MS000350 (gene) Bitter gourd (TR) v1

Overview


Name	MS000350
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	embryo-specific protein ATS3B-like
Location	scaffold44: 1074531 .. 1075816 (+)
RNA-Seq Expression	MS000350
Synteny	MS000350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGAAATGAAGAGACTACTCTGTTTTCTGCTCAGCTCCGTCTTCCTTTTCGCTCTTTCAGAGGCCACCCAATTGCTGCCTCAACCCGCTGAATCCTTCAATTTCAATTTAACATATATTCAGGTCTATATTTATCGGTTATTCCTTTTACATTTTGCACTCATTTTGATTCTTTTTGGCCTATATCTGACAACGATTTTATGTTTTGCTTTTGCGCCTTTGCTGTGGAATTTTCGGTGTAAAGCAAGCCGGGAGTTGCTCTTACTCGGTTGTTATATCGACGAGCTGTTCGTCACCTTCTTACACTAGGGATCACATCAGTCTTTCTTTCGGCGATGCTTATGGCAACCAGGTTTGCTTTCTTTAAATTTTAATTTTCCCATTGATTTTCTCGGAATAGAACGCCCTAATTTTCAGACATTCGAAATGGTTAATGAAAGAAATCATAGATGAAATTTGCATCGGAGTTTCGTAATATCCGTTTTTCTTGCAATGTAAAAGCATATTAGTTGTTCTAGGTTAAAGTAACTGATTGGTATTATCCTTTATCTTTCTGGTACCAAATGGAATGGAAATCAAATCAGGGGTTTATTTCTCGATTATGATGGGATGGTAGCTTGTTGATTTATATGTTTCAGAACTTAAAAAATCAGGTTTGTATTTAGTGTTATATTAATATCTTTGAAAAATCCAGTCATTAGACCAAGTTGAGTAACATCATATAGCCCTGAGACGTCCAAAACTTCCTAAAACATTTGGAAAGTTTCAAAACATCATTTGTTCTAATGTTATAACATACTGTTCTTTCTAGGAATTTGAAAGAACACCGTGTTTATAATTCAGAAACCATGTAAACTCTCTTTTTTCTCACATAAATTTGGGAATTTCATATGTAACAATTAAACATTGAAGAAGCCTGCTTTGTATGATGAGTCGTGATTCGTGAAATTCGACTTGTGTGCCAGATTTATGTGCCAAGGATTGATGATCCATCCAGAAGGACATTTGAAAGATGTTCAACCGATACATTTCACATAAATGGACCTTGTGCTTACCAAATATGCTACGTCTATCTTTATCGCTCTGGACCAGATGCCTGGATCCCAACAACAGTGAAAATCTCTGGTGATAATTCTAGACCCATCACATTTAACTACAACACTGCCATACCAAATGACGTATGGTTTGGGTTTAACTTGTGTGGACATGCTTCGTCTTCAAACCGTTTATCAAGTTGTATGTGGTTCATATACGTCATTGGAGTGTGGATTCTCGCTCTTCTCTTG

mRNA sequence

GAAGAAATGAAGAGACTACTCTGTTTTCTGCTCAGCTCCGTCTTCCTTTTCGCTCTTTCAGAGGCCACCCAATTGCTGCCTCAACCCGCTGAATCCTTCAATTTCAATTTAACATATATTCAGCAAGCCGGGAGTTGCTCTTACTCGGTTGTTATATCGACGAGCTGTTCGTCACCTTCTTACACTAGGGATCACATCAGTCTTTCTTTCGGCGATGCTTATGGCAACCAGATTTATGTGCCAAGGATTGATGATCCATCCAGAAGGACATTTGAAAGATGTTCAACCGATACATTTCACATAAATGGACCTTGTGCTTACCAAATATGCTACGTCTATCTTTATCGCTCTGGACCAGATGCCTGGATCCCAACAACAGTGAAAATCTCTGGTGATAATTCTAGACCCATCACATTTAACTACAACACTGCCATACCAAATGACGTATGGTTTGGGTTTAACTTGTGTGGACATGCTTCGTCTTCAAACCGTTTATCAAGTTGTATGTGGTTCATATACGTCATTGGAGTGTGGATTCTCGCTCTTCTCTTG

Coding sequence (CDS)

