MS000444 (gene) Bitter gourd (TR) v1

Overview
NameMS000444
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionNAD(P)H-quinone oxidoreductase subunit H, chloroplastic
Locationscaffold44: 1704888 .. 1705013 (+)
RNA-Seq ExpressionMS000444
SyntenyMS000444
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGAAGGAGATTCATTAGCTTGTTATTTAGTCAGACTTGGTGAGATGACAGAATCCATAAAATTATTCAACCAGCTTTGGAAGGATTTCAGGAGGCCTTGTGAGAATTTAGAAATCATGATTTTT

mRNA sequence

AAAGAAGGAGATTCATTAGCTTGTTATTTAGTCAGACTTGGTGAGATGACAGAATCCATAAAATTATTCAACCAGCTTTGGAAGGATTTCAGGAGGCCTTGTGAGAATTTAGAAATCATGATTTTT

Coding sequence (CDS)

AAAGAAGGAGATTCATTAGCTTGTTATTTAGTCAGACTTGGTGAGATGACAGAATCCATAAAATTATTCAACCAGCTTTGGAAGGATTTCAGGAGGCCTTGTGAGAATTTAGAAATCATGATTTTT

Protein sequence

KEGDSLACYLVRLGEMTESIKLFNQLWKDFRRPCENLEIMIF
Homology
BLAST of MS000444 vs. NCBI nr
Match: VVW84306.1 (unnamed protein product, partial [Nymphaea colorata])

HSP 1 Score: 70.1 bits (170), Expect = 5.2e-09
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 0

Query: 1  KEGDSLACYLVRLGEMTESIKLFNQLWKDFRRPCENLE 39
          KEGDSLA YLVR+GEMTESIKLFN+LWK+FR P ENLE
Sbjct: 4  KEGDSLARYLVRIGEMTESIKLFNRLWKEFRGPYENLE 41

BLAST of MS000444 vs. NCBI nr
Match: KCW83962.1 (hypothetical protein EUGRSUZ_B00847 [Eucalyptus grandis])

HSP 1 Score: 58.9 bits (141), Expect = 1.2e-05
Identity = 29/42 (69.05%), Postives = 32/42 (76.19%), Query Frame = 0

Query: 1   KEGDSLACYLVRLGEMTESIKLFNQLWKDFRRPCENLEIMIF 43
           KEGDSLA YLVR+GEM ESIKLFN+LW+    P ENLE   F
Sbjct: 165 KEGDSLARYLVRIGEMRESIKLFNKLWRIPGGPYENLETRCF 206

BLAST of MS000444 vs. NCBI nr
Match: QXI85246.1 (NADH-plastoquinone oxidoreductase subunit 7 [Sinogentiana striata])

HSP 1 Score: 53.5 bits (127), Expect = 5.0e-04
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 0

Query: 1   KEGDSLACYLVRLGEMTESIKLFNQLWKDF-RRPCENLEIMIF 43
           KEGDSLA YLVR+GEMTES+K+  Q+ +     PCENLEI  F
Sbjct: 253 KEGDSLARYLVRIGEMTESVKIIQQVLEGLPGGPCENLEIRRF 295

BLAST of MS000444 vs. NCBI nr
Match: QXI84922.1 (NADH-plastoquinone oxidoreductase subunit 7 [Crawfurdia poilanei] >QXI86450.1 NADH-plastoquinone oxidoreductase subunit 7 [Crawfurdia campanulacea])

HSP 1 Score: 53.5 bits (127), Expect = 5.0e-04
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 0

Query: 1   KEGDSLACYLVRLGEMTESIKLFNQLWKDF-RRPCENLEIMIF 43
           KEGDSLA YLVR+GEMTES+K+  Q+ +     PCENLEI  F
Sbjct: 253 KEGDSLARYLVRIGEMTESVKIIQQVLEGLPGGPCENLEIRRF 295

BLAST of MS000444 vs. NCBI nr
Match: YP_009972280.1 (NADH dehydrogenase subunit H [Tripterospermum membranaceum] >QNH70775.1 NADH dehydrogenase subunit H [Tripterospermum membranaceum] >QXI84421.1 NADH-plastoquinone oxidoreductase subunit 7 [Tripterospermum championii] >QXI84839.1 NADH-plastoquinone oxidoreductase subunit 7 [Tripterospermum luteoviride])

