MS000303 (gene) Bitter gourd (TR) v1

Overview
NameMS000303
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold44: 762950 .. 763390 (-)
RNA-Seq ExpressionMS000303
SyntenyMS000303
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCAAGAGAGTTTCAGTGATGTGGGCTGTGGTGTTTTTCTTTATTATGCTTTTAATGGCTTCTAATGTTGCTGCTAGGAAATTTCCTGATACTAATATCCCTCTTGGAGATGGCTTGGACCTTCAATTTGATGCATCACCTTTGCTCTGTGAGTCTCTATAAGTTTTTTGGATTGTGTAAAAAAAATGTATTATAGATACTTATAGTCTGTATAATCTATGGTTTTTGAGTTTGTAATTTGTAAAAATTAATATACGATAAAACAAGTAATGATGATATATCAAATATAAATTGTTGGTTTTGTTCTTGCACTCTTTGAAATCTCTAATTATTTCCTCTGTTTTGTTTTCAGACAAATTGGAACTGGAGGCGGAAAAGACATATGAGGATTTTCTAAGCTCGCACAGTAATGATGATCCTCGTGGTGGAAACTAC

mRNA sequence

ATGGCTTCCAAGAGAGTTTCAGTGATGTGGGCTGTGGTGTTTTTCTTTATTATGCTTTTAATGGCTTCTAATGTTGCTGCTAGGAAATTTCCTGATACTAATATCCCTCTTGGAGATGGCTTGGACCTTCAATTTGATGCATCACCTTTGCTCTACAAATTGGAACTGGAGGCGGAAAAGACATATGAGGATTTTCTAAGCTCGCACAGTAATGATGATCCTCGTGGTGGAAACTAC

Coding sequence (CDS)

ATGGCTTCCAAGAGAGTTTCAGTGATGTGGGCTGTGGTGTTTTTCTTTATTATGCTTTTAATGGCTTCTAATGTTGCTGCTAGGAAATTTCCTGATACTAATATCCCTCTTGGAGATGGCTTGGACCTTCAATTTGATGCATCACCTTTGCTCTACAAATTGGAACTGGAGGCGGAAAAGACATATGAGGATTTTCTAAGCTCGCACAGTAATGATGATCCTCGTGGTGGAAACTAC

Protein sequence

MASKRVSVMWAVVFFFIMLLMASNVAARKFPDTNIPLGDGLDLQFDASPLLYKLELEAEKTYEDFLSSHSNDDPRGGNY
Homology
[Close]
BLAST of MS000303 vs. NCBI nr
Match: KAG6600181.1 (hypothetical protein SDJN03_05414, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.0 bits (219), Expect = 2.0e-14
Identity = 46/80 (57.50%), Postives = 56/80 (70.00%), Query Frame = 0 

Query: 1  MASKRVSVMWAVVFFFIMLLMASNVAARKFPDTNIPLGDGLDLQFDASPLLYKLELEAEK 60
          MAS  VSV W  VFF  MLLMASNV++RK  D NIP+ DG +++  AS   Y+LE E EK
Sbjct: 1  MASTNVSVSWRAVFFIAMLLMASNVSSRKLLDANIPVEDGFNVEIGASSFFYELEGELEK 60

Query: 61 TYEDFLSSHS-NDDPRGGNY 80
           +E F+ SH+ ND PRGGNY
Sbjct: 61 RFESFIKSHTDNDVPRGGNY 80

[Close]
BLAST of MS000303 vs. NCBI nr
Match: KGN53134.1 (hypothetical protein Csa_015383 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 1.9e-12
Identity = 47/84 (55.95%), Postives = 60/84 (71.43%), Query Frame = 0 

Query: 1  MASKRVSVMWAVVFFFIMLLMAS----NVAARKFPDTNIPLGDGLDLQFDASPLLYKLEL 60
          MASKRVS++  VVFF IMLL++S    NV+ARKF D N PL D  +LQ DAS L YK++ 
Sbjct: 1  MASKRVSMILNVVFFIIMLLISSNNNYNVSARKFLDVNTPLDDAFNLQMDASSLFYKMKG 60

