MS000379 (gene) Bitter gourd (TR) v1

Overview


Name	MS000379
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	LOB domain-containing protein
Location	scaffold44: 1297412 .. 1298117 (+)
RNA-Seq Expression	MS000379
Synteny	MS000379

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTCGGGTCGCTGTGCAGCTTGCAAGTATCTCAGAAGAAGATGTCCTTCGGATTGCATTTTTTCCCCTTTCTTTCCTTCCAATAACCCTCAAAGATTTGCCACTGTTCATACAATCTATGGAGCCAGTAATGTTGCTAAATTCCTTCGTGTAAGTTCCATATTTTAATTAATTCACTATCATTTTTATTTTTTCCTTATGCTTTAAACTTAGCTAGTTTTTGCTATTCACATAATTAAATTACCAACCGCTATAAGTTTCTCTGTTAGCACAATTCATGTAATTTTCGGGTATTTTATTTACTTTTACCAACTTTTCTTTCAACGTGAAATAATAGAGAATTGACTCTTTTTTTTTTTTTTTTCCTTTTCTCTTTTTGCTAATTTAATCAGCAACTTCCTATGCATCTCCGAGCTGAGGCAGCAGAAACTTTATTTTTTGAGGCAAAGTGCAGAATTGAAGACCCAGTTTATGGGTGCGTTGGGATTATTTCTCAATTACAACATCAATTACACGTGGCGGAAACCCAGCTGGCCAAAACTCGGGCTGAGATTGCTTTTCTGAGTTCCAATGTCCAAGAAGCCAGACCCATGCCCAATATACTGTAACTGAGCCCATCCAAGGCCCAATTAGTATTGGGTTTTCTCAGATTGGGCTTTCCACTCAGCCCATTGGTTTAACTCCAGCTTTCCCAATTCCTAAC

mRNA sequence

ATGATTTCGGGTCGCTGTGCAGCTTGCAAGTATCTCAGAAGAAGATGTCCTTCGGATTGCATTTTTTCCCCTTTCTTTCCTTCCAATAACCCTCAAAGATTTGCCACTGTTCATACAATCTATGGAGCCAGTAATGTTGCTAAATTCCTTCGTCAACTTCCTATGCATCTCCGAGCTGAGGCAGCAGAAACTTTATTTTTTGAGGCAAAGTGCAGAATTGAAGACCCAGTTTATGGGTGCGTTGGGATTATTTCTCAATTACAACATCAATTACACGTGGCGGAAACCCAGCTGGCCAAAACTCGGGCTGAGATTGCTTTTCTGAGTTCCAATGTCCAAGAAGCCAGACCCATGCCCAATACTGTAACTGAGCCCATCCAAGGCCCAATTAGTATTGGGTTTTCTCAGATTGGGCTTTCCACTCAGCCCATTGGTTTAACTCCAGCTTTCCCAATTCCTAAC

Coding sequence (CDS)

ATGATTTCGGGTCGCTGTGCAGCTTGCAAGTATCTCAGAAGAAGATGTCCTTCGGATTGCATTTTTTCCCCTTTCTTTCCTTCCAATAACCCTCAAAGATTTGCCACTGTTCATACAATCTATGGAGCCAGTAATGTTGCTAAATTCCTTCGTCAACTTCCTATGCATCTCCGAGCTGAGGCAGCAGAAACTTTATTTTTTGAGGCAAAGTGCAGAATTGAAGACCCAGTTTATGGGTGCGTTGGGATTATTTCTCAATTACAACATCAATTACACGTGGCGGAAACCCAGCTGGCCAAAACTCGGGCTGAGATTGCTTTTCTGAGTTCCAATGTCCAAGAAGCCAGACCCATGCCCAATACTGTAACTGAGCCCATCCAAGGCCCAATTAGTATTGGGTTTTCTCAGATTGGGCTTTCCACTCAGCCCATTGGTTTAACTCCAGCTTTCCCAATTCCTAAC

Protein sequence

MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFATVHTIYGASNVAKFLRQLPMHLRAEAAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLSSNVQEARPMPNTVTEPIQGPISIGFSQIGLSTQPIGLTPAFPIPN

Homology

[Close]

