MS000308 (gene) Bitter gourd (TR) v1

Overview
NameMS000308
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAconitate hydratase
Locationscaffold44: 785220 .. 785633 (+)
RNA-Seq ExpressionMS000308
SyntenyMS000308
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTAAAGAGAGAATCGATCTTTTTCAGTGTCATGCTCCTCCTCCTTCTCCATATTGCAACTGCGAGATTCATCCAAACTTCTTTACCTTGCGGAGATCGTAAGCACCATGTCTAATCCGATTTTTAAATTTTTGAGTTTAGTGGTGATTAAACACGATGTGAAAGAATTTTATATTGGTTGTTTCTCTCTGTTTAAAATTTTACTTAAACTAATCTTGAGTTGAGCGATGATTTAACACTGCTTACGTTATGTTCTATAGTCAAGAAGAAGATCGATATGGGTAGGAAGAACATGGTGGGACTGCAGAATCGGCTTCTGATTAGCTCGGCTCGGCCAAGAGGAGGCAACTATATTAACAACCCACAGGCAGCGGAGAAGGCCGCGGTGCGAGCCTCCGTCTACCAGCCA

mRNA sequence

ATGGGTTTAAAGAGAGAATCGATCTTTTTCAGTGTCATGCTCCTCCTCCTTCTCCATATTGCAACTGCGAGATTCATCCAAACTTCTTTACCTTGCGGAGATCTCAAGAAGAAGATCGATATGGGTAGGAAGAACATGGTGGGACTGCAGAATCGGCTTCTGATTAGCTCGGCTCGGCCAAGAGGAGGCAACTATATTAACAACCCACAGGCAGCGGAGAAGGCCGCGGTGCGAGCCTCCGTCTACCAGCCA

Coding sequence (CDS)

ATGGGTTTAAAGAGAGAATCGATCTTTTTCAGTGTCATGCTCCTCCTCCTTCTCCATATTGCAACTGCGAGATTCATCCAAACTTCTTTACCTTGCGGAGATCTCAAGAAGAAGATCGATATGGGTAGGAAGAACATGGTGGGACTGCAGAATCGGCTTCTGATTAGCTCGGCTCGGCCAAGAGGAGGCAACTATATTAACAACCCACAGGCAGCGGAGAAGGCCGCGGTGCGAGCCTCCGTCTACCAGCCA

Protein sequence

MGLKRESIFFSVMLLLLLHIATARFIQTSLPCGDLKKKIDMGRKNMVGLQNRLLISSARPRGGNYINNPQAAEKAAVRASVYQP
Homology
[Close]
BLAST of MS000308 vs. NCBI nr
Match: KAG6600180.1 (hypothetical protein SDJN03_05413, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.4 bits (189), Expect = 6.5e-11
Identity = 45/85 (52.94%), Postives = 60/85 (70.59%), Query Frame = 0 

Query: 1  MGLKRESIFFSVMLLLLLHIATARFIQ-TSLPCGDLKKKIDMGRKNMVGLQNRLLISSAR 60
          MGLKR  I  SVM+L+L+H+AT R ++ T+LP  D  + ++M  +   G Q   L+SSAR
Sbjct: 1  MGLKRAPILLSVMVLVLVHMATGRPVRTTTLPIADF-ETMNMSGETAFGTQ---LLSSAR 60

Query: 61 PRGGNYINNPQAAEKAAVRASVYQP 85
          PRGGNYI+NPQAA KAA++ S Y P
Sbjct: 61 PRGGNYIDNPQAANKAAIQTSGYHP 81

[Close]
BLAST of MS000308 vs. NCBI nr
Match: KGN53132.1 (hypothetical protein Csa_014795 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 9.4e-10
Identity = 48/85 (56.47%), Postives = 57/85 (67.06%), Query Frame = 0 

Query: 1  MGLKRESIFFSVMLLLLL-HIATARFIQTSLPCGDLKKKIDMGRKNMVGLQNRLLISSAR 60
          MGLKRESIFFSVMLLLLL ++AT R +  S       + ++M  KN  G +    +SSA 
Sbjct: 1  MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFETMNMDGKNRDGSR---FLSSAL 60

Query: 61 PRGGNYINNPQAAEKAAVRASVYQP 85
          PRGGNYIN P AAEKAAV  + YQP
Sbjct: 61 PRGGNYINKPHAAEKAAVGRAGYQP 82

[Close]
BLAST of MS000308 vs. NCBI nr
Match: KAA0044639.1 (Aconitate hydratase [Cucumis melo var. makuwa] >TYK16949.1 Aconitate hydratase [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 2.4e-05
Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = 0 

Query: 20 IATARFIQTSLPCGDLKKKIDMGRKNMVGLQNRLLISSARPRGGNYINNPQAAEKAAVRA 79
          +AT R I ++   GD  + ++M  KN  G +   L+S+A PRGGNYINNP AAEKAAVR 
Sbjct: 1  MATGRLIYSTSLHGDF-ETMNMDGKNRDGSR---LLSTALPRGGNYINNPHAAEKAAVRR 60

Query: 80 SVYQP 85
          S YQP
Sbjct: 61 SGYQP 61

[Close]
BLAST of MS000308 vs. ExPASy TrEMBL
Match: A0A0A0KXI8 (Aconitate hydratase OS=Cucumis sativus OX=3659 GN=Csa_4G017200 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.5e-10
Identity = 48/85 (56.47%), Postives = 57/85 (67.06%), Query Frame = 0 

Query: 1  MGLKRESIFFSVMLLLLL-HIATARFIQTSLPCGDLKKKIDMGRKNMVGLQNRLLISSAR 60
          MGLKRESIFFSVMLLLLL ++AT R +  S       + ++M  KN  G +    +SSA 
Sbjct: 1  MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFETMNMDGKNRDGSR---FLSSAL 60

Query: 61 PRGGNYINNPQAAEKAAVRASVYQP 85
          PRGGNYIN P AAEKAAV  + YQP
Sbjct: 61 PRGGNYINKPHAAEKAAVGRAGYQP 82

[Close]
BLAST of MS000308 vs. ExPASy TrEMBL
Match: A0A5A7TTS9 (Aconitate hydratase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00860 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.2e-05
Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = 0 

Query: 20 IATARFIQTSLPCGDLKKKIDMGRKNMVGLQNRLLISSARPRGGNYINNPQAAEKAAVRA 79
          +AT R I ++   GD  + ++M  KN  G +   L+S+A PRGGNYINNP AAEKAAVR 
Sbjct: 1  MATGRLIYSTSLHGDF-ETMNMDGKNRDGSR---LLSTALPRGGNYINNPHAAEKAAVRR 60

Query: 80 SVYQP 85
          S YQP
Sbjct: 61 SGYQP 61

The following BLAST results are available for this feature:
BLAST of MS000308 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6600180.16.5e-1152.94hypothetical protein SDJN03_05413, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN53132.19.4e-1056.47hypothetical protein Csa_014795 [Cucumis sativus][more]
KAA0044639.12.4e-0553.85Aconitate hydratase [Cucumis melo var. makuwa] >TYK16949.1 Aconitate hydratase [... [more]
BLAST of MS000308 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS000308 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXI84.5e-1056.47Aconitate hydratase OS=Cucumis sativus OX=3659 GN=Csa_4G017200 PE=4 SV=1[more]
A0A5A7TTS91.2e-0553.85Aconitate hydratase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G... [more]
BLAST of MS000308 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS000308.1MS000308.1mRNA