HSP 1 Score: 53.5 bits (127), Expect = 5.0e-04
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 0

Query: 1   KEGDSLACYLVRLGEMTESIKLFNQLWKDF-RRPCENLEIMIF 43
           KEGDSLA YLVR+GEMTES+K+  Q+ +     PCENLEI  F
Sbjct: 253 KEGDSLARYLVRIGEMTESVKIIQQVLEGLPGGPCENLEIRRF 295

BLAST of MS000444 vs. ExPASy Swiss-Prot
Match: Q09WW2 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Morus indica OX=248361 GN=ndhH PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 9.5e-06
Identity = 27/43 (62.79%), Postives = 30/43 (69.77%), Query Frame = 0

Query: 1   KEGDSLACYLVRLGEMTESIKLFNQLWKDF-RRPCENLEIMIF 43
           KEGDSLA YLVR+GEMTESIK+  Q  +     P ENLEI  F
Sbjct: 253 KEGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLEIRYF 295

BLAST of MS000444 vs. ExPASy Swiss-Prot
Match: Q09MC0 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Citrus sinensis OX=2711 GN=ndhH PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.2e-05
Identity = 26/43 (60.47%), Postives = 30/43 (69.77%), Query Frame = 0

Query: 1   KEGDSLACYLVRLGEMTESIKLFNQLWKDF-RRPCENLEIMIF 43
           KEGDSLA YLVR+GEMTES+K+  Q  +     P ENLEI  F
Sbjct: 255 KEGDSLARYLVRIGEMTESVKIIQQALEGIPGGPYENLEIRCF 297

BLAST of MS000444 vs. ExPASy Swiss-Prot
Match: A6MN01 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Illicium oligandrum OX=145286 GN=ndhH PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 2.1e-05
Identity = 26/43 (60.47%), Postives = 30/43 (69.77%), Query Frame = 0

Query: 1   KEGDSLACYLVRLGEMTESIKLFNQLWKDF-RRPCENLEIMIF 43
           KEGDSLA YLVR+GEMTESIK+  Q  +     P ENLE+  F
Sbjct: 253 KEGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLEVRRF 295

BLAST of MS000444 vs. ExPASy Swiss-Prot
Match: A6MMQ7 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Dioscorea elephantipes OX=145284 GN=ndhH PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 2.8e-05
Identity = 26/43 (60.47%), Postives = 30/43 (69.77%), Query Frame = 0

Query: 1   KEGDSLACYLVRLGEMTESIKLFNQLWKDF-RRPCENLEIMIF 43
           KEGDSLA YLVR+GEMTESIK+  Q  +     P ENLE+  F
Sbjct: 253 KEGDSLARYLVRIGEMTESIKIIQQAIEGIPGGPYENLEVRRF 295

BLAST of MS000444 vs. ExPASy Swiss-Prot
Match: Q8S8U4 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Atropa belladonna OX=33113 GN=ndhH PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 3.6e-05
Identity = 26/43 (60.47%), Postives = 30/43 (69.77%), Query Frame = 0

Query: 1   KEGDSLACYLVRLGEMTESIKLFNQLWKDF-RRPCENLEIMIF 43
           +EGDSLA YLVR+GEMTESIK+  Q  +     P ENLEI  F
Sbjct: 253 REGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLEIRRF 295

BLAST of MS000444 vs. ExPASy TrEMBL
Match: A0A5K1H9A3 (Complex1_49kDa domain-containing protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS28951 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.5e-09
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 0

Query: 1  KEGDSLACYLVRLGEMTESIKLFNQLWKDFRRPCENLE 39
          KEGDSLA YLVR+GEMTESIKLFN+LWK+FR P ENLE
Sbjct: 4  KEGDSLARYLVRIGEMTESIKLFNRLWKEFRGPYENLE 41

BLAST of MS000444 vs. ExPASy TrEMBL
Match: A0A059D064 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B00847 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.8e-06
Identity = 29/42 (69.05%), Postives = 32/42 (76.19%), Query Frame = 0

Query: 1   KEGDSLACYLVRLGEMTESIKLFNQLWKDFRRPCENLEIMIF 43
           KEGDSLA YLVR+GEM ESIKLFN+LW+    P ENLE   F
Sbjct: 165 KEGDSLARYLVRIGEMRESIKLFNKLWRIPGGPYENLETRCF 206