BLAST of MS000379 vs. NCBI nr
Match: XP_023522202.1 (LOB domain-containing protein 24-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 253.8 bits (647), Expect = 9.3e-64
Identity = 125/141 (88.65%), Postives = 131/141 (92.91%), Query Frame = 0


Query: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFATVHTIYGASNVAKFLRQLPMHLRAE 60
           MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFA VH IYGASNVAKFL QLP+HLR E
Sbjct: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFAIVHRIYGASNVAKFLHQLPLHLRPE 60

Query: 61  AAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLSSNVQEARPMPN 120
           AAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFL+SN+QEA+P   
Sbjct: 61  AAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLASNLQEAQPQDF 120

Query: 121 TVTEPIQGPISIGFSQIGLST 142
            V +PIQGP +IGFSQIGLST
Sbjct: 121 AV-QPIQGPNTIGFSQIGLST 140

[Close]

BLAST of MS000379 vs. NCBI nr
Match: XP_022985104.1 (LOB domain-containing protein 24-like [Cucurbita maxima])

HSP 1 Score: 251.9 bits (642), Expect = 3.5e-63
Identity = 127/142 (89.44%), Postives = 132/142 (92.96%), Query Frame = 0


Query: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFATVHTIYGASNVAKFLRQLPMHLRAE 60
           MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFA VH IYGASNVAKFL QLP+HLRAE
Sbjct: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFAIVHRIYGASNVAKFLHQLPVHLRAE 60

Query: 61  AAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLSSNV-QEARPMP 120
           AAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFL+SN+ QEA+P  
Sbjct: 61  AAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLASNLHQEAQPQD 120

Query: 121 NTVTEPIQGPISIGFSQIGLST 142
             V EPIQGP +IGFSQIGLST
Sbjct: 121 FAV-EPIQGPNTIGFSQIGLST 141

[Close]

BLAST of MS000379 vs. NCBI nr
Match: KAG7014789.1 (LOB domain-containing protein 24, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 248.8 bits (634), Expect = 3.0e-62
Identity = 122/141 (86.52%), Postives = 131/141 (92.91%), Query Frame = 0


Query: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFATVHTIYGASNVAKFLRQLPMHLRAE 60
           MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFA VH IYGASNVAKFL QLP+HLR E
Sbjct: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFAIVHRIYGASNVAKFLHQLPVHLRPE 60

Query: 61  AAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLSSNVQEARPMPN 120
           AAE+LFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFL+SN+QEA+ + +
Sbjct: 61  AAESLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLASNLQEAQ-LHD 120

Query: 121 TVTEPIQGPISIGFSQIGLST 142
              +PIQGP +IGFSQIGLST
Sbjct: 121 FAVQPIQGPNTIGFSQIGLST 140

[Close]

BLAST of MS000379 vs. NCBI nr
Match: XP_022923144.1 (LOB domain-containing protein 24-like [Cucurbita moschata])

HSP 1 Score: 248.1 bits (632), Expect = 5.1e-62
Identity = 122/141 (86.52%), Postives = 130/141 (92.20%), Query Frame = 0


Query: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFATVHTIYGASNVAKFLRQLPMHLRAE 60
           MISGRCAACKYLRRRC SDCIFSPFFPSNNPQRFA VH IYGASNVAKFL QLP+HLR E
Sbjct: 1   MISGRCAACKYLRRRCASDCIFSPFFPSNNPQRFAIVHRIYGASNVAKFLHQLPLHLRPE 60

Query: 61  AAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLSSNVQEARPMPN 120
           AAE+LFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFL+SN+QEA+P  +
Sbjct: 61  AAESLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLASNLQEAQP-HD 120

Query: 121 TVTEPIQGPISIGFSQIGLST 142
              +PIQGP +IGFSQIGLST
Sbjct: 121 FAAQPIQGPNTIGFSQIGLST 140

[Close]

BLAST of MS000379 vs. NCBI nr
Match: XP_004140854.1 (LOB domain-containing protein 24 [Cucumis sativus] >KGN57342.1 hypothetical protein Csa_009713 [Cucumis sativus])