GAAGAAATGAAGAGACTACTCTGTTTTCTGCTCAGCTCCGTCTTCCTTTTCGCTCTTTCAGAGGCCACCCAATTGCTGCCTCAACCCGCTGAATCCTTCAATTTCAATTTAACATATATTCAGCAAGCCGGGAGTTGCTCTTACTCGGTTGTTATATCGACGAGCTGTTCGTCACCTTCTTACACTAGGGATCACATCAGTCTTTCTTTCGGCGATGCTTATGGCAACCAGATTTATGTGCCAAGGATTGATGATCCATCCAGAAGGACATTTGAAAGATGTTCAACCGATACATTTCACATAAATGGACCTTGTGCTTACCAAATATGCTACGTCTATCTTTATCGCTCTGGACCAGATGCCTGGATCCCAACAACAGTGAAAATCTCTGGTGATAATTCTAGACCCATCACATTTAACTACAACACTGCCATACCAAATGACGTATGGTTTGGGTTTAACTTGTGTGGACATGCTTCGTCTTCAAACCGTTTATCAAGTTGTATGTGGTTCATATACGTCATTGGAGTGTGGATTCTCGCTCTTCTCTTG

Protein sequence

EEMKRLLCFLLSSVFLFALSEATQLLPQPAESFNFNLTYIQQAGSCSYSVVISTSCSSPSYTRDHISLSFGDAYGNQIYVPRIDDPSRRTFERCSTDTFHINGPCAYQICYVYLYRSGPDAWIPTTVKISGDNSRPITFNYNTAIPNDVWFGFNLCGHASSSNRLSSCMWFIYVIGVWILALLL

Homology

[Close]

BLAST of MS000350 vs. NCBI nr
Match: XP_022140983.1 (embryo-specific protein ATS3B-like isoform X2 [Momordica charantia])

HSP 1 Score: 378.6 bits (971), Expect = 3.0e-101
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 3   MKRLLCFLLSSVFLFALSEATQLLPQPAESFNFNLTYIQQAGSCSYSVVISTSCSSPSYT 62
           MKRLLCFLLSSVFLFALSEATQLLPQPAESFNFNLTYIQQAGSCSYSVVISTSCSSPSYT
Sbjct: 1   MKRLLCFLLSSVFLFALSEATQLLPQPAESFNFNLTYIQQAGSCSYSVVISTSCSSPSYT 60

Query: 63  RDHISLSFGDAYGNQIYVPRIDDPSRRTFERCSTDTFHINGPCAYQICYVYLYRSGPDAW 122
           RDHISLSFGDAYGNQIYVPRIDDPSRRTFERCSTDTFHINGPCAYQICYVYLYRSGPDAW
Sbjct: 61  RDHISLSFGDAYGNQIYVPRIDDPSRRTFERCSTDTFHINGPCAYQICYVYLYRSGPDAW 120

Query: 123 IPTTVKISGDNSRPITFNYNTAIPNDVWFGFNLCGHASSSNRLSSCMWFIYVIGVWILAL 182
           IPTTVKISGDNSRPITFNYNTAIPNDVWFGFNLCGHASSSNRLSSCMWFIYVIGVWILAL
Sbjct: 121 IPTTVKISGDNSRPITFNYNTAIPNDVWFGFNLCGHASSSNRLSSCMWFIYVIGVWILAL 180

Query: 183 LL 185
           LL
Sbjct: 181 LL 182

[Close]

BLAST of MS000350 vs. NCBI nr
Match: XP_022140984.1 (embryo-specific protein ATS3B-like isoform X3 [Momordica charantia])

HSP 1 Score: 378.6 bits (971), Expect = 3.0e-101
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 3   MKRLLCFLLSSVFLFALSEATQLLPQPAESFNFNLTYIQQAGSCSYSVVISTSCSSPSYT 62
           MKRLLCFLLSSVFLFALSEATQLLPQPAESFNFNLTYIQQAGSCSYSVVISTSCSSPSYT
Sbjct: 1   MKRLLCFLLSSVFLFALSEATQLLPQPAESFNFNLTYIQQAGSCSYSVVISTSCSSPSYT 60

Query: 63  RDHISLSFGDAYGNQIYVPRIDDPSRRTFERCSTDTFHINGPCAYQICYVYLYRSGPDAW 122
           RDHISLSFGDAYGNQIYVPRIDDPSRRTFERCSTDTFHINGPCAYQICYVYLYRSGPDAW
Sbjct: 61  RDHISLSFGDAYGNQIYVPRIDDPSRRTFERCSTDTFHINGPCAYQICYVYLYRSGPDAW 120

Query: 123 IPTTVKISGDNSRPITFNYNTAIPNDVWFGFNLCGHASSSNRLSSCMWFIYVIGVWILAL 182
           IPTTVKISGDNSRPITFNYNTAIPNDVWFGFNLCGHASSSNRLSSCMWFIYVIGVWILAL
Sbjct: 121 IPTTVKISGDNSRPITFNYNTAIPNDVWFGFNLCGHASSSNRLSSCMWFIYVIGVWILAL 180

Query: 183 LL 185
           LL
Sbjct: 181 LL 182

[Close]

BLAST of MS000350 vs. NCBI nr
Match: XP_022140982.1 (embryo-specific protein ATS3B-like isoform X1 [Momordica charantia])

