MS000402 (gene) Bitter gourd (TR) v1

Overview
NameMS000402
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRemorin_C domain-containing protein
Locationscaffold44: 1455399 .. 1455584 (-)
RNA-Seq ExpressionMS000402
SyntenyMS000402
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGATGAAGCAGGAGGAATTTGAAAGGGTAAGAAATAAAGTACTAGACGCACATATAGCAACAGAATCAAAGAAAGCAAACATTGAGGTTGAGAGAAATCGTCAAAAACAGAAGATTGAAGAGAAAGCTGTTCAACATCGCTCTGCCAATACAATTCCATCCAAGTTTTTTGGCATTTTCAAAGAC

mRNA sequence

AAGATGAAGCAGGAGGAATTTGAAAGGGTAAGAAATAAAGTACTAGACGCACATATAGCAACAGAATCAAAGAAAGCAAACATTGAGGTTGAGAGAAATCGTCAAAAACAGAAGATTGAAGAGAAAGCTGTTCAACATCGCTCTGCCAATACAATTCCATCCAAGTTTTTTGGCATTTTCAAAGAC

Coding sequence (CDS)

AAGATGAAGCAGGAGGAATTTGAAAGGGTAAGAAATAAAGTACTAGACGCACATATAGCAACAGAATCAAAGAAAGCAAACATTGAGGTTGAGAGAAATCGTCAAAAACAGAAGATTGAAGAGAAAGCTGTTCAACATCGCTCTGCCAATACAATTCCATCCAAGTTTTTTGGCATTTTCAAAGAC

Protein sequence

KMKQEEFERVRNKVLDAHIATESKKANIEVERNRQKQKIEEKAVQHRSANTIPSKFFGIFKD
Homology
BLAST of MS000402 vs. NCBI nr
Match: KAA0033641.1 (remorin-like [Cucumis melo var. makuwa] >TYK22940.1 remorin-like [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 2.7e-06
Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 0

Query: 1  KMKQEEFERVRNKVLDAHIATESKKANIEVERNRQKQKIEEKAVQHRSANTIPSKFFGIF 60
          K++ +E E+V+NK  + H A ESKKA+IE +R  +K K+E++A  HR  NT+P K FGI 
Sbjct: 11 KLRLKEMEKVKNKEAETHKAVESKKASIEAKRELRKLKVEDRAKMHRCTNTVPKKCFGIC 70

Query: 61 KD 63
           D
Sbjct: 71 ND 72

BLAST of MS000402 vs. NCBI nr
Match: KGN57373.1 (hypothetical protein Csa_010046 [Cucumis sativus])

HSP 1 Score: 57.4 bits (137), Expect = 5.1e-05
Identity = 30/62 (48.39%), Postives = 40/62 (64.52%), Query Frame = 0

Query: 1   KMKQEEFERVRNKVLDAHIATESKKANIEVERNRQKQKIEEKAVQHRSANTIPSKFFGIF 60
           K++    E+V+NK  + H A ESKKA+IE +R  +K K+E KA  HR  NT+P K FGI 
Sbjct: 65  KLRLRGMEKVKNKEAETHKAVESKKASIEAKRELKKLKVEGKAKVHRCTNTVPKKCFGIC 124

Query: 61  KD 63
            D
Sbjct: 125 ND 126

BLAST of MS000402 vs. ExPASy TrEMBL
Match: A0A5D3DHT0 (Remorin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G00180 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.3e-06
Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 0

Query: 1  KMKQEEFERVRNKVLDAHIATESKKANIEVERNRQKQKIEEKAVQHRSANTIPSKFFGIF 60
          K++ +E E+V+NK  + H A ESKKA+IE +R  +K K+E++A  HR  NT+P K FGI 
Sbjct: 11 KLRLKEMEKVKNKEAETHKAVESKKASIEAKRELRKLKVEDRAKMHRCTNTVPKKCFGIC 70

Query: 61 KD 63
           D
Sbjct: 71 ND 72

BLAST of MS000402 vs. ExPASy TrEMBL
Match: A0A0A0L6I9 (Remorin_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G182090 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.5e-05
Identity = 30/62 (48.39%), Postives = 40/62 (64.52%), Query Frame = 0

Query: 1   KMKQEEFERVRNKVLDAHIATESKKANIEVERNRQKQKIEEKAVQHRSANTIPSKFFGIF 60
           K++    E+V+NK  + H A ESKKA+IE +R  +K K+E KA  HR  NT+P K FGI 
Sbjct: 65  KLRLRGMEKVKNKEAETHKAVESKKASIEAKRELKKLKVEGKAKVHRCTNTVPKKCFGIC 124

Query: 61  KD 63
            D
Sbjct: 125 ND 126

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0033641.12.7e-0648.39remorin-like [Cucumis melo var. makuwa] >TYK22940.1 remorin-like [Cucumis melo v... [more]
KGN57373.15.1e-0548.39hypothetical protein Csa_010046 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DHT01.3e-0648.39Remorin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G00180 P... [more]
A0A0A0L6I92.5e-0548.39Remorin_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G182090 P... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 25..45

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS000402.1MS000402.1mRNA