAGCAGTATGCTGTATTTGATGCCAAGGTTTTGAGTAAAATCCCCAAAGGGCCACTCCAACAAAATAAGAAGGAT

Coding sequence (CDS)

ATGGCTGACCAACCAGGCGAGCCAGATTCGGTTATTGGAAAGATCTCCGAGAAGATCGACGCTCTCCATTCATCGGCTTCTTCCGACTCCGATGATGATAAGCCTTCGAAACTCGACGCTGCTAAATCCCGCGTTCGTAGGCTCTTCGGTAGAGAAAAGCCCGTATACGAGGTTCTGGGCGGTGGAAAACATGCTGATGTTTTTCTTTGGAGGAACAAGAAGAACTCTGCAGGTGTCCTTGGGGGTGCCACCGCCTTGTGGATCCTTTTTGAGCTGCTTGAGTACCAATTAATCACTCTTGTCTGCCATATATTAATTCTTTTTTTGGCTTTAATTTTCGTGTGGTCTAATGCTAATACGTTTATCAACAAGTCTTCACCCCACATCCCAGAAATTAGACTTAATTTAGATTGCCTGCCTGAGGTTGCCAATCAACTGAGAATTGAAATCAACCGAGTAATATCAACTTTACGTGATATTGCTTCTGGGAGAGATTTGAAGAAGTTTCTAAGTGCTTTTATTGGCTTATGGGTTCTATCAGTAGTTGGCAGTTGGTTCAACTTTCTGACTTTAGTCTATATATGCTTTGTCTTGCTACACACTGTGCCAGTACTTTATGAGAAGTATGAAGATCAGGTTGATCCAATTGCTGAGAAGGCCTTGATAGAGCTCAAGAAGCAGTATGCTGTATTTGATGCCAAGGTTTTGAGTAAAATCCCCAAAGGGCCACTCCAACAAAATAAGAAGGAT

Protein sequence

MADQPGEPDSVIGKISEKIDALHSSASSDSDDDKPSKLDAAKSRVRRLFGREKPVYEVLGGGKHADVFLWRNKKNSAGVLGGATALWILFELLEYQLITLVCHILILFLALIFVWSNANTFINKSSPHIPEIRLNLDCLPEVANQLRIEINRVISTLRDIASGRDLKKFLSAFIGLWVLSVVGSWFNFLTLVYICFVLLHTVPVLYEKYEDQVDPIAEKALIELKKQYAVFDAKVLSKIPKGPLQQNKKD

Homology

[Close]

BLAST of MS000454 vs. NCBI nr
Match: XP_022140804.1 (reticulon-like protein B1 isoform X1 [Momordica charantia])

HSP 1 Score: 483.4 bits (1243), Expect = 1.2e-132
Identity = 249/250 (99.60%), Postives = 250/250 (100.00%), Query Frame = 0


Query: 1   MADQPGEPDSVIGKISEKIDALHSSASSDSDDDKPSKLDAAKSRVRRLFGREKPVYEVLG 60
           MADQPGEPDSVIGKISEKIDALHSS+SSDSDDDKPSKLDAAKSRVRRLFGREKPVYEVLG
Sbjct: 1   MADQPGEPDSVIGKISEKIDALHSSSSSDSDDDKPSKLDAAKSRVRRLFGREKPVYEVLG 60

Query: 61  GGKHADVFLWRNKKNSAGVLGGATALWILFELLEYQLITLVCHILILFLALIFVWSNANT 120
           GGKHADVFLWRNKKNSAGVLGGATALWILFELLEYQLITLVCHILILFLALIFVWSNANT
Sbjct: 61  GGKHADVFLWRNKKNSAGVLGGATALWILFELLEYQLITLVCHILILFLALIFVWSNANT 120

Query: 121 FINKSSPHIPEIRLNLDCLPEVANQLRIEINRVISTLRDIASGRDLKKFLSAFIGLWVLS 180
           FINKSSPHIPEIRLNLDCLPEVANQLRIEINRVISTLRDIASGRDLKKFLSAFIGLWVLS
Sbjct: 121 FINKSSPHIPEIRLNLDCLPEVANQLRIEINRVISTLRDIASGRDLKKFLSAFIGLWVLS 180

Query: 181 VVGSWFNFLTLVYICFVLLHTVPVLYEKYEDQVDPIAEKALIELKKQYAVFDAKVLSKIP 240
           VVGSWFNFLTLVYICFVLLHTVPVLYEKYEDQVDPIAEKALIELKKQYAVFDAKVLSKIP
Sbjct: 181 VVGSWFNFLTLVYICFVLLHTVPVLYEKYEDQVDPIAEKALIELKKQYAVFDAKVLSKIP 240

Query: 241 KGPLQQNKKD 251
           KGPLQQNKKD
Sbjct: 241 KGPLQQNKKD 250

[Close]

BLAST of MS000454 vs. NCBI nr
Match: XP_022140805.1 (reticulon-like protein B1 isoform X2 [Momordica charantia])

HSP 1 Score: 412.1 bits (1058), Expect = 3.3e-111
Identity = 219/250 (87.60%), Postives = 220/250 (88.00%), Query Frame = 0


Query: 1   MADQPGEPDSVIGKISEKIDALHSSASSDSDDDKPSKLDAAKSRVRRLFGREKPVYEVLG 60
           MADQPGEPDSVIGKISEKIDALHSS+SSDSDDDKPSKLDAAKSRVRRLFGREKPVYEVLG
Sbjct: 1   MADQPGEPDSVIGKISEKIDALHSSSSSDSDDDKPSKLDAAKSRVRRLFGREKPVYEVLG 60

Query: 61  GGKHADVFLWRNKKNSAGVLGGATALWILFELLEYQLITLVCHILILFLALIFVWSNANT 120
           GGKHADVFLWRNKKNSAGVLGGATALWILFELLE                          
Sbjct: 61  GGKHADVFLWRNKKNSAGVLGGATALWILFELLE-------------------------- 120