HSP 1 Score: 244.6 bits (623), Expect = 5.6e-61
Identity = 120/141 (85.11%), Postives = 125/141 (88.65%), Query Frame = 0


Query: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFATVHTIYGASNVAKFLRQLPMHLRAE 60
           MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRF  VH IYGASNVAKFL QLP HLRAE
Sbjct: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAE 60

Query: 61  AAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLSSNVQEARPMPN 120
           AAETL FEAKCRIEDPVYGCVGIISQLQH+LHVAETQLAKTRAEIA ++SNVQE     +
Sbjct: 61  AAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQD 120

Query: 121 TVTEPIQGPISIGFSQIGLST 142
              EPIQGP S+GFSQIGLST
Sbjct: 121 FAFEPIQGPNSVGFSQIGLST 141

[Close]

BLAST of MS000379 vs. ExPASy Swiss-Prot
Match: P59468 (LOB domain-containing protein 24 OS=Arabidopsis thaliana OX=3702 GN=LBD24 PE=2 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.6e-37
Identity = 70/112 (62.50%), Postives = 88/112 (78.57%), Query Frame = 0


Query: 5   RCAACKYLRRRCPSDCIFSPFFPSNNPQRFATVHTIYGASNVAKFLRQLPMHLRAEAAET 64
           RCAACKYLRRRCP DC+FSP+FP N+PQ+FA VH IYGA NV+K L+QLP   RAEA E+
Sbjct: 5   RCAACKYLRRRCPKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAEAVES 64

Query: 65  LFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLSSNVQEAR 117
           L FEAKCR++DPVYGCVGII  L+ Q+   + +LAKT+AEIA   + + + +
Sbjct: 65  LCFEAKCRVDDPVYGCVGIIHLLKTQIQKTQNELAKTQAEIAVAQTKLSQTQ 116

[Close]

BLAST of MS000379 vs. ExPASy Swiss-Prot
Match: P59467 (LOB domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN=LBD23 PE=1 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 3.5e-37
Identity = 70/110 (63.64%), Postives = 87/110 (79.09%), Query Frame = 0


Query: 5   RCAACKYLRRRCPSDCIFSPFFPSNNPQRFATVHTIYGASNVAKFLRQLPMHLRAEAAET 64
           RCAACKYLRRRCP DC+FSP+FP N+PQ+FA VH IYGA NV+K L+QLP   RAEA E+
Sbjct: 5   RCAACKYLRRRCPKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAEAVES 64

Query: 65  LFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLSSNVQE 115
           L FEAKCR++DPVYGCVGII  L+ Q+   + +LAKT+AEIA   + + +
Sbjct: 65  LCFEAKCRVDDPVYGCVGIIHLLKTQIQKTQNELAKTQAEIAVAQTKLSQ 114

[Close]

BLAST of MS000379 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.8e-31
Identity = 58/103 (56.31%), Postives = 77/103 (74.76%), Query Frame = 0


Query: 6   CAACKYLRRRCPSDCIFSPFFPSNNPQRFATVHTIYGASNVAKFLRQLPMHLRAEAAETL 65
           CAACK LRRRC  DC+FSP+FP++ PQ+FA VH ++GASNV K L++LP+H R +A  ++
Sbjct: 14  CAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVSSM 73

Query: 66  FFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFL 109
            +EA  R+ DPVYGCVG IS LQ Q+ V + QLA  +AE+  L
Sbjct: 74  VYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHL 116

[Close]

BLAST of MS000379 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 132.5 bits (332), Expect = 4.1e-30
Identity = 59/103 (57.28%), Postives = 78/103 (75.73%), Query Frame = 0


Query: 3   SGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFATVHTIYGASNVAKFLRQLPMHLRAEAA 62
           S  CA+CK LRRRC  DCIF+P+FP ++P +FA VH ++GASNV+K L++LP+H RA+A 
Sbjct: 6   SSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 65

Query: 63  ETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEI 106
            +L FEA  R+ DPVYGCVG IS LQ+Q+   + QLA  +AEI
Sbjct: 66  NSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEI 108

[Close]