HSP 1 Score: 377.5 bits (968), Expect = 6.7e-101
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 3   MKRLLCFLLSSVFLFALSEATQLLPQPAESFNFNLTYIQQAGSCSYSVVISTSCSSPSYT 62
           MKRLLCFLLSSVFLFALSEATQLLPQPAESFNFNLTYIQQAGSCSYSVVISTSCSSPSYT
Sbjct: 1   MKRLLCFLLSSVFLFALSEATQLLPQPAESFNFNLTYIQQAGSCSYSVVISTSCSSPSYT 60

Query: 63  RDHISLSFGDAYGNQIYVPRIDDPSRRTFERCSTDTFHINGPCAYQICYVYLYRSGPDAW 122
           RDHISLSFGDAYGNQIYVPRIDDPSRRTFERCSTDTFHINGPCAYQICYVYLYRSGPDAW
Sbjct: 61  RDHISLSFGDAYGNQIYVPRIDDPSRRTFERCSTDTFHINGPCAYQICYVYLYRSGPDAW 120

Query: 123 IPTTVKISGDNSRPITFNYNTAIPNDVWFGFNLCGHASSSNRLSSCMWFIYVIGVWILAL 182
           IPTTVKISGDNSRPITFNYNTAIPNDVWFGFNLCGHASSSNRLSSCMWFIYVIGVWILAL
Sbjct: 121 IPTTVKISGDNSRPITFNYNTAIPNDVWFGFNLCGHASSSNRLSSCMWFIYVIGVWILAL 180

Query: 183 L 184
           L
Sbjct: 181 L 181

[Close]

BLAST of MS000350 vs. NCBI nr
Match: XP_022984446.1 (embryo-specific protein ATS3B-like [Cucurbita maxima])

HSP 1 Score: 316.6 bits (810), Expect = 1.4e-82
Identity = 152/182 (83.52%), Postives = 166/182 (91.21%), Query Frame = 0


Query: 3   MKRLLCFLLSSVFLFALSEATQLLPQPAESFNFNLTYIQQAGSCSYSVVISTSCSSPSYT 62
           MKR+LCFLL+S FL AL EAT+LLP+ AES  FNLTYIQQ GSCSYSVVISTSCSSP+YT
Sbjct: 1   MKRVLCFLLTSAFLLALLEATELLPESAES--FNLTYIQQLGSCSYSVVISTSCSSPTYT 60

Query: 63  RDHISLSFGDAYGNQIYVPRIDDPSRRTFERCSTDTFHINGPCAYQICYVYLYRSGPDAW 122
           RD IS+SFGDAYGNQIYVPRIDDPSRR FERCS+DTF ++GPCAYQ+CYVYLYRSGPDAW
Sbjct: 61  RDQISVSFGDAYGNQIYVPRIDDPSRRIFERCSSDTFSVSGPCAYQLCYVYLYRSGPDAW 120

Query: 123 IPTTVKISGDNSRPITFNYNTAIPNDVWFGFNLCGHASSSNRLSSCMWFIYVIGVWILAL 182
           IPTTVKISG NSRP+TFNYNTAIPNDVWFGFNLCGHASSSNR+SSC+WF+YV  V IL L
Sbjct: 121 IPTTVKISGPNSRPVTFNYNTAIPNDVWFGFNLCGHASSSNRISSCIWFLYVSFVSILLL 180

Query: 183 LL 185
            L
Sbjct: 181 FL 180

[Close]

BLAST of MS000350 vs. NCBI nr
Match: XP_022923164.1 (embryo-specific protein ATS3B-like [Cucurbita moschata])

HSP 1 Score: 313.9 bits (803), Expect = 9.0e-82
Identity = 151/182 (82.97%), Postives = 165/182 (90.66%), Query Frame = 0


Query: 3   MKRLLCFLLSSVFLFALSEATQLLPQPAESFNFNLTYIQQAGSCSYSVVISTSCSSPSYT 62
           MKR+LCFLL+S  L AL EAT+LLP+ AES  FNLTYIQQ GSCSYSVVISTSCSSP+YT
Sbjct: 1   MKRVLCFLLTSALLLALLEATELLPESAES--FNLTYIQQLGSCSYSVVISTSCSSPTYT 60

Query: 63  RDHISLSFGDAYGNQIYVPRIDDPSRRTFERCSTDTFHINGPCAYQICYVYLYRSGPDAW 122
           RD IS+SFGDAYGNQIYVPRIDDPSRR FERCS+DTF ++GPCAYQICYVYLYR+GPDAW
Sbjct: 61  RDQISVSFGDAYGNQIYVPRIDDPSRRIFERCSSDTFSVSGPCAYQICYVYLYRTGPDAW 120