Query: 121 FINKSSPHIPEIRLNLDCLPEVANQLRIEINRVISTLRDIASGRDLKKFLSAFIGLWVLS 180
               SSPHIPEIRLNLDCLPEVANQLRIEINRVISTLRDIASGRDLKKFLSAFIGLWVLS
Sbjct: 121 ----SSPHIPEIRLNLDCLPEVANQLRIEINRVISTLRDIASGRDLKKFLSAFIGLWVLS 180

Query: 181 VVGSWFNFLTLVYICFVLLHTVPVLYEKYEDQVDPIAEKALIELKKQYAVFDAKVLSKIP 240
           VVGSWFNFLTLVYICFVLLHTVPVLYEKYEDQVDPIAEKALIELKKQYAVFDAKVLSKIP
Sbjct: 181 VVGSWFNFLTLVYICFVLLHTVPVLYEKYEDQVDPIAEKALIELKKQYAVFDAKVLSKIP 220

Query: 241 KGPLQQNKKD 251
           KGPLQQNKKD
Sbjct: 241 KGPLQQNKKD 220

[Close]

BLAST of MS000454 vs. NCBI nr
Match: XP_038878127.1 (reticulon-like protein B5 [Benincasa hispida])

HSP 1 Score: 384.8 bits (987), Expect = 5.7e-103
Identity = 202/250 (80.80%), Postives = 219/250 (87.60%), Query Frame = 0


Query: 1   MADQPGEPDSVIGKISEKIDALHSSASSDSDDDKPSKLDAAKSRVRRLFGREKPVYEVLG 60
           MADQPGEPDSVI KIS KI+   SS+SS SDDD+PSK+DA KS V RLFGR+KPV+ VLG
Sbjct: 1   MADQPGEPDSVIDKISGKINDHISSSSSGSDDDRPSKVDAVKSHVYRLFGRDKPVHSVLG 60

Query: 61  GGKHADVFLWRNKKNSAGVLGGATALWILFELLEYQLITLVCHILILFLALIFVWSNANT 120
           GGK ADVFLWRNKKNSAGVLGG TALW LFELLEYQLITLVCHILIL LA++F+WS ANT
Sbjct: 61  GGKPADVFLWRNKKNSAGVLGGVTALWFLFELLEYQLITLVCHILILLLAIVFLWSYANT 120

Query: 121 FINKSSPHIPEIRLNLDCLPEVANQLRIEINRVISTLRDIASGRDLKKFLSAFIGLWVLS 180
           FINK+ P IP+ R+  DCL EV + LRIEIN VISTLRDIA GRDLKKFLSAFIGLWVLS
Sbjct: 121 FINKTPPQIPDFRVPEDCLLEVVSSLRIEINHVISTLRDIAFGRDLKKFLSAFIGLWVLS 180

Query: 181 VVGSWFNFLTLVYICFVLLHTVPVLYEKYEDQVDPIAEKALIELKKQYAVFDAKVLSKIP 240
           +VG+W NFLTL+YI FVLLHTVPVLYEKYEDQVDPIAEKALIELKKQYAVFDAKVLSKIP
Sbjct: 181 IVGNWCNFLTLLYISFVLLHTVPVLYEKYEDQVDPIAEKALIELKKQYAVFDAKVLSKIP 240

Query: 241 KGPLQQNKKD 251
             PLQ  KK+
Sbjct: 241 MWPLQGKKKN 250

[Close]

BLAST of MS000454 vs. NCBI nr
Match: XP_004149448.1 (reticulon-like protein B1 [Cucumis sativus] >KGN57883.1 hypothetical protein Csa_010794 [Cucumis sativus])

HSP 1 Score: 384.0 bits (985), Expect = 9.7e-103
Identity = 196/250 (78.40%), Postives = 217/250 (86.80%), Query Frame = 0


Query: 1   MADQPGEPDSVIGKISEKIDALHSSASSDSDDDKPSKLDAAKSRVRRLFGREKPVYEVLG 60
           MADQP EPDSVI   S KID   SS+SSDSDDD PSK DA K  V RLFGR+KPV+ VLG
Sbjct: 1   MADQPAEPDSVIDNFSAKIDDHISSSSSDSDDDHPSKPDAVKCHVYRLFGRDKPVHTVLG 60

Query: 61  GGKHADVFLWRNKKNSAGVLGGATALWILFELLEYQLITLVCHILILFLALIFVWSNANT 120
           GGK ADVFLW+NKKNSAGVLGGATALWILFELLEYQLITLVCHILI+ LA+ F+WS ANT
Sbjct: 61  GGKPADVFLWKNKKNSAGVLGGATALWILFELLEYQLITLVCHILIILLAIPFLWSYANT 120

Query: 121 FINKSSPHIPEIRLNLDCLPEVANQLRIEINRVISTLRDIASGRDLKKFLSAFIGLWVLS 180
           FINK+ P IP++RL  DCL +V   LRIEINR+ISTLRD+ASGRDL+KFLSAF+GLW+LS
Sbjct: 121 FINKTPPQIPDVRLPEDCLLQVVTSLRIEINRIISTLRDVASGRDLRKFLSAFLGLWILS 180

Query: 181 VVGSWFNFLTLVYICFVLLHTVPVLYEKYEDQVDPIAEKALIELKKQYAVFDAKVLSKIP 240
           + GSW NFLTL+Y+CF+LLHTVPVLYEKYEDQVDP AEKALIELKKQYA FDAKVLSKIP
Sbjct: 181 IAGSWCNFLTLLYMCFILLHTVPVLYEKYEDQVDPFAEKALIELKKQYAEFDAKVLSKIP 240

Query: 241 KGPLQQNKKD 251
            GPLQ+ KKD
Sbjct: 241 LGPLQEKKKD 250

[Close]

BLAST of MS000454 vs. NCBI nr
Match: KAF3432910.1 (hypothetical protein FNV43_RR24012 [Rhamnella rubrinervis])