BLAST of MS000379 vs. ExPASy Swiss-Prot
Match: Q9FKZ3 (LOB domain-containing protein 36 OS=Arabidopsis thaliana OX=3702 GN=LBD36 PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 6.5e-28
Identity = 54/104 (51.92%), Postives = 75/104 (72.12%), Query Frame = 0


Query: 3   SGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFATVHTIYGASNVAKFLRQLPMHLRAEAA 62
           S  CAACK+LRR+C  +C+F+P+FP + PQ+FA VH ++GASNVAK L +L  + R +A 
Sbjct: 5   SSPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDAV 64

Query: 63  ETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIA 107
            +LF+EA+ R+ DPVYGCVG+IS LQH+L      L   + E+A
Sbjct: 65  NSLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKELA 108

[Close]

BLAST of MS000379 vs. ExPASy TrEMBL
Match: A0A6J1JCD0 (LOB domain-containing protein 24-like OS=Cucurbita maxima OX=3661 GN=LOC111483182 PE=3 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.7e-63
Identity = 127/142 (89.44%), Postives = 132/142 (92.96%), Query Frame = 0


Query: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFATVHTIYGASNVAKFLRQLPMHLRAE 60
           MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFA VH IYGASNVAKFL QLP+HLRAE
Sbjct: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFAIVHRIYGASNVAKFLHQLPVHLRAE 60

Query: 61  AAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLSSNV-QEARPMP 120
           AAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFL+SN+ QEA+P  
Sbjct: 61  AAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLASNLHQEAQPQD 120

Query: 121 NTVTEPIQGPISIGFSQIGLST 142
             V EPIQGP +IGFSQIGLST
Sbjct: 121 FAV-EPIQGPNTIGFSQIGLST 141

[Close]

BLAST of MS000379 vs. ExPASy TrEMBL
Match: A0A6J1E5I6 (LOB domain-containing protein 24-like OS=Cucurbita moschata OX=3662 GN=LOC111430896 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.5e-62
Identity = 122/141 (86.52%), Postives = 130/141 (92.20%), Query Frame = 0


Query: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFATVHTIYGASNVAKFLRQLPMHLRAE 60
           MISGRCAACKYLRRRC SDCIFSPFFPSNNPQRFA VH IYGASNVAKFL QLP+HLR E
Sbjct: 1   MISGRCAACKYLRRRCASDCIFSPFFPSNNPQRFAIVHRIYGASNVAKFLHQLPLHLRPE 60

Query: 61  AAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLSSNVQEARPMPN 120
           AAE+LFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFL+SN+QEA+P  +
Sbjct: 61  AAESLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLASNLQEAQP-HD 120

Query: 121 TVTEPIQGPISIGFSQIGLST 142
              +PIQGP +IGFSQIGLST
Sbjct: 121 FAAQPIQGPNTIGFSQIGLST 140

[Close]

BLAST of MS000379 vs. ExPASy TrEMBL
Match: A0A0A0L9N7 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G180300 PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.7e-61
Identity = 120/141 (85.11%), Postives = 125/141 (88.65%), Query Frame = 0


Query: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFATVHTIYGASNVAKFLRQLPMHLRAE 60
           MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRF  VH IYGASNVAKFL QLP HLRAE
Sbjct: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAE 60

Query: 61  AAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLSSNVQEARPMPN 120
           AAETL FEAKCRIEDPVYGCVGIISQLQH+LHVAETQLAKTRAEIA ++SNVQE     +
Sbjct: 61  AAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQD 120

Query: 121 TVTEPIQGPISIGFSQIGLST 142
              EPIQGP S+GFSQIGLST
Sbjct: 121 FAFEPIQGPNSVGFSQIGLST 141

[Close]

BLAST of MS000379 vs. ExPASy TrEMBL
Match: A0A1S3AY36 (LOB domain-containing protein 24-like OS=Cucumis melo OX=3656 GN=LOC103484045 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 1.0e-60
Identity = 119/142 (83.80%), Postives = 127/142 (89.44%), Query Frame = 0


Query: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFATVHTIYGASNVAKFLRQLPMHLRAE 60
           MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRF  VH IYGASNVAKFL QLP HLR E
Sbjct: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRGE 60