Query: 123 IPTTVKISGDNSRPITFNYNTAIPNDVWFGFNLCGHASSSNRLSSCMWFIYVIGVWILAL 182
           IPTTVKISG NSRP+TFNYNTAIPNDVWFGFNLCGHASSSNR+SSC+WF+YV  V IL L
Sbjct: 121 IPTTVKISGPNSRPVTFNYNTAIPNDVWFGFNLCGHASSSNRISSCIWFLYVSFVSILLL 180

Query: 183 LL 185
            L
Sbjct: 181 FL 180

[Close]

BLAST of MS000350 vs. ExPASy Swiss-Prot
Match: Q6NPM5 (Embryo-specific protein ATS3B OS=Arabidopsis thaliana OX=3702 GN=ATS3B PE=1 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.7e-52
Identity = 97/164 (59.15%), Postives = 123/164 (75.00%), Query Frame = 0


Query: 5   RLLCFLLSSVFLFALS-EATQLLPQPAESFNFNLTYIQQAG-SCSYSVVISTSCSSPSYT 64
           RL   L+S VF+ + S   +++L  P  + +FN++ IQ+ G +C+Y+V+ISTSCSS  YT
Sbjct: 5   RLFFTLISFVFIISTSVYESKVLDPPHVAESFNVSLIQKLGNTCAYTVIISTSCSSTRYT 64

Query: 65  RDHISLSFGDAYGNQIYVPRIDDPSRRTFERCSTDTFHINGPCAYQICYVYLYRSGPDAW 124
           RD IS++FGD YGNQIY PR+DDPS +TFE+CS+DTF INGPC YQICYVYLYRSGPD W
Sbjct: 65  RDQISVAFGDGYGNQIYAPRLDDPSTKTFEQCSSDTFQINGPCTYQICYVYLYRSGPDGW 124

Query: 125 IPTTVKISGDNSRPITFNYNTAIPNDVWFGFNLCGHASSSNRLS 167
           IP TVKI    S+ +TF YNT +P  VW+GFN C  AS SN L+
Sbjct: 125 IPNTVKIYSHGSKAVTFPYNTYVPESVWYGFNYCNSASDSNVLA 168

[Close]

BLAST of MS000350 vs. ExPASy Swiss-Prot
Match: Q681K2 (Embryo-specific protein ATS3A OS=Arabidopsis thaliana OX=3702 GN=ATS3A PE=1 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.5e-42
Identity = 84/166 (50.60%), Postives = 111/166 (66.87%), Query Frame = 0


Query: 6   LLCFLLSSVFLFALSEA-TQLLPQPAESFNFNLTYIQQAGSCSYSVVISTSCSSPSYTRD 65
           L  F L S  LF+ + +     P P +SF      ++ A +CSY+V+I TSCSS SYTRD
Sbjct: 8   LFLFALCSFTLFSSARSFITTKPLPIDSF-IPKPKLENAAACSYTVIIKTSCSSVSYTRD 67

Query: 66  HISLSFGDAYGNQIYVPRIDDPSRRTFERCSTDTFHINGPCAYQICYVYLYRSGPDAWIP 125
            IS+SFGD YGN++YV R+DDPS RTFE+CS+DT+ I+GPC   +CY+YL R G D W P
Sbjct: 68  KISISFGDVYGNEVYVKRLDDPSSRTFEKCSSDTYKISGPCMRDVCYLYLLRQGSDGWKP 127

Query: 126 TTVKISGDNSRPITFNYNTAIPNDVWFGFNLC---GHASSSNRLSS 168
             VKI G + R +TF YN  +PN VW+GFN+C   G+  SS  +S+
Sbjct: 128 ENVKIYGSSIRSVTFYYNLFLPNSVWYGFNVCNGIGNTKSSQPIST 172

[Close]

BLAST of MS000350 vs. ExPASy Swiss-Prot
Match: Q9LYP6 (Embryo-specific protein ATS3 OS=Arabidopsis thaliana OX=3702 GN=ATS3 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.8e-24
Identity = 53/127 (41.73%), Postives = 83/127 (65.35%), Query Frame = 0


Query: 35  FNLTYIQ-QAGSCSYSVVISTSCSSPSYTRDHISLSFGDAYGNQIYVPRIDDPSRRT--F 94
           F+L+ IQ Q G+C Y+VV+ TSC SP  TRD IS+ FGDA GN++Y P++    R     
Sbjct: 22  FDLSIIQMQQGTCPYTVVVMTSCLSPESTRDQISIVFGDADGNKVYAPKLGGLVRGPGGL 81

Query: 95  ERCSTDTFHINGPCAYQ-ICYVYLYRSGPDAWIPTTVKISGDNSRPITFNYNTAIPN-DV 154
            +CST+TF + G C    IC +Y+ R+GPD W+P +++I  + S+ + F+++ ++P  + 
Sbjct: 82  GKCSTNTFQVRGQCLNDPICSLYINRNGPDGWVPESIEIYSEGSKSVKFDFSKSVPQLNT 141