HSP 1 Score: 356.7 bits (914), Expect = 1.7e-94
Identity = 185/251 (73.71%), Postives = 213/251 (84.86%), Query Frame = 0


Query: 1   MADQPGEPDSVIGKISEKIDAL-HSSASSDSDDDKPSKLDAAKSRVRRLFGREKPVYEVL 60
           MA+  GEP+++I K++EKI +   SS+SSDSD++KPSK+D+ +S++ RLFGREKPV++VL
Sbjct: 1   MAEHAGEPETLIEKVTEKIHSHDSSSSSSDSDNEKPSKVDSIQSKIFRLFGREKPVHKVL 60

Query: 61  GGGKHADVFLWRNKKNSAGVLGGATALWILFELLEYQLITLVCHILILFLALIFVWSNAN 120
           GGGK ADVFLWRNKK S GVLGGATALWILFELLEY  ITLVCHILIL LAL+F+WSNA+
Sbjct: 61  GGGKPADVFLWRNKKISGGVLGGATALWILFELLEYHFITLVCHILILSLALLFLWSNAS 120

Query: 121 TFINKSSPHIPEIRLNLDCLPEVANQLRIEINRVISTLRDIASGRDLKKFLSAFIGLWVL 180
           TFINKS PHIPE++L   C+ EVA+ LR EIN   + LRDIASGRDL+KFL    GLWVL
Sbjct: 121 TFINKSPPHIPEVQLPEKCVLEVASALRAEINLAFAVLRDIASGRDLRKFLGVIAGLWVL 180

Query: 181 SVVGSWFNFLTLVYICFVLLHTVPVLYEKYEDQVDPIAEKALIELKKQYAVFDAKVLSKI 240
           SVVG W NFLTL YICFVLLHTVPVLYEKYEDQVD  AEKA IE+KKQYAVFDAKVLSKI
Sbjct: 181 SVVGKWCNFLTLFYICFVLLHTVPVLYEKYEDQVDSFAEKATIEIKKQYAVFDAKVLSKI 240

Query: 241 PKGPLQQNKKD 251
           PKGPL+  KKD
Sbjct: 241 PKGPLKDKKKD 251

[Close]

BLAST of MS000454 vs. ExPASy Swiss-Prot
Match: Q9SUR3 (Reticulon-like protein B1 OS=Arabidopsis thaliana OX=3702 GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 2.0e-79
Identity = 156/254 (61.42%), Postives = 199/254 (78.35%), Query Frame = 0


Query: 7   EPDSVIGKISEKI----DALHSSASSDSDDDK------PSKLDAAKSRVRRLFGREKPVY 66
           E +S++ KISEKI    D+  SS+SSD +D+K       S   + KS+V RLFGRE+PV+
Sbjct: 22  ERESLMDKISEKIHHGGDSSSSSSSSDDEDEKKKTKKPSSPSSSMKSKVYRLFGREQPVH 81

Query: 67  EVLGGGKHADVFLWRNKKNSAGVLGGATALWILFELLEYQLITLVCHILILFLALIFVWS 126
           +VLGGGK AD+F+W+NKK S GVLGGATA W++FEL+EY L+TL+CH++I+ LA++F+WS
Sbjct: 82  KVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWS 141

Query: 127 NANTFINKSSPHIPEIRLNLDCLPEVANQLRIEINRVISTLRDIASGRDLKKFLSAFIGL 186
           NA  FINKS P IPE+ +  + + ++A+ LRIEINR  S+LR+IASGRDLKKFL A  GL
Sbjct: 142 NATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGL 201

Query: 187 WVLSVVGSWFNFLTLVYICFVLLHTVPVLYEKYEDQVDPIAEKALIELKKQYAVFDAKVL 246
           WVLS++G  FNFLTL YI  VLL TVP+ Y+KYED+VDP+ EKA+IELKKQYAV D KVL
Sbjct: 202 WVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVL 261

Query: 247 SKIPKGPLQQNKKD 251
           SKIP GPL+  KKD
Sbjct: 262 SKIPLGPLKNKKKD 275

[Close]

BLAST of MS000454 vs. ExPASy Swiss-Prot
Match: O82352 (Reticulon-like protein B5 OS=Arabidopsis thaliana OX=3702 GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 2.5e-77
Identity = 149/241 (61.83%), Postives = 190/241 (78.84%), Query Frame = 0


Query: 9   DSVIGKISEKIDALHSSASSDSDDDKPSKLDAAKSRVRRLFGREKPVYEVLGGGKHADVF 68
           +S++ KISEKI    SS+SS+S+ +KP    A K+++ R+FGREKPV++VLGGGK ADVF
Sbjct: 13  ESLMEKISEKIHHHDSSSSSESEYEKPDSPSAVKAKIYRMFGREKPVHKVLGGGKPADVF 72

Query: 69  LWRNKKNSAGVLGGATALWILFELLEYQLITLVCHILILFLALIFVWSNANTFINKSSPH 128
           LWR+KK S  VLG ATA+W+LFEL+EY L++L+CHI IL L  +F+WSNA+T INK+SP 
Sbjct: 73  LWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQ 132

Query: 129 IPEIRLNLDCLPEVANQLRIEINRVISTLRDIASGRDLKKFLSAFIGLWVLSVVGSWFNF 188
           IPEI +  +    VA+ LR E+N+    LR IA GRDLKKFL   +GLW++SVVG+WFNF
Sbjct: 133 IPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNF 192

Query: 189 LTLVYICFVLLHTVPVLYEKYEDQVDPIAEKALIELKKQYAVFDAKVLSKIPKGPLQQNK 248
           LTLVYICFV+LHTVP+LYEK+ED+VDP+AEKA+ EL+KQY VFD KVLSKIP   L+   
Sbjct: 193 LTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEKVLSKIPIASLKAKA 252

Query: 249 K 250
           K
Sbjct: 253 K 253

[Close]