Query: 61  AAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLSSNVQEARP-MP 120
           AAETL FEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIA ++SNVQE +P + 
Sbjct: 61  AAETLIFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIACVASNVQEEQPQLQ 120

Query: 121 NTVTEPIQGPISIGFSQIGLST 142
           +   +PIQGP S+GFSQIGLS+
Sbjct: 121 DFAFQPIQGPNSVGFSQIGLSS 142

[Close]

BLAST of MS000379 vs. ExPASy TrEMBL
Match: A0A0A0LLX6 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G373510 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 5.7e-51
Identity = 102/135 (75.56%), Postives = 114/135 (84.44%), Query Frame = 0


Query: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFATVHTIYGASNVAKFLRQLPMHLRAE 60
           MI  RCAACKYLRRRC S+CIFSP+FPSNNPQRFA VH IYGASNVAKFL+Q+PM LR E
Sbjct: 1   MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE 60

Query: 61  AAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLSSNVQEARPMPN 120
           AAETL+FEAKCRIEDP+YGCVGIISQLQ++LHVAETQLAKTRAEIA L+SN Q+A+    
Sbjct: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQAQHEDF 120

Query: 121 TVTEPIQGPISIGFS 136
              +P  GPI  G S
Sbjct: 121 PFDDPSSGPIFTGLS 135

[Close]

BLAST of MS000379 vs. TAIR 10
Match: AT3G26660.1 (LOB domain-containing protein 24 )

HSP 1 Score: 156.4 bits (394), Expect = 1.9e-38
Identity = 70/112 (62.50%), Postives = 88/112 (78.57%), Query Frame = 0


Query: 5   RCAACKYLRRRCPSDCIFSPFFPSNNPQRFATVHTIYGASNVAKFLRQLPMHLRAEAAET 64
           RCAACKYLRRRCP DC+FSP+FP N+PQ+FA VH IYGA NV+K L+QLP   RAEA E+
Sbjct: 5   RCAACKYLRRRCPKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAEAVES 64

Query: 65  LFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLSSNVQEAR 117
           L FEAKCR++DPVYGCVGII  L+ Q+   + +LAKT+AEIA   + + + +
Sbjct: 65  LCFEAKCRVDDPVYGCVGIIHLLKTQIQKTQNELAKTQAEIAVAQTKLSQTQ 116

[Close]

BLAST of MS000379 vs. TAIR 10
Match: AT3G26620.1 (LOB domain-containing protein 23 )

HSP 1 Score: 156.0 bits (393), Expect = 2.5e-38
Identity = 70/110 (63.64%), Postives = 87/110 (79.09%), Query Frame = 0


Query: 5   RCAACKYLRRRCPSDCIFSPFFPSNNPQRFATVHTIYGASNVAKFLRQLPMHLRAEAAET 64
           RCAACKYLRRRCP DC+FSP+FP N+PQ+FA VH IYGA NV+K L+QLP   RAEA E+
Sbjct: 5   RCAACKYLRRRCPKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAEAVES 64

Query: 65  LFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLSSNVQE 115
           L FEAKCR++DPVYGCVGII  L+ Q+   + +LAKT+AEIA   + + +
Sbjct: 65  LCFEAKCRVDDPVYGCVGIIHLLKTQIQKTQNELAKTQAEIAVAQTKLSQ 114

[Close]

BLAST of MS000379 vs. TAIR 10
Match: AT1G31320.1 (LOB domain-containing protein 4 )

HSP 1 Score: 135.6 bits (340), Expect = 3.4e-32
Identity = 58/103 (56.31%), Postives = 77/103 (74.76%), Query Frame = 0


Query: 6   CAACKYLRRRCPSDCIFSPFFPSNNPQRFATVHTIYGASNVAKFLRQLPMHLRAEAAETL 65
           CAACK LRRRC  DC+FSP+FP++ PQ+FA VH ++GASNV K L++LP+H R +A  ++
Sbjct: 14  CAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVSSM 73

Query: 66  FFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFL 109
            +EA  R+ DPVYGCVG IS LQ Q+ V + QLA  +AE+  L
Sbjct: 74  VYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHL 116

[Close]

BLAST of MS000379 vs. TAIR 10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 132.5 bits (332), Expect = 2.9e-31
Identity = 59/103 (57.28%), Postives = 78/103 (75.73%), Query Frame = 0