Query: 155 WFGFNLC 157
           W+G N C
Sbjct: 142 WYGHNNC 148

[Close]

BLAST of MS000350 vs. ExPASy TrEMBL
Match: A0A6J1CHB0 (embryo-specific protein ATS3B-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111011502 PE=4 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 1.4e-101
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 3   MKRLLCFLLSSVFLFALSEATQLLPQPAESFNFNLTYIQQAGSCSYSVVISTSCSSPSYT 62
           MKRLLCFLLSSVFLFALSEATQLLPQPAESFNFNLTYIQQAGSCSYSVVISTSCSSPSYT
Sbjct: 1   MKRLLCFLLSSVFLFALSEATQLLPQPAESFNFNLTYIQQAGSCSYSVVISTSCSSPSYT 60

Query: 63  RDHISLSFGDAYGNQIYVPRIDDPSRRTFERCSTDTFHINGPCAYQICYVYLYRSGPDAW 122
           RDHISLSFGDAYGNQIYVPRIDDPSRRTFERCSTDTFHINGPCAYQICYVYLYRSGPDAW
Sbjct: 61  RDHISLSFGDAYGNQIYVPRIDDPSRRTFERCSTDTFHINGPCAYQICYVYLYRSGPDAW 120

Query: 123 IPTTVKISGDNSRPITFNYNTAIPNDVWFGFNLCGHASSSNRLSSCMWFIYVIGVWILAL 182
           IPTTVKISGDNSRPITFNYNTAIPNDVWFGFNLCGHASSSNRLSSCMWFIYVIGVWILAL
Sbjct: 121 IPTTVKISGDNSRPITFNYNTAIPNDVWFGFNLCGHASSSNRLSSCMWFIYVIGVWILAL 180

Query: 183 LL 185
           LL
Sbjct: 181 LL 182

[Close]

BLAST of MS000350 vs. ExPASy TrEMBL
Match: A0A6J1CJ97 (embryo-specific protein ATS3B-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011502 PE=4 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 1.4e-101
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 3   MKRLLCFLLSSVFLFALSEATQLLPQPAESFNFNLTYIQQAGSCSYSVVISTSCSSPSYT 62
           MKRLLCFLLSSVFLFALSEATQLLPQPAESFNFNLTYIQQAGSCSYSVVISTSCSSPSYT
Sbjct: 1   MKRLLCFLLSSVFLFALSEATQLLPQPAESFNFNLTYIQQAGSCSYSVVISTSCSSPSYT 60

Query: 63  RDHISLSFGDAYGNQIYVPRIDDPSRRTFERCSTDTFHINGPCAYQICYVYLYRSGPDAW 122
           RDHISLSFGDAYGNQIYVPRIDDPSRRTFERCSTDTFHINGPCAYQICYVYLYRSGPDAW
Sbjct: 61  RDHISLSFGDAYGNQIYVPRIDDPSRRTFERCSTDTFHINGPCAYQICYVYLYRSGPDAW 120

Query: 123 IPTTVKISGDNSRPITFNYNTAIPNDVWFGFNLCGHASSSNRLSSCMWFIYVIGVWILAL 182
           IPTTVKISGDNSRPITFNYNTAIPNDVWFGFNLCGHASSSNRLSSCMWFIYVIGVWILAL
Sbjct: 121 IPTTVKISGDNSRPITFNYNTAIPNDVWFGFNLCGHASSSNRLSSCMWFIYVIGVWILAL 180

Query: 183 LL 185
           LL
Sbjct: 181 LL 182

[Close]

BLAST of MS000350 vs. ExPASy TrEMBL
Match: A0A6J1CIK5 (embryo-specific protein ATS3B-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011502 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 3.2e-101
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 3   MKRLLCFLLSSVFLFALSEATQLLPQPAESFNFNLTYIQQAGSCSYSVVISTSCSSPSYT 62
           MKRLLCFLLSSVFLFALSEATQLLPQPAESFNFNLTYIQQAGSCSYSVVISTSCSSPSYT
Sbjct: 1   MKRLLCFLLSSVFLFALSEATQLLPQPAESFNFNLTYIQQAGSCSYSVVISTSCSSPSYT 60

Query: 63  RDHISLSFGDAYGNQIYVPRIDDPSRRTFERCSTDTFHINGPCAYQICYVYLYRSGPDAW 122
           RDHISLSFGDAYGNQIYVPRIDDPSRRTFERCSTDTFHINGPCAYQICYVYLYRSGPDAW
Sbjct: 61  RDHISLSFGDAYGNQIYVPRIDDPSRRTFERCSTDTFHINGPCAYQICYVYLYRSGPDAW 120