BLAST of MS000454 vs. ExPASy Swiss-Prot
Match: Q9SUT9 (Reticulon-like protein B2 OS=Arabidopsis thaliana OX=3702 GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 2.8e-76
Identity = 148/250 (59.20%), Postives = 194/250 (77.60%), Query Frame = 0


Query: 7   EPDSVIGKISEKIDALHSSASSDSDDDKPSKLDAA------KSRVRRLFGREKPVYEVLG 66
           E +S++ K+SEKI     S+SS S DD+  K  ++      KS+V RLFGRE+PV++VLG
Sbjct: 22  ERESLMEKLSEKIHHKGDSSSSSSSDDENEKKSSSSSPKSLKSKVYRLFGRERPVHKVLG 81

Query: 67  GGKHADVFLWRNKKNSAGVLGGATALWILFELLEYQLITLVCHILILFLALIFVWSNANT 126
           GGK AD+F+W++KK S GV GGAT  W+LFEL+EY L+TL+CH++I+ LA++F+WSNA  
Sbjct: 82  GGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATM 141

Query: 127 FINKSSPHIPEIRLNLDCLPEVANQLRIEINRVISTLRDIASGRDLKKFLSAFIGLWVLS 186
           FI+KS P IPE+ +  + L ++A+ LRIEINR IS+LR+IASGRD+KKFLSA  GLWVLS
Sbjct: 142 FIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLS 201

Query: 187 VVGSWFNFLTLVYICFVLLHTVPVLYEKYEDQVDPIAEKALIELKKQYAVFDAKVLSKIP 246
           ++G  ++FLTL YI  VLL TVP+ Y+KYED+VD   EKA+ ELKKQYAV DAKV SKIP
Sbjct: 202 ILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLDAKVFSKIP 261

Query: 247 KGPLQQNKKD 251
           +GPL+  KKD
Sbjct: 262 RGPLKDKKKD 271

[Close]

BLAST of MS000454 vs. ExPASy Swiss-Prot
Match: Q6DBN4 (Reticulon-like protein B6 OS=Arabidopsis thaliana OX=3702 GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 9.8e-74
Identity = 143/237 (60.34%), Postives = 183/237 (77.22%), Query Frame = 0


Query: 9   DSVIGKISEKIDALHSSASSDSDDDKPSKLDAAKSRVRRLFGREKPVYEVLGGGKHADVF 68
           +S++ KI++KI    SS+SSDS+ +KP    A K+++ RLFGREKPV++VLGGG  ADVF
Sbjct: 13  ESLMEKIADKIHDHDSSSSSDSEHEKPESPSALKAKIYRLFGREKPVHKVLGGGLPADVF 72

Query: 69  LWRNKKNSAGVLGGATALWILFELLEYQLITLVCHILILFLALIFVWSNANTFINKSSPH 128
           LWR+KK SA VLG ATA+W+LFEL+EY  ++LVCHILI  LA +F+ SNA+ F+NK+ P 
Sbjct: 73  LWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPK 132

Query: 129 IPEIRLNLDCLPEVANQLRIEINRVISTLRDIASGRDLKKFLSAFIGLWVLSVVGSWFNF 188
           IPEI +  +    + + LR E+N+    LR IA GRDLKKFL    GLW++SVVG+WFNF
Sbjct: 133 IPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNF 192

Query: 189 LTLVYICFVLLHTVPVLYEKYEDQVDPIAEKALIELKKQYAVFDAKVLSKIPKGPLQ 246
           LTLVYICFV+LHTVP+LYEK+ED+VDP+AEK L ELKK Y VFD KVLSK+P   L+
Sbjct: 193 LTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMVFDEKVLSKLPVASLK 249

[Close]

BLAST of MS000454 vs. ExPASy Swiss-Prot
Match: Q9SH59 (Reticulon-like protein B3 OS=Arabidopsis thaliana OX=3702 GN=RTNLB3 PE=2 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 2.0e-71
Identity = 154/255 (60.39%), Postives = 189/255 (74.12%), Query Frame = 0


Query: 1   MADQPGEPDSVIGKISEKIDAL--HSSASSDSDDDKPSKLDAAKSRVRRLFGREKPVYEV 60
           MA++    +S++ KISEKI      SS+SSDSDDDK S   + K+++ RLFGRE+P++++
Sbjct: 1   MAEEHKHEESIMEKISEKIHGHDDSSSSSSDSDDDKNSA--SLKTKIYRLFGREQPLHKL 60

Query: 61  LGGGKHADVFLWRNKKNSAGVLGGATALWILFELLEYQLITLVCHILILFLALIFVWSNA 120
            GGGK AD+FLWRNKK S GVLG AT  WILFELLEY L+TL  HI IL LA++F+WS+A
Sbjct: 61  FGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSA 120

Query: 121 NTFINKSSPHIPEIRLNLDCLPEVANQLRIEINRVISTLRDIASGRDLKKFLSAFIGLWV 180
           +TFI+KS  HIPE+ +  D + ++A+ LRIEINR  + LRDIASGRDLKKFL    GLWV
Sbjct: 121 STFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWV 180

Query: 181 LSVVGSWFNFLTLVYICFVLLHTVPVLYEKYEDQVDPIAEKALIELKKQYAVFDAKVL-- 240
           LS VGS  NFLTL+YI  VLL T+PVLYEKYED+VD   EKA+ E+KKQY  FD KVL  
Sbjct: 181 LSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFDVKVLSK 240

Query: 241 --SKIPKGPLQQNKK 250
             SKIPKG     KK
Sbjct: 241 VMSKIPKGAFAFIKK 253

[Close]

BLAST of MS000454 vs. ExPASy TrEMBL
Match: A0A6J1CGS9 (Reticulon-like protein OS=Momordica charantia OX=3673 GN=LOC111011386 PE=4 SV=1)

HSP 1 Score: 483.4 bits (1243), Expect = 5.7e-133
Identity = 249/250 (99.60%), Postives = 250/250 (100.00%), Query Frame = 0


