MS000376 (gene) Bitter gourd (TR) v1

Overview
NameMS000376
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold44: 1276423 .. 1276524 (+)
RNA-Seq ExpressionMS000376
SyntenyMS000376
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCCGAGCCGCCATCTCCGCCGTTGGAAATGTCCCAAGCCAAATCCTAGACTTCTTATTGGGCTCCCTTACCTCGCAAACCCACTTACCGGAATTCCTCCTC

mRNA sequence

GCCCGAGCCGCCATCTCCGCCGTTGGAAATGTCCCAAGCCAAATCCTAGACTTCTTATTGGGCTCCCTTACCTCGCAAACCCACTTACCGGAATTCCTCCTC

Coding sequence (CDS)

GCCCGAGCCGCCATCTCCGCCGTTGGAAATGTCCCAAGCCAAATCCTAGACTTCTTATTGGGCTCCCTTACCTCGCAAACCCACTTACCGGAATTCCTCCTC

Protein sequence

ARAAISAVGNVPSQILDFLLGSLTSQTHLPEFLL
Homology
BLAST of MS000376 vs. NCBI nr
Match: RYR37568.1 (hypothetical protein Ahy_A09g042448 [Arachis hypogaea])

HSP 1 Score: 56.6 bits (135), Expect = 4.8e-05
Identity = 29/33 (87.88%), Postives = 29/33 (87.88%), Query Frame = 0

Query: 1   ARAAISAVGNVPSQILDFLLGSLTSQTHLPEFL 34
           ARAAISAV NVPS IL FL GSLTSQTHLPEFL
Sbjct: 95  ARAAISAVANVPSHILVFLFGSLTSQTHLPEFL 127

BLAST of MS000376 vs. NCBI nr
Match: RYQ93996.1 (hypothetical protein Ahy_B09g100207 [Arachis hypogaea])

HSP 1 Score: 56.6 bits (135), Expect = 4.8e-05
Identity = 29/33 (87.88%), Postives = 29/33 (87.88%), Query Frame = 0

Query: 1   ARAAISAVGNVPSQILDFLLGSLTSQTHLPEFL 34
           ARAAISAV NVPS IL FL GSLTSQTHLPEFL
Sbjct: 94  ARAAISAVANVPSHILVFLFGSLTSQTHLPEFL 126

BLAST of MS000376 vs. NCBI nr
Match: KAG6503706.1 (hypothetical protein ZIOFF_036030 [Zingiber officinale])

HSP 1 Score: 54.7 bits (130), Expect = 1.8e-04
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 0

Query: 1  ARAAISAVGNVPSQILDFLLGSLTSQTHLPEFLL 35
          ARAAISAVGNVPSQI DFL GS  S+THLP+FL+
Sbjct: 7  ARAAISAVGNVPSQIRDFLRGSRISETHLPQFLI 40

BLAST of MS000376 vs. NCBI nr
Match: KYP74918.1 (hypothetical protein KK1_007614 [Cajanus cajan])

HSP 1 Score: 53.9 bits (128), Expect = 3.1e-04
Identity = 29/34 (85.29%), Postives = 29/34 (85.29%), Query Frame = 0

Query: 1  ARAAISAVGNVPSQILDFLLGSLTSQTHLPEFLL 35
          ARAAISAVG VPSQIL FLLGS TS THLPE LL
Sbjct: 36 ARAAISAVGKVPSQILVFLLGSRTSHTHLPESLL 69

BLAST of MS000376 vs. NCBI nr
Match: RDY10752.1 (hypothetical protein CR513_04685, partial [Mucuna pruriens])

HSP 1 Score: 53.5 bits (127), Expect = 4.1e-04
Identity = 28/33 (84.85%), Postives = 28/33 (84.85%), Query Frame = 0

Query: 1  ARAAISAVGNVPSQILDFLLGSLTSQTHLPEFL 34
          ARAAIS VG VPSQIL FLLGSLTS THL EFL
Sbjct: 53 ARAAISGVGKVPSQILVFLLGSLTSHTHLSEFL 85

BLAST of MS000376 vs. ExPASy TrEMBL
Match: A0A445BFV3 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A09g042448 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.3e-05
Identity = 29/33 (87.88%), Postives = 29/33 (87.88%), Query Frame = 0

Query: 1   ARAAISAVGNVPSQILDFLLGSLTSQTHLPEFL 34
           ARAAISAV NVPS IL FL GSLTSQTHLPEFL
Sbjct: 95  ARAAISAVANVPSHILVFLFGSLTSQTHLPEFL 127

BLAST of MS000376 vs. ExPASy TrEMBL
Match: A0A444XX65 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B09g100207 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.3e-05
Identity = 29/33 (87.88%), Postives = 29/33 (87.88%), Query Frame = 0

Query: 1   ARAAISAVGNVPSQILDFLLGSLTSQTHLPEFL 34
           ARAAISAV NVPS IL FL GSLTSQTHLPEFL
Sbjct: 94  ARAAISAVANVPSHILVFLFGSLTSQTHLPEFL 126

BLAST of MS000376 vs. ExPASy TrEMBL
Match: A0A151U6M4 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_007614 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.5e-04
Identity = 29/34 (85.29%), Postives = 29/34 (85.29%), Query Frame = 0

Query: 1  ARAAISAVGNVPSQILDFLLGSLTSQTHLPEFLL 35
          ARAAISAVG VPSQIL FLLGS TS THLPE LL
Sbjct: 36 ARAAISAVGKVPSQILVFLLGSRTSHTHLPESLL 69

BLAST of MS000376 vs. ExPASy TrEMBL
Match: A0A371I6U0 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_04685 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.0e-04
Identity = 28/33 (84.85%), Postives = 28/33 (84.85%), Query Frame = 0

Query: 1  ARAAISAVGNVPSQILDFLLGSLTSQTHLPEFL 34
          ARAAIS VG VPSQIL FLLGSLTS THL EFL
Sbjct: 53 ARAAISGVGKVPSQILVFLLGSLTSHTHLSEFL 85

BLAST of MS000376 vs. ExPASy TrEMBL
Match: A0A5K0YK11 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS9195 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 4.4e-04
Identity = 26/34 (76.47%), Postives = 28/34 (82.35%), Query Frame = 0

Query: 1   ARAAISAVGNVPSQILDFLLGSLTSQTHLPEFLL 35
           ARAAIS VGNVPSQILDFL GS  S THLP+ L+
Sbjct: 83  ARAAISGVGNVPSQILDFLRGSRISDTHLPQLLI 116

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RYR37568.14.8e-0587.88hypothetical protein Ahy_A09g042448 [Arachis hypogaea][more]
RYQ93996.14.8e-0587.88hypothetical protein Ahy_B09g100207 [Arachis hypogaea][more]
KAG6503706.11.8e-0479.41hypothetical protein ZIOFF_036030 [Zingiber officinale][more]
KYP74918.13.1e-0485.29hypothetical protein KK1_007614 [Cajanus cajan][more]
RDY10752.14.1e-0484.85hypothetical protein CR513_04685, partial [Mucuna pruriens][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A445BFV32.3e-0587.88Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A09g042448 PE=4 SV=1[more]
A0A444XX652.3e-0587.88Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B09g100207 PE=4 SV=1[more]
A0A151U6M41.5e-0485.29Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_007614 PE=4 SV=1[more]
A0A371I6U02.0e-0484.85Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_04685 P... [more]
A0A5K0YK114.4e-0476.47Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS91... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS000376.1MS000376.1mRNA