BLAST of MS000444 vs. ExPASy TrEMBL
Match: A0A191VR29 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Dactyladenia buchneri OX=1856786 GN=ndhH PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.4e-04
Identity = 27/43 (62.79%), Postives = 31/43 (72.09%), Query Frame = 0

Query: 1   KEGDSLACYLVRLGEMTESIKLFNQLWKDF-RRPCENLEIMIF 43
           KEGDSLA YLVR+GEMTESIK+  Q  +     PCENLE+  F
Sbjct: 253 KEGDSLARYLVRIGEMTESIKIIQQALEGIPGGPCENLEVRCF 295

BLAST of MS000444 vs. ExPASy TrEMBL
Match: A0A7G7WUP9 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Tripterospermum membranaceum OX=1608371 GN=ndhH PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.4e-04
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 0

Query: 1   KEGDSLACYLVRLGEMTESIKLFNQLWKDF-RRPCENLEIMIF 43
           KEGDSLA YLVR+GEMTES+K+  Q+ +     PCENLEI  F
Sbjct: 253 KEGDSLARYLVRIGEMTESVKIIQQVLEGLPGGPCENLEIRRF 295

BLAST of MS000444 vs. ExPASy TrEMBL
Match: A0A411PVG2 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Carya illinoinensis OX=32201 GN=ndhH PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.2e-04
Identity = 27/43 (62.79%), Postives = 31/43 (72.09%), Query Frame = 0

Query: 1   KEGDSLACYLVRLGEMTESIKLFNQLWKDF-RRPCENLEIMIF 43
           KEGDSLA YLVR+GEMTESIK+  Q  +     PCENLE+  F
Sbjct: 253 KEGDSLARYLVRIGEMTESIKIIQQALEGIPGGPCENLELRYF 295

BLAST of MS000444 vs. TAIR 10
Match: ATCG01110.1 (NAD(P)H dehydrogenase subunit H )

HSP 1 Score: 44.3 bits (103), Expect = 2.8e-05
Identity = 24/39 (61.54%), Postives = 27/39 (69.23%), Query Frame = 0

Query: 1   KEGDSLACYLVRLGEMTESIKLFNQLWKDF-RRPCENLE 39
           K+GDSLA YLVRL EMTESIK+  Q  +     P ENLE
Sbjct: 253 KQGDSLARYLVRLSEMTESIKIIQQALEGLPGGPYENLE 291

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
VVW84306.15.2e-0984.21unnamed protein product, partial [Nymphaea colorata][more]
KCW83962.11.2e-0569.05hypothetical protein EUGRSUZ_B00847 [Eucalyptus grandis][more]
QXI85246.15.0e-0462.79NADH-plastoquinone oxidoreductase subunit 7 [Sinogentiana striata][more]
QXI84922.15.0e-0462.79NADH-plastoquinone oxidoreductase subunit 7 [Crawfurdia poilanei] >QXI86450.1 NA... [more]
YP_009972280.15.0e-0462.79NADH dehydrogenase subunit H [Tripterospermum membranaceum] >QNH70775.1 NADH deh... [more]
Match NameE-valueIdentityDescription
Q09WW29.5e-0662.79NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Morus indica OX=24836... [more]
Q09MC01.2e-0560.47NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Citrus sinensis OX=27... [more]
A6MN012.1e-0560.47NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Illicium oligandrum O... [more]
A6MMQ72.8e-0560.47NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Dioscorea elephantipe... [more]
Q8S8U43.6e-0560.47NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Atropa belladonna OX=... [more]
Match NameE-valueIdentityDescription
A0A5K1H9A32.5e-0984.21Complex1_49kDa domain-containing protein (Fragment) OS=Nymphaea colorata OX=2102... [more]
A0A059D0645.8e-0669.05Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B00847 PE=3 SV... [more]
A0A191VR292.4e-0462.79NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Dactyladenia buchneri... [more]
A0A7G7WUP92.4e-0462.79NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Tripterospermum membr... [more]
A0A411PVG23.2e-0462.79NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Carya illinoinensis O... [more]
Match NameE-valueIdentityDescription
ATCG01110.12.8e-0561.54NAD(P)H dehydrogenase subunit H [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS000444.1MS000444.1mRNA