Query: 1   MADQPGEPDSVIGKISEKIDALHSSASSDSDDDKPSKLDAAKSRVRRLFGREKPVYEVLG 60
           MADQPGEPDSVIGKISEKIDALHSS+SSDSDDDKPSKLDAAKSRVRRLFGREKPVYEVLG
Sbjct: 1   MADQPGEPDSVIGKISEKIDALHSSSSSDSDDDKPSKLDAAKSRVRRLFGREKPVYEVLG 60

Query: 61  GGKHADVFLWRNKKNSAGVLGGATALWILFELLEYQLITLVCHILILFLALIFVWSNANT 120
           GGKHADVFLWRNKKNSAGVLGGATALWILFELLEYQLITLVCHILILFLALIFVWSNANT
Sbjct: 61  GGKHADVFLWRNKKNSAGVLGGATALWILFELLEYQLITLVCHILILFLALIFVWSNANT 120

Query: 121 FINKSSPHIPEIRLNLDCLPEVANQLRIEINRVISTLRDIASGRDLKKFLSAFIGLWVLS 180
           FINKSSPHIPEIRLNLDCLPEVANQLRIEINRVISTLRDIASGRDLKKFLSAFIGLWVLS
Sbjct: 121 FINKSSPHIPEIRLNLDCLPEVANQLRIEINRVISTLRDIASGRDLKKFLSAFIGLWVLS 180

Query: 181 VVGSWFNFLTLVYICFVLLHTVPVLYEKYEDQVDPIAEKALIELKKQYAVFDAKVLSKIP 240
           VVGSWFNFLTLVYICFVLLHTVPVLYEKYEDQVDPIAEKALIELKKQYAVFDAKVLSKIP
Sbjct: 181 VVGSWFNFLTLVYICFVLLHTVPVLYEKYEDQVDPIAEKALIELKKQYAVFDAKVLSKIP 240

Query: 241 KGPLQQNKKD 251
           KGPLQQNKKD
Sbjct: 241 KGPLQQNKKD 250

[Close]

BLAST of MS000454 vs. ExPASy TrEMBL
Match: A0A6J1CG69 (Reticulon-like protein OS=Momordica charantia OX=3673 GN=LOC111011386 PE=4 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 1.6e-111
Identity = 219/250 (87.60%), Postives = 220/250 (88.00%), Query Frame = 0


Query: 1   MADQPGEPDSVIGKISEKIDALHSSASSDSDDDKPSKLDAAKSRVRRLFGREKPVYEVLG 60
           MADQPGEPDSVIGKISEKIDALHSS+SSDSDDDKPSKLDAAKSRVRRLFGREKPVYEVLG
Sbjct: 1   MADQPGEPDSVIGKISEKIDALHSSSSSDSDDDKPSKLDAAKSRVRRLFGREKPVYEVLG 60

Query: 61  GGKHADVFLWRNKKNSAGVLGGATALWILFELLEYQLITLVCHILILFLALIFVWSNANT 120
           GGKHADVFLWRNKKNSAGVLGGATALWILFELLE                          
Sbjct: 61  GGKHADVFLWRNKKNSAGVLGGATALWILFELLE-------------------------- 120

Query: 121 FINKSSPHIPEIRLNLDCLPEVANQLRIEINRVISTLRDIASGRDLKKFLSAFIGLWVLS 180
               SSPHIPEIRLNLDCLPEVANQLRIEINRVISTLRDIASGRDLKKFLSAFIGLWVLS
Sbjct: 121 ----SSPHIPEIRLNLDCLPEVANQLRIEINRVISTLRDIASGRDLKKFLSAFIGLWVLS 180

Query: 181 VVGSWFNFLTLVYICFVLLHTVPVLYEKYEDQVDPIAEKALIELKKQYAVFDAKVLSKIP 240
           VVGSWFNFLTLVYICFVLLHTVPVLYEKYEDQVDPIAEKALIELKKQYAVFDAKVLSKIP
Sbjct: 181 VVGSWFNFLTLVYICFVLLHTVPVLYEKYEDQVDPIAEKALIELKKQYAVFDAKVLSKIP 220

Query: 241 KGPLQQNKKD 251
           KGPLQQNKKD
Sbjct: 241 KGPLQQNKKD 220

[Close]

BLAST of MS000454 vs. ExPASy TrEMBL
Match: A0A0A0L7V4 (Reticulon-like protein OS=Cucumis sativus OX=3659 GN=Csa_3G363160 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 4.7e-103
Identity = 196/250 (78.40%), Postives = 217/250 (86.80%), Query Frame = 0


Query: 1   MADQPGEPDSVIGKISEKIDALHSSASSDSDDDKPSKLDAAKSRVRRLFGREKPVYEVLG 60
           MADQP EPDSVI   S KID   SS+SSDSDDD PSK DA K  V RLFGR+KPV+ VLG
Sbjct: 1   MADQPAEPDSVIDNFSAKIDDHISSSSSDSDDDHPSKPDAVKCHVYRLFGRDKPVHTVLG 60

Query: 61  GGKHADVFLWRNKKNSAGVLGGATALWILFELLEYQLITLVCHILILFLALIFVWSNANT 120
           GGK ADVFLW+NKKNSAGVLGGATALWILFELLEYQLITLVCHILI+ LA+ F+WS ANT
Sbjct: 61  GGKPADVFLWKNKKNSAGVLGGATALWILFELLEYQLITLVCHILIILLAIPFLWSYANT 120

Query: 121 FINKSSPHIPEIRLNLDCLPEVANQLRIEINRVISTLRDIASGRDLKKFLSAFIGLWVLS 180
           FINK+ P IP++RL  DCL +V   LRIEINR+ISTLRD+ASGRDL+KFLSAF+GLW+LS
Sbjct: 121 FINKTPPQIPDVRLPEDCLLQVVTSLRIEINRIISTLRDVASGRDLRKFLSAFLGLWILS 180