Query: 123 IPTTVKISGDNSRPITFNYNTAIPNDVWFGFNLCGHASSSNRLSSCMWFIYVIGVWILAL 182
           IPTTVKISGDNSRPITFNYNTAIPNDVWFGFNLCGHASSSNRLSSCMWFIYVIGVWILAL
Sbjct: 121 IPTTVKISGDNSRPITFNYNTAIPNDVWFGFNLCGHASSSNRLSSCMWFIYVIGVWILAL 180

Query: 183 L 184
           L
Sbjct: 181 L 181

[Close]

BLAST of MS000350 vs. ExPASy TrEMBL
Match: A0A6J1J591 (embryo-specific protein ATS3B-like OS=Cucurbita maxima OX=3661 GN=LOC111482748 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 6.8e-83
Identity = 152/182 (83.52%), Postives = 166/182 (91.21%), Query Frame = 0


Query: 3   MKRLLCFLLSSVFLFALSEATQLLPQPAESFNFNLTYIQQAGSCSYSVVISTSCSSPSYT 62
           MKR+LCFLL+S FL AL EAT+LLP+ AES  FNLTYIQQ GSCSYSVVISTSCSSP+YT
Sbjct: 1   MKRVLCFLLTSAFLLALLEATELLPESAES--FNLTYIQQLGSCSYSVVISTSCSSPTYT 60

Query: 63  RDHISLSFGDAYGNQIYVPRIDDPSRRTFERCSTDTFHINGPCAYQICYVYLYRSGPDAW 122
           RD IS+SFGDAYGNQIYVPRIDDPSRR FERCS+DTF ++GPCAYQ+CYVYLYRSGPDAW
Sbjct: 61  RDQISVSFGDAYGNQIYVPRIDDPSRRIFERCSSDTFSVSGPCAYQLCYVYLYRSGPDAW 120

Query: 123 IPTTVKISGDNSRPITFNYNTAIPNDVWFGFNLCGHASSSNRLSSCMWFIYVIGVWILAL 182
           IPTTVKISG NSRP+TFNYNTAIPNDVWFGFNLCGHASSSNR+SSC+WF+YV  V IL L
Sbjct: 121 IPTTVKISGPNSRPVTFNYNTAIPNDVWFGFNLCGHASSSNRISSCIWFLYVSFVSILLL 180

Query: 183 LL 185
            L
Sbjct: 181 FL 180

[Close]

BLAST of MS000350 vs. ExPASy TrEMBL
Match: A0A6J1E5K7 (embryo-specific protein ATS3B-like OS=Cucurbita moschata OX=3662 GN=LOC111430911 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 4.4e-82
Identity = 151/182 (82.97%), Postives = 165/182 (90.66%), Query Frame = 0


Query: 3   MKRLLCFLLSSVFLFALSEATQLLPQPAESFNFNLTYIQQAGSCSYSVVISTSCSSPSYT 62
           MKR+LCFLL+S  L AL EAT+LLP+ AES  FNLTYIQQ GSCSYSVVISTSCSSP+YT
Sbjct: 1   MKRVLCFLLTSALLLALLEATELLPESAES--FNLTYIQQLGSCSYSVVISTSCSSPTYT 60

Query: 63  RDHISLSFGDAYGNQIYVPRIDDPSRRTFERCSTDTFHINGPCAYQICYVYLYRSGPDAW 122
           RD IS+SFGDAYGNQIYVPRIDDPSRR FERCS+DTF ++GPCAYQICYVYLYR+GPDAW
Sbjct: 61  RDQISVSFGDAYGNQIYVPRIDDPSRRIFERCSSDTFSVSGPCAYQICYVYLYRTGPDAW 120

Query: 123 IPTTVKISGDNSRPITFNYNTAIPNDVWFGFNLCGHASSSNRLSSCMWFIYVIGVWILAL 182
           IPTTVKISG NSRP+TFNYNTAIPNDVWFGFNLCGHASSSNR+SSC+WF+YV  V IL L
Sbjct: 121 IPTTVKISGPNSRPVTFNYNTAIPNDVWFGFNLCGHASSSNRISSCIWFLYVSFVSILLL 180

Query: 183 LL 185
            L
Sbjct: 181 FL 180

[Close]

BLAST of MS000350 vs. TAIR 10
Match: AT5G62200.1 (Embryo-specific protein 3, (ATS3) )

HSP 1 Score: 206.5 bits (524), Expect = 1.9e-53
Identity = 97/164 (59.15%), Postives = 123/164 (75.00%), Query Frame = 0


Query: 5   RLLCFLLSSVFLFALS-EATQLLPQPAESFNFNLTYIQQAG-SCSYSVVISTSCSSPSYT 64
           RL   L+S VF+ + S   +++L  P  + +FN++ IQ+ G +C+Y+V+ISTSCSS  YT
Sbjct: 5   RLFFTLISFVFIISTSVYESKVLDPPHVAESFNVSLIQKLGNTCAYTVIISTSCSSTRYT 64