Query: 3   SGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFATVHTIYGASNVAKFLRQLPMHLRAEAA 62
           S  CA+CK LRRRC  DCIF+P+FP ++P +FA VH ++GASNV+K L++LP+H RA+A 
Sbjct: 6   SSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 65

Query: 63  ETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEI 106
            +L FEA  R+ DPVYGCVG IS LQ+Q+   + QLA  +AEI
Sbjct: 66  NSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEI 108

[Close]

BLAST of MS000379 vs. TAIR 10
Match: AT5G66870.1 (ASYMMETRIC LEAVES 2-like 1 )

HSP 1 Score: 125.2 bits (313), Expect = 4.6e-29
Identity = 54/104 (51.92%), Postives = 75/104 (72.12%), Query Frame = 0


Query: 3   SGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFATVHTIYGASNVAKFLRQLPMHLRAEAA 62
           S  CAACK+LRR+C  +C+F+P+FP + PQ+FA VH ++GASNVAK L +L  + R +A 
Sbjct: 5   SSPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDAV 64

Query: 63  ETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIA 107
            +LF+EA+ R+ DPVYGCVG+IS LQH+L      L   + E+A
Sbjct: 65  NSLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKELA 108

The following BLAST results are available for this feature:

BLAST of MS000379 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023522202.1	9.3e-64	88.65	LOB domain-containing protein 24-like [Cucurbita pepo subsp. pepo]	[more]
XP_022985104.1	3.5e-63	89.44	LOB domain-containing protein 24-like [Cucurbita maxima]	[more]
KAG7014789.1	3.0e-62	86.52	LOB domain-containing protein 24, partial [Cucurbita argyrosperma subsp. argyros...	[more]
XP_022923144.1	5.1e-62	86.52	LOB domain-containing protein 24-like [Cucurbita moschata]	[more]
XP_004140854.1	5.6e-61	85.11	LOB domain-containing protein 24 [Cucumis sativus] >KGN57342.1 hypothetical prot...	[more]

BLAST of MS000379 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P59468	2.6e-37	62.50	LOB domain-containing protein 24 OS=Arabidopsis thaliana OX=3702 GN=LBD24 PE=2 S...	[more]
P59467	3.5e-37	63.64	LOB domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN=LBD23 PE=1 S...	[more]
Q9SHE9	4.8e-31	56.31	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
Q8LBW3	4.1e-30	57.28	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
Q9FKZ3	6.5e-28	51.92	LOB domain-containing protein 36 OS=Arabidopsis thaliana OX=3702 GN=LBD36 PE=2 S...	[more]

BLAST of MS000379 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JCD0	1.7e-63	89.44	LOB domain-containing protein 24-like OS=Cucurbita maxima OX=3661 GN=LOC11148318...	[more]
A0A6J1E5I6	2.5e-62	86.52	LOB domain-containing protein 24-like OS=Cucurbita moschata OX=3662 GN=LOC111430...	[more]
A0A0A0L9N7	2.7e-61	85.11	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G180300 PE=3 SV...	[more]
A0A1S3AY36	1.0e-60	83.80	LOB domain-containing protein 24-like OS=Cucumis melo OX=3656 GN=LOC103484045 PE...	[more]
A0A0A0LLX6	5.7e-51	75.56	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G373510 PE=3 SV...	[more]

BLAST of MS000379 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G26660.1	1.9e-38	62.50	LOB domain-containing protein 24	[more]
AT3G26620.1	2.5e-38	63.64	LOB domain-containing protein 23	[more]
AT1G31320.1	3.4e-32	56.31	LOB domain-containing protein 4	[more]
AT2G30130.1	2.9e-31	57.28	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G66870.1	4.6e-29	51.92	ASYMMETRIC LEAVES 2-like 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 84..111
None	No IPR available	PANTHER	PTHR31301:SF120	LOB DOMAIN-CONTAINING PROTEIN 23-RELATED	coord: 1..118
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 1..118
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 5..102 e-value: 8.4E-38 score: 128.9
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 4..105 score: 23.754019

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000379.1	MS000379.1	mRNA