Query: 181 VVGSWFNFLTLVYICFVLLHTVPVLYEKYEDQVDPIAEKALIELKKQYAVFDAKVLSKIP 240
           + GSW NFLTL+Y+CF+LLHTVPVLYEKYEDQVDP AEKALIELKKQYA FDAKVLSKIP
Sbjct: 181 IAGSWCNFLTLLYMCFILLHTVPVLYEKYEDQVDPFAEKALIELKKQYAEFDAKVLSKIP 240

Query: 241 KGPLQQNKKD 251
            GPLQ+ KKD
Sbjct: 241 LGPLQEKKKD 250

[Close]

BLAST of MS000454 vs. ExPASy TrEMBL
Match: A0A6P3ZIT2 (Reticulon-like protein OS=Ziziphus jujuba OX=326968 GN=LOC107414659 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 3.0e-94
Identity = 181/250 (72.40%), Postives = 211/250 (84.40%), Query Frame = 0


Query: 1   MADQPGEPDSVIGKISEKIDALHSSASSDSDDDKPSKLDAAKSRVRRLFGREKPVYEVLG 60
           MA+  GE +S+I KI+EKI    SS+SSDSDD+KPSK+D+ +S++ RLFGRE+PV++VLG
Sbjct: 1   MAEHTGEKESLIEKITEKIHGRDSSSSSDSDDEKPSKVDSVQSKIFRLFGRERPVHKVLG 60

Query: 61  GGKHADVFLWRNKKNSAGVLGGATALWILFELLEYQLITLVCHILILFLALIFVWSNANT 120
           GGK ADVFLWRNKK S GVLGGAT LWILFELLEY  ITL+CH+LIL LAL+F+WSNA+T
Sbjct: 61  GGKPADVFLWRNKKISGGVLGGATLLWILFELLEYHFITLICHVLILSLALLFLWSNAST 120

Query: 121 FINKSSPHIPEIRLNLDCLPEVANQLRIEINRVISTLRDIASGRDLKKFLSAFIGLWVLS 180
           FINKS PHIPE++L   C+ EVA+ LRIE N+ ++ LRDIASGRDLKKFL    GLWVLS
Sbjct: 121 FINKSPPHIPEVQLPEKCVLEVASALRIEFNQALAVLRDIASGRDLKKFLGVIAGLWVLS 180

Query: 181 VVGSWFNFLTLVYICFVLLHTVPVLYEKYEDQVDPIAEKALIELKKQYAVFDAKVLSKIP 240
           VVG+W NFLTL YI FVLLHTVPV YEKYED VD  AEKA IE+KKQYAVFDAKVLSKIP
Sbjct: 181 VVGNWCNFLTLFYIGFVLLHTVPVFYEKYEDHVDKFAEKATIEIKKQYAVFDAKVLSKIP 240

Query: 241 KGPLQQNKKD 251
           KGPL++ KKD
Sbjct: 241 KGPLKEKKKD 250

[Close]

BLAST of MS000454 vs. ExPASy TrEMBL
Match: A0A6J1JBF9 (Reticulon-like protein OS=Cucurbita maxima OX=3661 GN=LOC111482938 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 2.6e-93
Identity = 189/250 (75.60%), Postives = 211/250 (84.40%), Query Frame = 0


Query: 1   MADQPGEPDSVIGKISEKIDALHSSASSDSDDDKPSKLDAAKSRVRRLFGREKPVYEVLG 60
           MADQPG  DSV  KIS KID  +SS+SS SDDD+PSK++A KS V RLFGR+KPV+ VLG
Sbjct: 1   MADQPGGLDSVTDKISGKIDGYNSSSSSGSDDDQPSKINAVKSHVFRLFGRDKPVHTVLG 60

Query: 61  GGKHADVFLWRNKKNSAGVLGGATALWILFELLEYQLITLVCHILILFLALIFVWSNANT 120
           GGK ADV LWRNKKNSAG+LGGATALWILFELLEYQLITL+CHILIL LAL+F  S A++
Sbjct: 61  GGKPADVLLWRNKKNSAGILGGATALWILFELLEYQLITLLCHILILVLALVFTRSYASS 120

Query: 121 FINKSSPHIPEIRLNLDCLPEVANQLRIEINRVISTLRDIASGRDLKKFLSAFIGLWVLS 180
           FINKS P IP+ RL  D L EV + LRIEIN VIS LR+IASGRDLKKFL AFIGLWVLS
Sbjct: 121 FINKSPPQIPDFRLPEDRLLEVVSALRIEINHVISNLRNIASGRDLKKFLRAFIGLWVLS 180

Query: 181 VVGSWFNFLTLVYICFVLLHTVPVLYEKYEDQVDPIAEKALIELKKQYAVFDAKVLSKIP 240
           +VGSW NFLTL+Y   VLLHTVPVLYEKY+DQVD  AEKALIE+KKQYAVF+A+VLSKIP
Sbjct: 181 MVGSWCNFLTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIEVKKQYAVFNAEVLSKIP 240

Query: 241 KGPLQQNKKD 251
            G LQ+ KKD
Sbjct: 241 MGALQEKKKD 250

[Close]

BLAST of MS000454 vs. TAIR 10
Match: AT4G23630.1 (VIRB2-interacting protein 1 )

HSP 1 Score: 297.0 bits (759), Expect = 1.4e-80
Identity = 156/254 (61.42%), Postives = 199/254 (78.35%), Query Frame = 0


Query: 7   EPDSVIGKISEKI----DALHSSASSDSDDDK------PSKLDAAKSRVRRLFGREKPVY 66
           E +S++ KISEKI    D+  SS+SSD +D+K       S   + KS+V RLFGRE+PV+
Sbjct: 22  ERESLMDKISEKIHHGGDSSSSSSSSDDEDEKKKTKKPSSPSSSMKSKVYRLFGREQPVH 81

Query: 67  EVLGGGKHADVFLWRNKKNSAGVLGGATALWILFELLEYQLITLVCHILILFLALIFVWS 126
           +VLGGGK AD+F+W+NKK S GVLGGATA W++FEL+EY L+TL+CH++I+ LA++F+WS
Sbjct: 82  KVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWS 141

