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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. AAGATGAAGCAGGAGGAATTTGAAAGGGTAAGAAATAAAGTACTAGACGCACATATAGCAACAGAATCAAAGAAAGCAAACATTGAGGTTGAGAGAAATCGTCAAAAACAGAAGATTGAAGAGAAAGCTGTTCAACATCGCTCTGCCAATACAATTCCATCCAAGTTTTTTGGCATTTTCAAAGAC mRNA sequence AAGATGAAGCAGGAGGAATTTGAAAGGGTAAGAAATAAAGTACTAGACGCACATATAGCAACAGAATCAAAGAAAGCAAACATTGAGGTTGAGAGAAATCGTCAAAAACAGAAGATTGAAGAGAAAGCTGTTCAACATCGCTCTGCCAATACAATTCCATCCAAGTTTTTTGGCATTTTCAAAGAC Coding sequence (CDS) AAGATGAAGCAGGAGGAATTTGAAAGGGTAAGAAATAAAGTACTAGACGCACATATAGCAACAGAATCAAAGAAAGCAAACATTGAGGTTGAGAGAAATCGTCAAAAACAGAAGATTGAAGAGAAAGCTGTTCAACATCGCTCTGCCAATACAATTCCATCCAAGTTTTTTGGCATTTTCAAAGAC Protein sequence KMKQEEFERVRNKVLDAHIATESKKANIEVERNRQKQKIEEKAVQHRSANTIPSKFFGIFKD
Homology
BLAST of MS000402 vs. NCBI nr
Match: KAA0033641.1 (remorin-like [Cucumis melo var. makuwa] >TYK22940.1 remorin-like [Cucumis melo var. makuwa]) HSP 1 Score: 61.6 bits (148), Expect = 2.7e-06 Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 0
Query: 1 KMKQEEFERVRNKVLDAHIATESKKANIEVERNRQKQKIEEKAVQHRSANTIPSKFFGIF 60
K++ +E E+V+NK + H A ESKKA+IE +R +K K+E++A HR NT+P K FGI
Sbjct: 11 KLRLKEMEKVKNKEAETHKAVESKKASIEAKRELRKLKVEDRAKMHRCTNTVPKKCFGIC 70
Query: 61 KD 63
D
Sbjct: 71 ND 72
BLAST of MS000402 vs. NCBI nr
Match: KGN57373.1 (hypothetical protein Csa_010046 [Cucumis sativus]) HSP 1 Score: 57.4 bits (137), Expect = 5.1e-05 Identity = 30/62 (48.39%), Postives = 40/62 (64.52%), Query Frame = 0
Query: 1 KMKQEEFERVRNKVLDAHIATESKKANIEVERNRQKQKIEEKAVQHRSANTIPSKFFGIF 60
K++ E+V+NK + H A ESKKA+IE +R +K K+E KA HR NT+P K FGI
Sbjct: 65 KLRLRGMEKVKNKEAETHKAVESKKASIEAKRELKKLKVEGKAKVHRCTNTVPKKCFGIC 124
Query: 61 KD 63
D
Sbjct: 125 ND 126
BLAST of MS000402 vs. ExPASy TrEMBL
Match: A0A5D3DHT0 (Remorin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G00180 PE=4 SV=1) HSP 1 Score: 61.6 bits (148), Expect = 1.3e-06 Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 0
Query: 1 KMKQEEFERVRNKVLDAHIATESKKANIEVERNRQKQKIEEKAVQHRSANTIPSKFFGIF 60
K++ +E E+V+NK + H A ESKKA+IE +R +K K+E++A HR NT+P K FGI
Sbjct: 11 KLRLKEMEKVKNKEAETHKAVESKKASIEAKRELRKLKVEDRAKMHRCTNTVPKKCFGIC 70
Query: 61 KD 63
D
Sbjct: 71 ND 72
BLAST of MS000402 vs. ExPASy TrEMBL
Match: A0A0A0L6I9 (Remorin_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G182090 PE=3 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 2.5e-05 Identity = 30/62 (48.39%), Postives = 40/62 (64.52%), Query Frame = 0
Query: 1 KMKQEEFERVRNKVLDAHIATESKKANIEVERNRQKQKIEEKAVQHRSANTIPSKFFGIF 60
K++ E+V+NK + H A ESKKA+IE +R +K K+E KA HR NT+P K FGI
Sbjct: 65 KLRLRGMEKVKNKEAETHKAVESKKASIEAKRELKKLKVEGKAKVHRCTNTVPKKCFGIC 124
Query: 61 KD 63
D
Sbjct: 125 ND 126
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0033641.1 | 2.7e-06 | 48.39 | remorin-like [Cucumis melo var. makuwa] >TYK22940.1 remorin-like [Cucumis melo v... | [more] |
| KGN57373.1 | 5.1e-05 | 48.39 | hypothetical protein Csa_010046 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3DHT0 | 1.3e-06 | 48.39 | Remorin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G00180 P... | [more] |
| A0A0A0L6I9 | 2.5e-05 | 48.39 | Remorin_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G182090 P... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 25..45 |
Relationships
The following mRNA feature(s) are a part of this gene:
| Feature Name | Unique Name | Type |
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| MS000402.1 | MS000402.1 | mRNA |
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