Query: 61 EAEKTYEDFL-SSHSNDDPRGGNY 80
          E ++ +ED L ++  ND PRGGNY
Sbjct: 61 ELQRRFEDLLKATTDNDIPRGGNY 84

[Close]
BLAST of MS000303 vs. NCBI nr
Match: KGN53135.1 (hypothetical protein Csa_014652 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 6.8e-10
Identity = 46/85 (54.12%), Postives = 56/85 (65.88%), Query Frame = 0 

Query: 1  MASKRVSVMWAVVFFFIMLLMAS----NVAARKFPDTNIP-LGDGLDLQFDASPLLYKLE 60
          MAS RVS++  V+FF IML ++S    N +ARKF D N P L D  DLQ  AS L YKLE
Sbjct: 1  MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGASSLFYKLE 60

Query: 61 LEAEKTYEDFL-SSHSNDDPRGGNY 80
           E +K +ED L ++  ND PRGGNY
Sbjct: 61 GELQKRFEDLLKTTTDNDIPRGGNY 85

[Close]
BLAST of MS000303 vs. NCBI nr
Match: XP_031739611.1 (uncharacterized protein LOC116403190 isoform X2 [Cucumis sativus])

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-04
Identity = 27/53 (50.94%), Postives = 36/53 (67.92%), Query Frame = 0 

Query: 28  RKFPDTNIPLGDGLDLQFDASPLLYKLELEAEKTYEDFL-SSHSNDDPRGGNY 80
           +KF D N PL D  +LQ DAS L YK++ E ++ +ED L ++  ND PRGGNY
Sbjct: 54  KKFLDVNTPLDDAFNLQMDASSLFYKMKGELQRRFEDLLKATTDNDIPRGGNY 106

[Close]
BLAST of MS000303 vs. ExPASy TrEMBL
Match: A0A0A0KW84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022210 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 9.2e-13
Identity = 47/84 (55.95%), Postives = 60/84 (71.43%), Query Frame = 0 

Query: 1  MASKRVSVMWAVVFFFIMLLMAS----NVAARKFPDTNIPLGDGLDLQFDASPLLYKLEL 60
          MASKRVS++  VVFF IMLL++S    NV+ARKF D N PL D  +LQ DAS L YK++ 
Sbjct: 1  MASKRVSMILNVVFFIIMLLISSNNNYNVSARKFLDVNTPLDDAFNLQMDASSLFYKMKG 60

Query: 61 EAEKTYEDFL-SSHSNDDPRGGNY 80
          E ++ +ED L ++  ND PRGGNY
Sbjct: 61 ELQRRFEDLLKATTDNDIPRGGNY 84

[Close]
BLAST of MS000303 vs. ExPASy TrEMBL
Match: A0A0A0KU24 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022220 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.3e-10
Identity = 46/85 (54.12%), Postives = 56/85 (65.88%), Query Frame = 0 

Query: 1  MASKRVSVMWAVVFFFIMLLMAS----NVAARKFPDTNIP-LGDGLDLQFDASPLLYKLE 60
          MAS RVS++  V+FF IML ++S    N +ARKF D N P L D  DLQ  AS L YKLE
Sbjct: 1  MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGASSLFYKLE 60

Query: 61 LEAEKTYEDFL-SSHSNDDPRGGNY 80
           E +K +ED L ++  ND PRGGNY
Sbjct: 61 GELQKRFEDLLKTTTDNDIPRGGNY 85

The following BLAST results are available for this feature:
BLAST of MS000303 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6600181.12.0e-1457.50hypothetical protein SDJN03_05414, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN53134.11.9e-1255.95hypothetical protein Csa_015383 [Cucumis sativus][more]
KGN53135.16.8e-1054.12hypothetical protein Csa_014652 [Cucumis sativus][more]
XP_031739611.11.5e-0450.94uncharacterized protein LOC116403190 isoform X2 [Cucumis sativus][more]
BLAST of MS000303 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS000303 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KW849.2e-1355.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022210 PE=4 SV=1[more]
A0A0A0KU243.3e-1054.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022220 PE=4 SV=1[more]
BLAST of MS000303 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS000303.1MS000303.1mRNA