Query: 127 NANTFINKSSPHIPEIRLNLDCLPEVANQLRIEINRVISTLRDIASGRDLKKFLSAFIGL 186
           NA  FINKS P IPE+ +  + + ++A+ LRIEINR  S+LR+IASGRDLKKFL A  GL
Sbjct: 142 NATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGL 201

Query: 187 WVLSVVGSWFNFLTLVYICFVLLHTVPVLYEKYEDQVDPIAEKALIELKKQYAVFDAKVL 246
           WVLS++G  FNFLTL YI  VLL TVP+ Y+KYED+VDP+ EKA+IELKKQYAV D KVL
Sbjct: 202 WVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVL 261

Query: 247 SKIPKGPLQQNKKD 251
           SKIP GPL+  KKD
Sbjct: 262 SKIPLGPLKNKKKD 275

[Close]

BLAST of MS000454 vs. TAIR 10
Match: AT2G46170.1 (Reticulon family protein )

HSP 1 Score: 290.0 bits (741), Expect = 1.8e-78
Identity = 149/241 (61.83%), Postives = 190/241 (78.84%), Query Frame = 0


Query: 9   DSVIGKISEKIDALHSSASSDSDDDKPSKLDAAKSRVRRLFGREKPVYEVLGGGKHADVF 68
           +S++ KISEKI    SS+SS+S+ +KP    A K+++ R+FGREKPV++VLGGGK ADVF
Sbjct: 13  ESLMEKISEKIHHHDSSSSSESEYEKPDSPSAVKAKIYRMFGREKPVHKVLGGGKPADVF 72

Query: 69  LWRNKKNSAGVLGGATALWILFELLEYQLITLVCHILILFLALIFVWSNANTFINKSSPH 128
           LWR+KK S  VLG ATA+W+LFEL+EY L++L+CHI IL L  +F+WSNA+T INK+SP 
Sbjct: 73  LWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQ 132

Query: 129 IPEIRLNLDCLPEVANQLRIEINRVISTLRDIASGRDLKKFLSAFIGLWVLSVVGSWFNF 188
           IPEI +  +    VA+ LR E+N+    LR IA GRDLKKFL   +GLW++SVVG+WFNF
Sbjct: 133 IPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNF 192

Query: 189 LTLVYICFVLLHTVPVLYEKYEDQVDPIAEKALIELKKQYAVFDAKVLSKIPKGPLQQNK 248
           LTLVYICFV+LHTVP+LYEK+ED+VDP+AEKA+ EL+KQY VFD KVLSKIP   L+   
Sbjct: 193 LTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEKVLSKIPIASLKAKA 252

Query: 249 K 250
           K
Sbjct: 253 K 253

[Close]

BLAST of MS000454 vs. TAIR 10
Match: AT4G11220.1 (VIRB2-interacting protein 2 )

HSP 1 Score: 286.6 bits (732), Expect = 2.0e-77
Identity = 148/250 (59.20%), Postives = 194/250 (77.60%), Query Frame = 0


Query: 7   EPDSVIGKISEKIDALHSSASSDSDDDKPSKLDAA------KSRVRRLFGREKPVYEVLG 66
           E +S++ K+SEKI     S+SS S DD+  K  ++      KS+V RLFGRE+PV++VLG
Sbjct: 22  ERESLMEKLSEKIHHKGDSSSSSSSDDENEKKSSSSSPKSLKSKVYRLFGRERPVHKVLG 81

Query: 67  GGKHADVFLWRNKKNSAGVLGGATALWILFELLEYQLITLVCHILILFLALIFVWSNANT 126
           GGK AD+F+W++KK S GV GGAT  W+LFEL+EY L+TL+CH++I+ LA++F+WSNA  
Sbjct: 82  GGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATM 141

Query: 127 FINKSSPHIPEIRLNLDCLPEVANQLRIEINRVISTLRDIASGRDLKKFLSAFIGLWVLS 186
           FI+KS P IPE+ +  + L ++A+ LRIEINR IS+LR+IASGRD+KKFLSA  GLWVLS
Sbjct: 142 FIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLS 201

Query: 187 VVGSWFNFLTLVYICFVLLHTVPVLYEKYEDQVDPIAEKALIELKKQYAVFDAKVLSKIP 246
           ++G  ++FLTL YI  VLL TVP+ Y+KYED+VD   EKA+ ELKKQYAV DAKV SKIP
Sbjct: 202 ILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLDAKVFSKIP 261

Query: 247 KGPLQQNKKD 251
           +GPL+  KKD
Sbjct: 262 RGPLKDKKKD 271

[Close]

BLAST of MS000454 vs. TAIR 10
Match: AT3G61560.1 (Reticulon family protein )

HSP 1 Score: 278.1 bits (710), Expect = 7.0e-75
Identity = 143/237 (60.34%), Postives = 183/237 (77.22%), Query Frame = 0


Query: 9   DSVIGKISEKIDALHSSASSDSDDDKPSKLDAAKSRVRRLFGREKPVYEVLGGGKHADVF 68
           +S++ KI++KI    SS+SSDS+ +KP    A K+++ RLFGREKPV++VLGGG  ADVF
Sbjct: 13  ESLMEKIADKIHDHDSSSSSDSEHEKPESPSALKAKIYRLFGREKPVHKVLGGGLPADVF 72

Query: 69  LWRNKKNSAGVLGGATALWILFELLEYQLITLVCHILILFLALIFVWSNANTFINKSSPH 128
           LWR+KK SA VLG ATA+W+LFEL+EY  ++LVCHILI  LA +F+ SNA+ F+NK+ P 
Sbjct: 73  LWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPK 132

Query: 129 IPEIRLNLDCLPEVANQLRIEINRVISTLRDIASGRDLKKFLSAFIGLWVLSVVGSWFNF 188
           IPEI +  +    + + LR E+N+    LR IA GRDLKKFL    GLW++SVVG+WFNF
Sbjct: 133 IPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNF 192