Query: 65  RDHISLSFGDAYGNQIYVPRIDDPSRRTFERCSTDTFHINGPCAYQICYVYLYRSGPDAW 124
           RD IS++FGD YGNQIY PR+DDPS +TFE+CS+DTF INGPC YQICYVYLYRSGPD W
Sbjct: 65  RDQISVAFGDGYGNQIYAPRLDDPSTKTFEQCSSDTFQINGPCTYQICYVYLYRSGPDGW 124

Query: 125 IPTTVKISGDNSRPITFNYNTAIPNDVWFGFNLCGHASSSNRLS 167
           IP TVKI    S+ +TF YNT +P  VW+GFN C  AS SN L+
Sbjct: 125 IPNTVKIYSHGSKAVTFPYNTYVPESVWYGFNYCNSASDSNVLA 168

[Close]

BLAST of MS000350 vs. TAIR 10
Match: AT2G41475.1 (Embryo-specific protein 3, (ATS3) )

HSP 1 Score: 173.3 bits (438), Expect = 1.8e-43
Identity = 84/166 (50.60%), Postives = 111/166 (66.87%), Query Frame = 0


Query: 6   LLCFLLSSVFLFALSEA-TQLLPQPAESFNFNLTYIQQAGSCSYSVVISTSCSSPSYTRD 65
           L  F L S  LF+ + +     P P +SF      ++ A +CSY+V+I TSCSS SYTRD
Sbjct: 8   LFLFALCSFTLFSSARSFITTKPLPIDSF-IPKPKLENAAACSYTVIIKTSCSSVSYTRD 67

Query: 66  HISLSFGDAYGNQIYVPRIDDPSRRTFERCSTDTFHINGPCAYQICYVYLYRSGPDAWIP 125
            IS+SFGD YGN++YV R+DDPS RTFE+CS+DT+ I+GPC   +CY+YL R G D W P
Sbjct: 68  KISISFGDVYGNEVYVKRLDDPSSRTFEKCSSDTYKISGPCMRDVCYLYLLRQGSDGWKP 127

Query: 126 TTVKISGDNSRPITFNYNTAIPNDVWFGFNLC---GHASSSNRLSS 168
             VKI G + R +TF YN  +PN VW+GFN+C   G+  SS  +S+
Sbjct: 128 ENVKIYGSSIRSVTFYYNLFLPNSVWYGFNVCNGIGNTKSSQPIST 172

[Close]

BLAST of MS000350 vs. TAIR 10
Match: AT5G62210.1 (Embryo-specific protein 3, (ATS3) )

HSP 1 Score: 129.0 bits (323), Expect = 3.8e-30
Identity = 58/150 (38.67%), Postives = 91/150 (60.67%), Query Frame = 0


Query: 11  LSSVFLFALSEATQLLPQPAESFNFNLTYIQQAGSCSYSVVISTSCSSPSYTRDHISLSF 70
           LSS+ L  +   T  +P        +   + +  SC Y+V+++TSC SP ++RD ++++ 
Sbjct: 5   LSSILLLLVLCFTHPIPSLTFEPLISSLDLHEEESCPYTVIVTTSCFSPDWSRDQVTIAL 64

Query: 71  GDAYGNQIYVPRIDDP--SRRTFERCSTDTFHINGPCAYQICYVYLYRSGPDAWIPTTVK 130
           GDA  NQ+  PR+D P      FE+CS+DTF + G C   IC VY+YRSG D WIP TV+
Sbjct: 65  GDADDNQVVAPRLDKPLSGGGGFEKCSSDTFQVKGKCLNTICSVYIYRSGTDGWIPETVE 124

Query: 131 ISGDNSRPITFNYNTAIPNDVWFGFNLCGH 159
           I  + S+ + F++N  +P ++W+G N C +
Sbjct: 125 IYKEGSKSVKFDFNKNVPENIWYGNNYCNN 154

[Close]

BLAST of MS000350 vs. TAIR 10
Match: AT5G07190.1 (seed gene 3 )

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-25
Identity = 53/127 (41.73%), Postives = 83/127 (65.35%), Query Frame = 0


Query: 35  FNLTYIQ-QAGSCSYSVVISTSCSSPSYTRDHISLSFGDAYGNQIYVPRIDDPSRRT--F 94
           F+L+ IQ Q G+C Y+VV+ TSC SP  TRD IS+ FGDA GN++Y P++    R     
Sbjct: 22  FDLSIIQMQQGTCPYTVVVMTSCLSPESTRDQISIVFGDADGNKVYAPKLGGLVRGPGGL 81