Query: 189 LTLVYICFVLLHTVPVLYEKYEDQVDPIAEKALIELKKQYAVFDAKVLSKIPKGPLQ 246
           LTLVYICFV+LHTVP+LYEK+ED+VDP+AEK L ELKK Y VFD KVLSK+P   L+
Sbjct: 193 LTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMVFDEKVLSKLPVASLK 249

[Close]

BLAST of MS000454 vs. TAIR 10
Match: AT1G64090.1 (Reticulan like protein B3 )

HSP 1 Score: 270.4 bits (690), Expect = 1.5e-72
Identity = 154/255 (60.39%), Postives = 189/255 (74.12%), Query Frame = 0


Query: 1   MADQPGEPDSVIGKISEKIDAL--HSSASSDSDDDKPSKLDAAKSRVRRLFGREKPVYEV 60
           MA++    +S++ KISEKI      SS+SSDSDDDK S   + K+++ RLFGRE+P++++
Sbjct: 1   MAEEHKHEESIMEKISEKIHGHDDSSSSSSDSDDDKNSA--SLKTKIYRLFGREQPLHKL 60

Query: 61  LGGGKHADVFLWRNKKNSAGVLGGATALWILFELLEYQLITLVCHILILFLALIFVWSNA 120
            GGGK AD+FLWRNKK S GVLG AT  WILFELLEY L+TL  HI IL LA++F+WS+A
Sbjct: 61  FGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSA 120

Query: 121 NTFINKSSPHIPEIRLNLDCLPEVANQLRIEINRVISTLRDIASGRDLKKFLSAFIGLWV 180
           +TFI+KS  HIPE+ +  D + ++A+ LRIEINR  + LRDIASGRDLKKFL    GLWV
Sbjct: 121 STFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWV 180

Query: 181 LSVVGSWFNFLTLVYICFVLLHTVPVLYEKYEDQVDPIAEKALIELKKQYAVFDAKVL-- 240
           LS VGS  NFLTL+YI  VLL T+PVLYEKYED+VD   EKA+ E+KKQY  FD KVL  
Sbjct: 181 LSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFDVKVLSK 240

Query: 241 --SKIPKGPLQQNKK 250
             SKIPKG     KK
Sbjct: 241 VMSKIPKGAFAFIKK 253

The following BLAST results are available for this feature:

BLAST of MS000454 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140804.1	1.2e-132	99.60	reticulon-like protein B1 isoform X1 [Momordica charantia]	[more]
XP_022140805.1	3.3e-111	87.60	reticulon-like protein B1 isoform X2 [Momordica charantia]	[more]
XP_038878127.1	5.7e-103	80.80	reticulon-like protein B5 [Benincasa hispida]	[more]
XP_004149448.1	9.7e-103	78.40	reticulon-like protein B1 [Cucumis sativus] >KGN57883.1 hypothetical protein Csa...	[more]
KAF3432910.1	1.7e-94	73.71	hypothetical protein FNV43_RR24012 [Rhamnella rubrinervis]	[more]

BLAST of MS000454 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SUR3	2.0e-79	61.42	Reticulon-like protein B1 OS=Arabidopsis thaliana OX=3702 GN=RTNLB1 PE=1 SV=1	[more]
O82352	2.5e-77	61.83	Reticulon-like protein B5 OS=Arabidopsis thaliana OX=3702 GN=RTNLB5 PE=1 SV=1	[more]
Q9SUT9	2.8e-76	59.20	Reticulon-like protein B2 OS=Arabidopsis thaliana OX=3702 GN=RTNLB2 PE=1 SV=1	[more]
Q6DBN4	9.8e-74	60.34	Reticulon-like protein B6 OS=Arabidopsis thaliana OX=3702 GN=RTNLB6 PE=1 SV=1	[more]
Q9SH59	2.0e-71	60.39	Reticulon-like protein B3 OS=Arabidopsis thaliana OX=3702 GN=RTNLB3 PE=2 SV=1	[more]

BLAST of MS000454 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CGS9	5.7e-133	99.60	Reticulon-like protein OS=Momordica charantia OX=3673 GN=LOC111011386 PE=4 SV=1	[more]
A0A6J1CG69	1.6e-111	87.60	Reticulon-like protein OS=Momordica charantia OX=3673 GN=LOC111011386 PE=4 SV=1	[more]
A0A0A0L7V4	4.7e-103	78.40	Reticulon-like protein OS=Cucumis sativus OX=3659 GN=Csa_3G363160 PE=4 SV=1	[more]
A0A6P3ZIT2	3.0e-94	72.40	Reticulon-like protein OS=Ziziphus jujuba OX=326968 GN=LOC107414659 PE=4 SV=1	[more]
A0A6J1JBF9	2.6e-93	75.60	Reticulon-like protein OS=Cucurbita maxima OX=3661 GN=LOC111482938 PE=4 SV=1	[more]

BLAST of MS000454 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23630.1	1.4e-80	61.42	VIRB2-interacting protein 1	[more]
AT2G46170.1	1.8e-78	61.83	Reticulon family protein	[more]
AT4G11220.1	2.0e-77	59.20	VIRB2-interacting protein 2	[more]
AT3G61560.1	7.0e-75	60.34	Reticulon family protein	[more]
AT1G64090.1	1.5e-72	60.39	Reticulan like protein B3	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003388	Reticulon	PFAM	PF02453	Reticulon	coord: 65..220 e-value: 5.1E-56 score: 189.0
IPR003388	Reticulon	PROSITE	PS50845	RETICULON	coord: 64..250 score: 47.76899
None	No IPR available	PANTHER	PTHR10994:SF158	RETICULON-LIKE PROTEIN	coord: 1..249
IPR045064	Reticulon-like protein, plant	PANTHER	PTHR10994	RETICULON	coord: 1..249

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000454.1	MS000454.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009617	response to bacterium