Query: 95  ERCSTDTFHINGPCAYQ-ICYVYLYRSGPDAWIPTTVKISGDNSRPITFNYNTAIPN-DV 154
            +CST+TF + G C    IC +Y+ R+GPD W+P +++I  + S+ + F+++ ++P  + 
Sbjct: 82  GKCSTNTFQVRGQCLNDPICSLYINRNGPDGWVPESIEIYSEGSKSVKFDFSKSVPQLNT 141

Query: 155 WFGFNLC 157
           W+G N C
Sbjct: 142 WYGHNNC 148

[Close]

BLAST of MS000350 vs. TAIR 10
Match: AT5G07190.2 (seed gene 3 )

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-24
Identity = 49/119 (41.18%), Postives = 77/119 (64.71%), Query Frame = 0


Query: 42  QAGSCSYSVVISTSCSSPSYTRDHISLSFGDAYGNQIYVPRIDDPSRRT--FERCSTDTF 101
           Q G+C Y+VV+ TSC SP  TRD IS+ FGDA GN++Y P++    R      +CST+TF
Sbjct: 2   QQGTCPYTVVVMTSCLSPESTRDQISIVFGDADGNKVYAPKLGGLVRGPGGLGKCSTNTF 61

Query: 102 HINGPCAYQ-ICYVYLYRSGPDAWIPTTVKISGDNSRPITFNYNTAIPN-DVWFGFNLC 157
            + G C    IC +Y+ R+GPD W+P +++I  + S+ + F+++ ++P  + W+G N C
Sbjct: 62  QVRGQCLNDPICSLYINRNGPDGWVPESIEIYSEGSKSVKFDFSKSVPQLNTWYGHNNC 120

The following BLAST results are available for this feature:

BLAST of MS000350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140983.1	3.0e-101	100.00	embryo-specific protein ATS3B-like isoform X2 [Momordica charantia]	[more]
XP_022140984.1	3.0e-101	100.00	embryo-specific protein ATS3B-like isoform X3 [Momordica charantia]	[more]
XP_022140982.1	6.7e-101	100.00	embryo-specific protein ATS3B-like isoform X1 [Momordica charantia]	[more]
XP_022984446.1	1.4e-82	83.52	embryo-specific protein ATS3B-like [Cucurbita maxima]	[more]
XP_022923164.1	9.0e-82	82.97	embryo-specific protein ATS3B-like [Cucurbita moschata]	[more]

BLAST of MS000350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NPM5	2.7e-52	59.15	Embryo-specific protein ATS3B OS=Arabidopsis thaliana OX=3702 GN=ATS3B PE=1 SV=1	[more]
Q681K2	2.5e-42	50.60	Embryo-specific protein ATS3A OS=Arabidopsis thaliana OX=3702 GN=ATS3A PE=1 SV=1	[more]
Q9LYP6	1.8e-24	41.73	Embryo-specific protein ATS3 OS=Arabidopsis thaliana OX=3702 GN=ATS3 PE=2 SV=1	[more]

BLAST of MS000350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CHB0	1.4e-101	100.00	embryo-specific protein ATS3B-like isoform X3 OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1CJ97	1.4e-101	100.00	embryo-specific protein ATS3B-like isoform X2 OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1CIK5	3.2e-101	100.00	embryo-specific protein ATS3B-like isoform X1 OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1J591	6.8e-83	83.52	embryo-specific protein ATS3B-like OS=Cucurbita maxima OX=3661 GN=LOC111482748 P...	[more]
A0A6J1E5K7	4.4e-82	82.97	embryo-specific protein ATS3B-like OS=Cucurbita moschata OX=3662 GN=LOC111430911...	[more]

BLAST of MS000350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62200.1	1.9e-53	59.15	Embryo-specific protein 3, (ATS3)	[more]
AT2G41475.1	1.8e-43	50.60	Embryo-specific protein 3, (ATS3)	[more]
AT5G62210.1	3.8e-30	38.67	Embryo-specific protein 3, (ATS3)	[more]
AT5G07190.1	1.3e-25	41.73	seed gene 3	[more]
AT5G07190.2	1.1e-24	41.18	seed gene 3	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010417	Embryo-specific ATS3	PFAM	PF06232	ATS3	coord: 40..156 e-value: 1.7E-50 score: 170.1
None	No IPR available	GENE3D	2.60.60.20	PLAT/LH2 domain	coord: 44..151 e-value: 3.8E-6 score: 28.9
None	No IPR available	PANTHER	PTHR31718	FAMILY NOT NAMED	coord: 4..182
None	No IPR available	PANTHER	PTHR31718:SF32	EMBRYO-SPECIFIC PROTEIN ATS3B	coord: 4..182
None	No IPR available	CDD	cd00113	PLAT	coord: 46..156 e-value: 5.30305E-28 score: 99.3356
IPR036392	PLAT/LH2 domain superfamily	SUPERFAMILY	49723	Lipase/lipooxygenase domain (PLAT/LH2 domain)	coord: 43..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000350.1	MS000350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding